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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070600 ID=TCONS_00070600|Name=TCONS_00070600|organism=Clytia hemisphaerica|type=transcript|length=3976bpRun BLAST on NCBI transcript from alignment at scaffold_57:43997..49842+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070600 ID=TCONS_00070600|Name=TCONS_00070600|organism=Clytia hemisphaerica|type=transcript|length=5846bp|location=Sequence derived from alignment at scaffold_57:43997..49842+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070600 vs. Swiss-Prot (Human)
Match: ZFP28 (Zinc finger protein 28 homolog OS=Homo sapiens GN=ZFP28 PE=1 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 7.113e-47 Identity = 105/256 (41.02%), Postives = 143/256 (55.86%), Query Frame = 1
Query: 1090 DSEKQTNFDDHCENNQ----VITFVGNPPSRNVNSDIECDTNMTQVSS----ERLNQSFSNFQCKECGKFLSSKGSLKRHIHCMHKEIKLFECKECDCYFMQKIDLLLHINSFHEKIIQYKCKDCGKVFLKKHHLQRHEEIHIGIKPFECQVCGKSFMFKYHLTQHQMIHAGIKPHKCKVCEKSFILKASLYRHEQIHSGKKPFKCKECGKSFSQNSYLLEHQNVHSNVK-YQCDQCDKCFSRKSYLSRHKKIHGG 1830
DSE++ + D +N Q VI G + + EC TQ SS +R++ ++C ECGK S S RH C H K +EC EC F+Q L+ H +H + C DCGK F L +H IH G KP++C VC KSF + LT HQ IH G KP++C VC K+F ASL +H+++HSG+KPFKCKECGK+F QN +L H +H+ K ++C +C K FS S L+ H++IH G
Sbjct: 387 DSEEKVHNRDSIKNFQKSSVVIKQTGIYAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPYKCNECGKAFSDGSSFARHQRC-HTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPFECAECGKSFSISSQLATHQRIHTG 641 HSP 2 Score: 159.844 bits (403), Expect = 1.130e-39 Identity = 85/204 (41.67%), Postives = 117/204 (57.35%), Query Frame = 1
Query: 1222 ERLNQSFSNFQCKECGKFLSSKGSLKRHIHCMHKEIKLFECKECDCYFMQKIDLLLHINSFHEKIIQYKCKDCGKVFLKKHHLQRHEEIHIGIKPFECQVCGKSFMFKYHLTQHQMIHAGIKPHKCKVCEKSFILKASLYRHEQIHSGKKPFKCKECGKSFSQNSYLLEHQNVHSNVK-YQCDQCDKCFSRKSYLSRHKKIHGG 1830
R++ ++C C K SL H +H K +EC C F L H H +KCK+CGK F + HL H IH G KPFEC CGKSF L HQ IH G KP++CKVC K+F KA L +H++ H+G+KP++CKECGK+FSQ ++L++HQ VH+ K Y+C +C K F S ++H+++H G
Sbjct: 524 RRIHTGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPYECDVCRKAFSHHASLTQH-QRVHSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPFECAECGKSFSISSQLATHQRIHTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPYKCMECGKAFGDNSSCTQHQRLHTG 725 HSP 3 Score: 157.147 bits (396), Expect = 9.068e-39 Identity = 83/204 (40.69%), Postives = 118/204 (57.84%), Query Frame = 1
Query: 1222 ERLNQSFSNFQCKECGKFLSSKGSLKRHIHCMHKEIKLFECKECDCYFMQKIDLLLHINSFHEKIIQYKCKDCGKVFLKKHHLQRHEEIHIGIKPFECQVCGKSFMFKYHLTQHQMIHAGIKPHKCKVCEKSFILKASLYRHEQIHSGKKPFKCKECGKSFSQNSYLLEHQNVHSNVK-YQCDQCDKCFSRKSYLSRHKKIHGG 1830
+R++ F+CKECGK L H+ +H K FEC EC F L H H Y+CK C K F +K HL +H++ H G KP+EC+ CGK+F HL QHQ +H G KP+KC C K+F +S +H+++H+G++P++C ECGK+F S L+ H+ H+ K Y+C C K FS + LS H++IH G
