|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070602 ID=TCONS_00070602|Name=TCONS_00070602|organism=Clytia hemisphaerica|type=transcript|length=2371bpRun BLAST on NCBI transcript from alignment at scaffold_57:44085..47917+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070602 ID=TCONS_00070602|Name=TCONS_00070602|organism=Clytia hemisphaerica|type=transcript|length=3833bp|location=Sequence derived from alignment at scaffold_57:44085..47917+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070602 vs. Swiss-Prot (Human)
Match: OZF (Zinc finger protein OZF OS=Homo sapiens GN=ZNF146 PE=1 SV=2) HSP 1 Score: 172.94 bits (437), Expect = 6.683e-48 Identity = 95/210 (45.24%), Postives = 133/210 (63.33%), Query Frame = 3
Query: 1116 MTQVSSERLNQSFSNFQCKECGKFLSSKGSLKRHIHCMHKEIKLFECKECDCYFMQKIDLLLHINSFHEKIIQYKCKDCGKVFLKKHHLQRHEEIHIGIKPFECQVCGKSFMFKYHLTQHQMIHAGIKPHKCKVCEKSFILKASLYRHEQIHSGKKPFKCKECGKSFSQNSYLLEHQNVHSNVK-YQCDQCDKCFSRKSYLSRHKKIHGG 1742
M+ +S +R+ + F CK CGK S K +L H H H K FEC EC F QK ++ H N+ H ++C +CGK F +K +L H++IH G KPFEC+ CGK+F+ K +L +HQ H G KP CK C K+F K++L HE+IH G+KPFKC ECG +F Q YL++HQN+H+ K Y+C++C K FS+++ L H +IH G
Sbjct: 1 MSHLSQQRIYSGENPFACKVCGKVFSHKSNLTEHEH-FHTREKPFECNECGKAFSQKQYVIKHQNT-HTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSG 208 HSP 2 Score: 159.844 bits (403), Expect = 2.789e-43 Identity = 90/195 (46.15%), Postives = 122/195 (62.56%), Query Frame = 3
Query: 1161 FQCKECGKFLSSKGSLKRHIHCMHKEIKLFECKECDCYFMQKIDLLLHINSFHEKIIQYKCKDCGKVFLKKHHLQRHEEIHIGIKPFECQVCGKSFMFKYHLTQHQMIHAGIKPHKCKVCEKSFILKASLYRHEQIHSGKKPFKCKECGKSFSQNSYLLEHQNVHSNVK-YQCDQCDKCFSRKSYLSRHKKIHGG 1742
F+C ECGK S K + +H + H KLFEC EC F QK +LL H H ++CKDCGK F++K +L RH+ H G KPF C+ CGK+F K +LT+H+ IH G KP KC C +F K L +H+ IH+G+KP++C ECGK+FSQ + L+ H +HS K Y+C+ C K FS+ S L+ H + H G
Sbjct: 44 FECNECGKAFSQKQYVIKHQN-THTGEKLFECNECGKSFSQKENLLTH-QKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTG 236 HSP 3 Score: 154.066 bits (388), Expect = 3.489e-41 Identity = 90/195 (46.15%), Postives = 121/195 (62.05%), Query Frame = 3
Query: 1161 FQCKECGKFLSSKGSLKRHIHCMHKEIKLFECKECDCYFMQKIDLLLHINSFHEKIIQYKCKDCGKVFLKKHHLQRHEEIHIGIKPFECQVCGKSFMFKYHLTQHQMIHAGIKPHKCKVCEKSFILKASLYRHEQIHSGKKPFKCKECGKSFSQNSYLLEHQNVHSNVK-YQCDQCDKCFSRKSYLSRHKKIHGG 1742
F+C ECGK S K +L H +H K FECK+C F+QK +L+ H + H + CK+CGK F K +L HE+IHIG KPF+C CG +F K +L +HQ IH G KP++C C K+F + SL H +IHSG KP++C CGK+FSQ+S L H H+ K Y C++C K FS+ S L+ H +IH G
Sbjct: 72 FECNECGKSFSQKENLLTHQK-IHTGEKPFECKDCGKAFIQKSNLIRHQRT-HTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRIHTG 264 HSP 4 Score: 151.369 bits (381), Expect = 3.432e-40 Identity = 90/217 (41.47%), Postives = 127/217 (58.53%), Query Frame = 3
Query: 1101 ECDTNMTQ----VSSERLNQSFSNFQCKECGKFLSSKGSLKRHIHCMHKEIKLFECKECDCYFMQKIDLLLHINSFHEKIIQYKCKDCGKVFLKKHHLQRHEEIHIGIKPFECQVCGKSFMFKYHLTQHQMIHAGIKPHKCKVCEKSFILKASLYRHEQIHSGKKPFKCKECGKSFSQNSYLLEHQNVHSNVK-YQCDQCDKCFSRKSYLSRHKKIH 1736
EC + +Q ++ ++++ F+CK+CGK K +L RH H K F CKEC F K +L H H +KC +CG F +K +L +H+ IH G KP+EC CGK+F + L H IH+G KP++C VC K+F +SL H + H+G+KP+ C ECGK+FSQ S L H +H+ K YQC +C K FS+KS+ RH+KIH
Sbjct: 76 ECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQR-THTGEKPFVCKECGKTFSGKSNLTEH-EKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRIHTGKKPYQCSECGKAFSQKSHHIRHQKIH 290 HSP 5 Score: 131.724 bits (330), Expect = 2.545e-33 Identity = 76/179 (42.46%), Postives = 103/179 (57.54%), Query Frame = 3
Query: 1125 VSSERLNQSFSNFQCKECGKFLSSKGSLKRHIHCMHKEIKLFECKECDCYFMQKIDLLLHINSFHEKIIQYKCKDCGKVFLKKHHLQRHEEIHIGIKPFECQVCGKSFMFKYHLTQHQMIHAGIKPHKCKVCEKSFILKASLYRHEQIHSGKKPFKCKECGKSFSQNSYLLEHQNVHSN 1661
+ +R + F CKECGK S K +L H +H K F+C EC F QK L+ H N H Y+C +CGK F ++ L H IH G KP+EC VCGK+F LT H H G KP+ C C K+F ++L H +IH+GKKP++C ECGK+FSQ S+ + HQ +H++
Sbjct: 116 IRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEK-IHIGEKPFKCSECGTAFGQKKYLIKHQN-IHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRIHTGKKPYQCSECGKAFSQKSHHIRHQKIHTH 292 The following BLAST results are available for this feature:
BLAST of TCONS_00070602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.