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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070590 ID=TCONS_00070590|Name=TCONS_00070590|organism=Clytia hemisphaerica|type=transcript|length=1376bp
GGAGAAGCCAAACGTGTGTAGAAGCTCCAAATAATGAACAAAAGCAACGA
TTTGCTGAAACCAGAGAAGAAAATATGGTACAACAAAAGATCAGTGATGA
GCGGAAAAGTTATGCCGAGGGATTGACTATTCATGGTTTGAATCGAATTG
TTGTTGGAGGGTCTCTCAACAGAATTGTTTGGACCATTCTCGTAATTGCT
TCCTTTATAGTCGCTGTGTTGATCTCAAAAGACCATTTTGATGCTTATTT
AACACGTCAAAGTCGCACAAACTCTCGATTTGTTACAGAGAAAACTATCC
CTTTCCCGACAATTAGTGTCTGTGATCGGAAAGGTTTGATCAGAGAAAAA
GAGAATTTTGAGGGTAGCGCGCCGCTGTTTCCTAGACCGATAATCACAAA
TCGCGATTTGTTTGAATGCGGAAAAAATATGACCAGTTGTCAATACAACC
AATCAGCGTTCGTTAATGTCGAATACTATACCGGCGATTACGTTTATTTG
AAGTCTTTGACGGGTTTTGTTGAAATTGACAATTTCACTAATTGCTTCAC
CTTTCGTGGATTGACTCAAAAACTTCCCTCCAATTTGGTGAGCATTACAA
TGTCCACGAAAAGAATGGAGAACAATTATTGGAATGAAGTTTTTGTTAAC
ACTCCGTCAGAAACTTTCCATGAAGCGACAGGACTAGCTCACTGGACGAA
CGACGGGTTTTATAACATCAAAATACGAAAACGAATTATTAAGTTACTTG
GCTTACCGTACTCAGACTGTGTTAAAGGGCCAGGATCCCATtctcaaaac
aaatttaaagGGAATTACACCGTTACCAAATGCAAAAAAGGTTGCTATTT
GGAGAGAGTCTTTCAACAGTGTGGTGCTATTCCACCTATGTACAAGAAAC
ATTTGCGAGAACCACGTCAATTTGAAAATAAGACTTTAGTGAACAACACA
TTTGGAAAAGCTTGTATGAATACGATCATGAACGATGAGAAAGTAACTTC
AATATGTGACTCCCTTTGTGAATTACGGCCATGTTACGAAGAACAGATAA
TCACCGAGGCGGAATTTAATCCATTTATCGTTCCAAACCTTGCAGATATA
GcattttctttcccttctttTATGGTAGAAATCATAGAAGAAGTACCAGC
GTACACTTGGCAAGATTTGTTTTCCAATTTCGGTGGTTGTGTTGGTCTAA
TGACTGGAGCATCTATTCTCTCGCTTTTTGAACTTGGAATTTTCTTAGga
ttgttgatttttgattattttgatatttacaCTAAATTTTGGTCCAGCAG
AAAGTAGATTTTTATTTAAGtgctgtttttcatttttgctattttattaT
TGTTTATAAGAGGATGTTCGATGAAG Run BLAST on NCBI protein sequence of TCONS_00070590-protein >TCONS_00070590-protein ID=TCONS_00070590-protein|Name=TCONS_00070590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=434bp
RSQTCVEAPNNEQKQRFAETREENMVQQKISDERKSYAEGLTIHGLNRIV
VGGSLNRIVWTILVIASFIVAVLISKDHFDAYLTRQSRTNSRFVTEKTIP
FPTISVCDRKGLIREKENFEGSAPLFPRPIITNRDLFECGKNMTSCQYNQ
SAFVNVEYYTGDYVYLKSLTGFVEIDNFTNCFTFRGLTQKLPSNLVSITM
STKRMENNYWNEVFVNTPSETFHEATGLAHWTNDGFYNIKIRKRIIKLLG
LPYSDCVKGPGSHSQNKFKGNYTVTKCKKGCYLERVFQQCGAIPPMYKKH
LREPRQFENKTLVNNTFGKACMNTIMNDEKVTSICDSLCELRPCYEEQII
TEAEFNPFIVPNLADIAFSFPSFMVEIIEEVPAYTWQDLFSNFGGCVGLM
TGASILSLFELGIFLGLLIFDYFDIYTKFWSSRK Run BLAST on NCBI transcript from alignment at scaffold_56:655218..656593 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070590 ID=TCONS_00070590|Name=TCONS_00070590|organism=Clytia hemisphaerica|type=transcript|length=1376bp|location=Sequence derived from alignment at scaffold_56:655218..656593 (Clytia hemisphaerica)
CTTCATCGAACATCCTCTTATAAACAAtaataaaatagcaaaaatgaaaa
acagcaCTTAAATAAAAATCTACTTTCTGCTGGACCAAAATTTAGtgtaa
atatcaaaataatcaaaaatcaacaatcCTAAGAAAATTCCAAGTTCAAA
AAGCGAGAGAATAGATGCTCCAGTCATTAGACCAACACAACCACCGAAAT
TGGAAAACAAATCTTGCCAAGTGTACGCTGGTACTTCTTCTATGATTTCT
ACCATAaaagaagggaaagaaaatgCTATATCTGCAAGGTTTGGAACGAT
AAATGGATTAAATTCCGCCTCGGTGATTATCTGTTCTTCGTAACATGGCC
GTAATTCACAAAGGGAGTCACATATTGAAGTTACTTTCTCATCGTTCATG
ATCGTATTCATACAAGCTTTTCCAAATGTGTTGTTCACTAAAGTCTTATT
TTCAAATTGACGTGGTTCTCGCAAATGTTTCTTGTACATAGGTGGAATAG
