TCONS_00070588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070588
Unique NameTCONS_00070588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070588 ID=TCONS_00070588|Name=TCONS_00070588|organism=Clytia hemisphaerica|type=transcript|length=462bp
ctttttctttttccttataaaatctcttttttttataatatcttaATCAT
TGATCATGTGGTGGTCATCGACTTTGGATTGTGCTGAAGTCAATTTGTCA
GCTGTGACATGGTTGTTTTATCTGTAACTTGTGGAATTGTTGCTTTTGTA
TCAATTCTATATTTACAATCANATGATTTTCTGAACAACTTCAGAGATCC
GCGTCAAGCTTTGcataaatttgagaaatttggaGCCAGTATAGTATGCT
TGTGAAGTCTGATCCATCAGTCAGCGTGCGTTCAGAAGTTATTCAACTTT
TGGCAAACTTCAGATTTTATGCATCAAACTCTCTTAGTAAAAACTTTGCT
CGTAACGATGTTTTGAAGAAATGGAAACTTAGATATAAATAAACTTATCC
TATTGTAGTAGACACATTTGCGCAATTTACGTTTGTGTGGTTTGTGTCAA
GGAGAATGAACA
Run BLAST on NCBI

transcript from alignment at scaffold_56:622853..623314

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070588 ID=TCONS_00070588|Name=TCONS_00070588|organism=Clytia hemisphaerica|type=transcript|length=462bp|location=Sequence derived from alignment at scaffold_56:622853..623314 (Clytia hemisphaerica)
TGTTCATTCTCCTTGACACAAACCACACAAACGTAAATTGCGCAAATGTG
TCTACTACAATAGGATAAGTTTATTTATATCTAAGTTTCCATTTCTTCAA
AACATCGTTACGAGCAAAGTTTTTACTAAGAGAGTTTGATGCATAAAATC
TGAAGTTTGCCAAAAGTTGAATAACTTCTGAACGCACGCTGACTGATGGA
TCAGACTTCACAAGCATACTATACTGGCtccaaatttctcaaatttatgC
AAAGCTTGACGCGGATCTCTGAAGTTGTTCAGAAAATCATNTGATTGTAA
ATATAGAATTGATACAAAAGCAACAATTCCACAAGTTACAGATAAAACAA
CCATGTCACAGCTGACAAATTGACTTCAGCACAATCCAAAGTCGATGACC
ACCACATGATCAATGATtaagatattataaaaaaaagagattttataagg
aaaaagaaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043929XLOC_043929Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070588-exon-scaffold_56-1491911889:622853..623314TCONS_00070588-exon-scaffold_56-1491911889:622853..623314Clytia hemisphaericaexon
TCONS_00070588-exon-scaffold_56-1510915933:622853..623314TCONS_00070588-exon-scaffold_56-1510915933:622853..623314Clytia hemisphaericaexon
TCONS_00070588-exon-scaffold_56-1575043694:622853..623314TCONS_00070588-exon-scaffold_56-1575043694:622853..623314Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:622853..623314 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42065	0.355729	1.27019	1.6432	0.189106	0.298868	2.57371	1.03303	2.90065	0.804141	1.13656	1.73186	0.746091	0.311029	1.19439	1.79447	0.315806	0.971074	0.469397	1.16531	2.52838	2.53203	0.643132	1.7541	0	0.268737	3.46105	3.60761	2.17899	3.01292
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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