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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070599 ID=TCONS_00070599|Name=TCONS_00070599|organism=Clytia hemisphaerica|type=transcript|length=1779bpRun BLAST on NCBI transcript from alignment at scaffold_57:6793..10289+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070599 ID=TCONS_00070599|Name=TCONS_00070599|organism=Clytia hemisphaerica|type=transcript|length=3497bp|location=Sequence derived from alignment at scaffold_57:6793..10289+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070599 vs. Swiss-Prot (Human)
Match: ZN782 (Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 8.990e-45 Identity = 90/195 (46.15%), Postives = 118/195 (60.51%), Query Frame = 1
Query: 781 KSYKCDVCGQCFLRKIHFQQHVVTHTGYKPFKCDTCGKGFNRPRNLLRHHGIHTGYKPYKCELCHMAFSQSAHLKSHLISHSPIKPFECQECGKRFAQKFDLKRHDRNNHKGIKPFECKECGKCFAFKVDLNKHMTIHAEIKPHVCDVCGKRFPRKCHLNQHLRTGHAKKDKFNCGLCDMNFRYKTSYEKHVKTH 1365
+ YKCD CG+ F K ++H THTG KP+KC+ CGK F + L HH IHTG KPYKC C AFSQ ++L+ H +H+ KP++C+ECGK F QK +L+ H R H G KP+EC ECGK F+ K L KH H KP+ C+ CG+ F +K +L H RT H + + C C F K+S +H K H
Sbjct: 504 RPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQR-THTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRT-HTGEKPYKCDKCGRTFSQKSSLREHQKAH 696 HSP 2 Score: 156.762 bits (395), Expect = 1.412e-40 Identity = 84/205 (40.98%), Postives = 114/205 (55.61%), Query Frame = 1
Query: 754 VQNNTNRKGKSYKCDVCGQCFLRKIHFQQHVVTHTGYKPFKCDTCGKGFNRPRNLLRHHGIHTGYKPYKCELCHMAFSQSAHLKSHLISHSPIKPFECQECGKRFAQKFDLKRHDRNNHKGIKPFECKECGKCFAFKVDLNKHMTIHAEIKPHVCDVCGKRFPRKCHLNQHLRTGHAKKDKFNCGLCDMNFRYKTSYEKHVKTHV 1368
V T+ K ++C+ CG+ F + H THTG +P+KCD CGK F L +HH HTG KPYKC C AF Q + L+ H H+ KP++C CG+ F+QK +L+ H R H G KP++C+ECGK F K +L H H KP+ C+ CGK F K L +H RT H + +NC C F K++ H +TH
Sbjct: 467 VHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHR-THTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRT-HTGEKPYNCNQCGEAFSQKSNLRVHQRTHT 669 HSP 3 Score: 149.058 bits (375), Expect = 7.196e-38 Identity = 81/196 (41.33%), Postives = 111/196 (56.63%), Query Frame = 1
Query: 781 KSYKCDVCGQCFLRKIHFQQHVVTHTGYKPFKCDTCGKGFNRPRNLLRHHGIHTGYKPYKCELCHMAFSQSAHLKSHLISHSPIKPFECQECGKRFAQKFDLKRHDRNNHKGIKPFECKECGKCFAFKVDLNKHMTIHAEIKPHVCDVCGKRFPRKCHLNQHLRTGHAKKDKFNCGLCDMNFRYKTSYEKHVKTHV 1368
K YKCD C + F K + H THTG KPF+C CGK FN L+ H HTG KP++C C +FS + L++H +H+ +P++C ECGK F K L++H R H G KP++C +CGK F K L H IH KP+ C+ CG+ F +K +L H RT H + + C C FR K++ H +TH
Sbjct: 420 KPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHR-THTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRT-HTGEKPYQCEECGKTFRQKSNLRGHQRTHT 613 HSP 4 Score: 143.28 bits (360), Expect = 5.691e-36 Identity = 79/196 (40.31%), Postives = 105/196 (53.57%), Query Frame = 1
Query: 781 KSYKCDVCGQCFLRKIHFQQHVVTHTGYKPFKCDTCGKGFNRPRNLLRHHGIHTGYKPYKCELCHMAFSQSAHLKSHLISHSPIKPFECQECGKRFAQKFDLKRHDRNNHKGIKPFECKECGKCFAFKVDLNKHMTIHAEIKPHVCDVCGKRFPRKCHLNQHLRTGHAKKDKFNCGLCDMNFRYKTSYEKHVKTHV 1368
K Y+C CG+ F K ++H THTG KP+KCD C K F+ L H HTG KP++C C +F+ + L H +H+ KPFEC ECGK F+ L+ H R H G +P++C ECGK F K L KH H KP+ C+ CGK F +K L H R H + + C C F K++ H +TH
Sbjct: 392 KPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNH-RRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRI-HTGEKPYKCNHCGEAFSQKSNLRVHHRTHT 585 HSP 5 Score: 142.124 bits (357), Expect = 1.348e-35 Identity = 80/205 (39.02%), Postives = 111/205 (54.15%), Query Frame = 1