Sbjct: 580 QRVHSGEKPFKCKECGKAFRQNIHLASHLR-IHTGEKPFECAECGKSFSISSQLATH-QRIHTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPYECSVCGKAFSHRQSLSVHQRIHSG 781 HSP 4 Score: 153.68 bits (387), Expect = 8.837e-38 Identity = 84/211 (39.81%), Postives = 121/211 (57.35%), Query Frame = 1
Query: 1201 NMTQVSSERLNQSFSNFQCKECGKFLSSKGSLKRHIHCMHKEIKLFECKECDCYFMQKIDLLLHINSFHEKIIQYKCKDCGKVFLKKHHLQRHEEIHIGIKPFECQVCGKSFMFKYHLTQHQMIHAGIKPHKCKVCEKSFILKASLYRHEQIHSGKKPFKCKECGKSFSQNSYLLEHQNVHSNVK-YQCDQCDKCFSRKSYLSRHKKIHGG 1830
N+ S R++ F+C ECGK S L H +H K +ECK C F QK L H + H Y+CK+CGK F + HL +H+ +H G KP++C CGK+F TQHQ +H G +P++C C K+F K+SL H + H+G+KP++C CGK+FS L HQ +HS K Y+C +C K F + +L++HK++H G
Sbjct: 601 NIHLASHLRIHTGEKPFECAECGKSFSISSQLATHQR-IHTGEKPYECKVCSKAFTQKAHLAQHQKT-HTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPYECKECRKTFIQIGHLNQHKRVHTG 809 HSP 5 Score: 118.242 bits (295), Expect = 9.200e-27 Identity = 64/165 (38.79%), Postives = 91/165 (55.15%), Query Frame = 3
Query: 3207 DCNVCGKSFARNGDLKRHKLSHTDLKPFKCEECGKSFLLKGTLKTHLITHTGIKPFQCEICEKRFYQKHQLKKHIANRHSINTQSFNCNECRKTFKAEKSLLEHVRSFHKGIK-FECTDCGKGFTRKSDLRKHENSAHKGIYSFQCELCMRGFSNKSHFNYHQRT 3698
DC CGK+F+ + L +H+ HT KP+KC+ C KSF +L H HTG KP++C++C K F L +H R + F C EC K F+ L H+R H G K FEC +CGK F+ S L H+ H G ++C++C + F+ K+H HQ+T
Sbjct: 506 DCIDCGKAFSDHIGLNQHRRIHTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPYECDVCRKAFSHHASLTQH--QRVHSGEKPFKCKECGKAFRQNIHLASHLR-IHTGEKPFECAECGKSFSISSQLATHQR-IHTGEKPYECKVCSKAFTQKAHLAQHQKT 666 HSP 6 Score: 116.701 bits (291), Expect = 3.480e-26 Identity = 64/172 (37.21%), Postives = 93/172 (54.07%), Query Frame = 1
Query: 1249 FQCKECGKFLSSKGSLKRHIHCMHKEIKLFECKECDCYFMQKIDLLLHINSFHEKIIQYKCKDCGKVFLKKHHLQRHEEIHIGIKPFECQVCGKSFMFKYHLTQHQMIHAGIKPHKCKVCEKSFILKASLYRHEQIHSGKKPFKCKECGKSFSQNSYLLEHQNVHSNVKYQC 1764
++CKECGK S L +H +H K ++C EC F H H Y+C +CGK F K L H H G KP+EC VCGK+F + L+ HQ IH+G KP++CK C K+FI L +H+++H+G++ + K+ K F Q ++L HQ +H+ C
Sbjct: 673 YECKECGKAFSQTTHLIQHQR-VHTGEKPYKCMECGKAFGDNSSCTQH-QRLHTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSYNYKKSRKVFRQTAHLAHHQRIHTGESSTC 842 HSP 7 Score: 112.079 bits (279), Expect = 8.720e-25 Identity = 66/190 (34.74%), Postives = 90/190 (47.37%), Query Frame = 3
Query: 3210 CNVCGKSFARNGDLKRHKLSHTDLKPFKCEECGKSFLLKGTLKTHLITHTGIKPFQCEICEKRFYQKHQLKKHIANRHSINTQSFNCNECRKTFKAEKSLLEHVR---------------------------SFHKGIK-FECTDCGKGFTRKSDLRKHENSAHKGIYSFQCELCMRGFSNKSHFNYHQR 3695
C CGK+F +N L H HT KPF+C ECGKSF + L TH HTG KP++C++C K F QK L +H + + + C EC K F L++H R H G + +EC +CGK F KS L H S H G ++C +C + FS++ + HQR
Sbjct: 591 CKECGKAFRQNIHLASHLRIHTGEKPFECAECGKSFSISSQLATHQRIHTGEKPYECKVCSKAFTQKAHLAQH--QKTHTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPYECIECGKAFKTKSSLICHRRS-HTGEKPYECSVCGKAFSHRQSLSVHQR 777 HSP 8 Score: 107.842 bits (268), Expect = 1.730e-23 Identity = 61/164 (37.20%), Postives = 90/164 (54.88%), Query Frame = 3