CACCACACTGTTGAAAGACTCTCTCCAAATAGCAACCTTTTTTGCATTTG
GTAACGGTGTAATTCCctttaaatttgttttgagaATGGGATCCTGGCCC
TTTAACACAGTCTGAGTACGGTAAGCCAAGTAACTTAATAATTCGTTTTC
GTATTTTGATGTTATAAAACCCGTCGTTCGTCCAGTGAGCTAGTCCTGTC
GCTTCATGGAAAGTTTCTGACGGAGTGTTAACAAAAACTTCATTCCAATA
ATTGTTCTCCATTCTTTTCGTGGACATTGTAATGCTCACCAAATTGGAGG
GAAGTTTTTGAGTCAATCCACGAAAGGTGAAGCAATTAGTGAAATTGTCA
ATTTCAACAAAACCCGTCAAAGACTTCAAATAAACGTAATCGCCGGTATA
GTATTCGACATTAACGAACGCTGATTGGTTGTATTGACAACTGGTCATAT
TTTTTCCGCATTCAAACAAATCGCGATTTGTGATTATCGGTCTAGGAAAC
AGCGGCGCGCTACCCTCAAAATTCTCTTTTTCTCTGATCAAACCTTTCCG
ATCACAGACACTAATTGTCGGGAAAGGGATAGTTTTCTCTGTAACAAATC
GAGAGTTTGTGCGACTTTGACGTGTTAAATAAGCATCAAAATGGTCTTTT
GAGATCAACACAGCGACTATAAAGGAAGCAATTACGAGAATGGTCCAAAC
AATTCTGTTGAGAGACCCTCCAACAACAATTCGATTCAAACCATGAATAG
TCAATCCCTCGGCATAACTTTTCCGCTCATCACTGATCTTTTGTTGTACC
ATATTTTCTTCTCTGGTTTCAGCAAATCGTTGCTTTTGTTCATTATTTGG
AGCTTCTACACACGTTTGGCTTCTCC Coding sequence (CDS) from alignment at scaffold_56:655218..656593 >TCONS_00070590 ID=TCONS_00070590|Name=TCONS_00070590|organism=Clytia hemisphaerica|type=CDS|length=1305bp|location=Sequence derived from alignment at scaffold_56:655218..656593 (Clytia hemisphaerica)
CTACTTTCTGCTGGACCAAAATTTAGtgtaaatatcaaaataatcaaaaa
tcaacaatcCTAAGAAAATTCCAAGTTCAAAAAGCGAGAGAATAGATGCT
CCAGTCATTAGACCAACACAACCACCGAAATTGGAAAACAAATCTTGCCA
AGTGTACGCTGGTACTTCTTCTATGATTTCTACCATAaaagaagggaaag
aaaatgCTATATCTGCAAGGTTTGGAACGATAAATGGATTAAATTCCGCC
TCGGTGATTATCTGTTCTTCGTAACATGGCCGTAATTCACAAAGGGAGTC
ACATATTGAAGTTACTTTCTCATCGTTCATGATCGTATTCATACAAGCTT
TTCCAAATGTGTTGTTCACTAAAGTCTTATTTTCAAATTGACGTGGTTCT
CGCAAATGTTTCTTGTACATAGGTGGAATAGCACCACACTGTTGAAAGAC
TCTCTCCAAATAGCAACCTTTTTTGCATTTGGTAACGGTGTAATTCCctt
taaatttgttttgagaATGGGATCCTGGCCCTTTAACACAGTCTGAGTAC
GGTAAGCCAAGTAACTTAATAATTCGTTTTCGTATTTTGATGTTATAAAA
CCCGTCGTTCGTCCAGTGAGCTAGTCCTGTCGCTTCATGGAAAGTTTCTG
ACGGAGTGTTAACAAAAACTTCATTCCAATAATTGTTCTCCATTCTTTTC
GTGGACATTGTAATGCTCACCAAATTGGAGGGAAGTTTTTGAGTCAATCC
ACGAAAGGTGAAGCAATTAGTGAAATTGTCAATTTCAACAAAACCCGTCA
AAGACTTCAAATAAACGTAATCGCCGGTATAGTATTCGACATTAACGAAC
GCTGATTGGTTGTATTGACAACTGGTCATATTTTTTCCGCATTCAAACAA
ATCGCGATTTGTGATTATCGGTCTAGGAAACAGCGGCGCGCTACCCTCAA
AATTCTCTTTTTCTCTGATCAAACCTTTCCGATCACAGACACTAATTGTC
GGGAAAGGGATAGTTTTCTCTGTAACAAATCGAGAGTTTGTGCGACTTTG
ACGTGTTAAATAAGCATCAAAATGGTCTTTTGAGATCAACACAGCGACTA
TAAAGGAAGCAATTACGAGAATGGTCCAAACAATTCTGTTGAGAGACCCT
CCAACAACAATTCGATTCAAACCATGAATAGTCAATCCCTCGGCATAACT
TTTCCGCTCATCACTGATCTTTTGTTGTACCATATTTTCTTCTCTGGTTT
CAGCAAATCGTTGCTTTTGTTCATTATTTGGAGCTTCTACACACGTTTGG
CTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070590-exon-scaffold_56-1491911889:655218..656593 | TCONS_00070590-exon-scaffold_56-1491911889:655218..656593 | Clytia hemisphaerica | exon |
| TCONS_00070590-exon-scaffold_56-1510915933:655218..656593 | TCONS_00070590-exon-scaffold_56-1510915933:655218..656593 | Clytia hemisphaerica | exon |
| TCONS_00070590-exon-scaffold_56-1575043694:655218..656593 | TCONS_00070590-exon-scaffold_56-1575043694:655218..656593 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:655218..656593 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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