Query: 754 VQNNTNRKGKSYKCDVCGQCFLRKIHFQQHVVTHTGYKPFKCDTCGKGFNRPRNLLRHHGIHTGYKPYKCELCHMAFSQSAHLKSHLISHSPIKPFECQECGKRFAQKFDLKRHDRNNHKGIKPFECKECGKCFAFKVDLNKHMTIHAEIKPHVCDVCGKRFPRKCHLNQHLRTGHAKKDKFNCGLCDMNFRYKTSYEKHVKTHV 1368
+ T+ K ++C CG+ F K H THTG KPF+C+ CGK F+ L H HTG +PYKC+ C AF + L+ H +H+ KP++C +CGK F QK L+ H R H G KP++C CG+ F+ K +L H H KP+ C+ CGK F +K +L H RT H + + C C F K+ KH +TH
Sbjct: 439 IHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHR-IHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRT-HTGEKPYECNECGKAFSEKSVLRKHQRTHT 641 HSP 6 Score: 139.428 bits (350), Expect = 1.063e-34 Identity = 81/206 (39.32%), Postives = 105/206 (50.97%), Query Frame = 1
Query: 751 AVQNNTNRKGKSYKCDVCGQCFLRKIHFQQHVVTHTGYKPFKCDTCGKGFNRPRNLLRHHGIHTGYKPYKCELCHMAFSQSAHLKSHLISHSPIKPFECQECGKRFAQKFDLKRHDRNNHKGIKPFECKECGKCFAFKVDLNKHMTIHAEIKPHVCDVCGKRFPRKCHLNQHLRTGHAKKDKFNCGLCDMNFRYKTSYEKHVKTHV 1368
+V + + K Y+ + CG+ H +HTG KP++C CGK F+ L +H HTG KPYKC+ C AFS + L+ H +H+ KPFEC ECGK F K L H R H G KPFEC ECGK F+ L H H +P+ CD CGK F K L +H RT H + + C C F K+ H + H
Sbjct: 354 SVHQKVHIRAKPYEYNECGKSCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQR-THTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRT-HTGEKPYKCNQCGKAFGQKSQLRGHHRIHT 557 HSP 7 Score: 120.168 bits (300), Expect = 2.486e-28 Identity = 71/189 (37.57%), Postives = 96/189 (50.79%), Query Frame = 1
Query: 802 CGQCFLRKIHFQQHVVTHTGYKPFKCDTCGKGFNRPRNLLRHHGIHTGYKPYKCELCHMAFSQSAHLKSHLISHSPIKPFECQECGKRFAQKFDLKRHDRNNHKGIKPFECKECGKCFAFKVDLNKHMTIHAEIKPHVCDVCGKRFPRKCHLNQHLRTGHAKKDKFNCGLCDMNFRYKTSYEKHVKTHV 1368
C + F + F H H KP++ + CGK + +L+ HTG KPY+C C AFS+ + L+ H +H+ KP++C C K F+ K L+ H R H G KPFEC ECGK F +K L H H KP C+ CGK F L H RT H + + C C F+ K+ KH +TH
Sbjct: 343 CTETFSYQSTFSVHQKVHIRAKPYEYNECGKSCSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQR-THTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRT-HTGERPYKCDECGKAFKLKSGLRKHHRTHT 529 HSP 8 Score: 101.293 bits (251), Expect = 2.477e-22 Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 1
Query: 754 VQNNTNRKGKSYKCDVCGQCFLRKIHFQQHVVTHTGYKPFKCDTCGKGFNRPRNLLRHHGIHTGYKPYKCELCHMAFSQSAHLKSHLISHSPIKPFECQECGKRFAQKFDLKRHDR 1101
V + T+ K Y+C+ CG+ F +K + + H THTG KP++C+ CGK F+ L +H HTG KPY C C AFSQ ++L+ H +H+ KP++C +CG+ F+QK L+ H +
Sbjct: 579 VHHRTHTGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRTHTGEKPYKCDKCGRTFSQKSSLREHQK 694 HSP 9 Score: 101.293 bits (251), Expect = 2.634e-22 Identity = 71/195 (36.41%), Postives = 90/195 (46.15%), Query Frame = 1
Query: 784 SYKCDVCGQCFLRKIHFQQHVVTHTGYKPFKCDTCGKGFNRPRNLLRHHGIHTGYKPYKCELCHMAFSQSAHLKSHLISHSPIKPFECQECGKRFAQKFDLKRHDRNNHKGIKPFECKECGKCFAFKVDLNKHMTIHAEIKPHVCDVCGKRFPRKCHLNQHLRTGHAKKDKFNCGLCDMNFRYKTSYEKHVKTHV 1368
++K G+ F +K H ++H H G KPF+ GK FNR L H H K C FS + H H KP+E ECGK + L + +H G KP+EC ECGK F+ K L KH H KP+ CD C K F K L H RT H + F C C +F YK+ H +TH
Sbjct: 284 THKTLTGGKSFSQKSHIREHHRVHIGVKPFEY---GKSFNRNSTLPVHQRTHATDKYSDYHPCTETFSYQSTFSVHQKVHIRAKPYEYNECGKSCSMNSHLIW-PQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRT-HTGEKPFECHECGKSFNYKSILIVHQRTHT 473 The following BLAST results are available for this feature:
BLAST of TCONS_00070599 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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