Query: 3207 DCNVCGKSFARNGDLKRHKLSHTDLKPFKCEECGKSFLLKGTLKTHLITHTGIKPFQCEICEKRFYQKHQLKKHIANRHSINTQSFNCNECRKTFKAEKSLLEHVRSFHKGIK-FECTDCGKGFTRKSDLRKHENSAHKGIYSFQCELCMRGFSNKSHFNYHQR 3695
+C+VC K+F+ + L +H+ H+ KPFKC+ECGK+F L +HL HTG KPF+C C K F QL H R + + C C K F + L +H ++ H G K +EC +CGK F++ + L +H+ H G ++C C + F + S HQR
Sbjct: 562 ECDVCRKAFSHHASLTQHQRVHSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPFECAECGKSFSISSQLATH--QRIHTGEKPYECKVCSKAFTQKAHLAQHQKT-HTGEKPYECKECGKAFSQTTHLIQHQR-VHTGEKPYKCMECGKAFGDNSSCTQHQR 721 HSP 9 Score: 107.842 bits (268), Expect = 1.837e-23 Identity = 67/189 (35.45%), Postives = 98/189 (51.85%), Query Frame = 3
Query: 3135 AASSDAPSHRRSRTKKRGSVTKMCDCNVCGKSFARNGDLKRHKLSHTDLKPFKCEECGKSFLLKGTLKTHLITHTGIKPFQCEICEKRFYQKHQLKKHIANRHSINTQSFNCNECRKTFKAEKSLLEHVRSFHKGIK-FECTDCGKGFTRKSDLRKHENSAHKGIYSFQCELCMRGFSNKSHFNYHQRT 3698
+ SS +H+R T + K +C VC K+F + L +H+ +HT KP++C+ECGK+F L H HTG KP++C C K F +H R + + C EC K FK + SL+ H RS H G K +EC+ CGK F+ + L H+ H G ++C+ C + F H N H+R
Sbjct: 627 SISSQLATHQRIHTGE-----KPYECKVCSKAFTQKAHLAQHQKTHTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPYKCMECGKAFGDNSSCTQH--QRLHTGQRPYECIECGKAFKTKSSLICHRRS-HTGEKPYECSVCGKAFSHRQSLSVHQR-IHSGKKPYECKECRKTFIQIGHLNQHKRV 806 HSP 10 Score: 100.138 bits (248), Expect = 4.222e-21 Identity = 60/168 (35.71%), Postives = 86/168 (51.19%), Query Frame = 3
Query: 3198 KMCDCNVCGKSFARNGDLKRHKLSHTDLKPFKCEECGKSFLLKGTLKTHLITHTGIKPFQCEICEKRFYQKHQLKKHIANRHSINTQSFNCNECRKTFKAEKSLLEHVRSFHKGIK-FECTDCGKGFTRKSDLRKHENSAHKGIYSFQCELCMRGFSNKSHFNYHQRT 3698
K+ CN C K+F ++ L H+ HT KP+KC ECGK+F + H HTG KP++C C K F Q L +H H+ + F+C +C K F L +H R H G K ++C C K F S L H+ H G ++C++C + FS+ + HQR
Sbjct: 418 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPYKCNECGKAFSDGSSFARHQRCHTGKKPYECIECGKAFIQNTSLIRHWRYYHT-GEKPFDCIDCGKAFSDHIGLNQH-RRIHTGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPYECDVCRKAFSHHASLTQHQRV 582 HSP 11 Score: 88.9669 bits (219), Expect = 1.030e-17 Identity = 53/158 (33.54%), Postives = 76/158 (48.10%), Query Frame = 3
Query: 3225 KSFARNGDLKRHKLSHTDLKPFKCEECGKSFLLKGTLKTHLITHTGIKPFQCEICEKRFYQKHQLKKHIANRHSINTQSFNCNECRKTFKAEKSLLEHVRSFHKGIK-FECTDCGKGFTRKSDLRKHENSAHKGIYSFQCELCMRGFSNKSHFNYHQR 3695
K+F ++ + + + K FKC EC K+F +L H HTG KP++C C K F +H R + + C EC K F SL+ H R +H G K F+C DCGK F+ L +H H G ++C++C + F S HQR
Sbjct: 399 KNFQKSSVVIKQTGIYAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPYKCNECGKAFSDGSSFARH--QRCHTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPFDCIDCGKAFSDHIGLNQHRR-IHTGEKPYKCDVCHKSFRYGSSLTVHQR 553 The following BLAST results are available for this feature:
BLAST of TCONS_00070600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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