TCONS_00070587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070587
Unique NameTCONS_00070587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070587 ID=TCONS_00070587|Name=TCONS_00070587|organism=Clytia hemisphaerica|type=transcript|length=245bp
TAAACGAAATCGATTCATGGAGACGTACACCACGTTTTTCAGCAAGCATC
ACGGCCAATCTTTTGTAGAATGTTTGGCATTCACGTCCCATTCCTCCGTT
TGTAGAAAATACTAGTGGGGTGAAGGTACCATTTTCGACACTGTTCACAC
GTTCATTGTAATGTCGCTTTTTCTCGTTTTCGTTTCTTTGGAAGCACTTG
CTGAGCTCCAAACCCCTGTACCTTCGAGCGCTTACGTCAAAGACC
Run BLAST on NCBI

transcript from alignment at scaffold_56:573576..573820

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070587 ID=TCONS_00070587|Name=TCONS_00070587|organism=Clytia hemisphaerica|type=transcript|length=245bp|location=Sequence derived from alignment at scaffold_56:573576..573820 (Clytia hemisphaerica)
GGTCTTTGACGTAAGCGCTCGAAGGTACAGGGGTTTGGAGCTCAGCAAGT
GCTTCCAAAGAAACGAAAACGAGAAAAAGCGACATTACAATGAACGTGTG
AACAGTGTCGAAAATGGTACCTTCACCCCACTAGTATTTTCTACAAACGG
AGGAATGGGACGTGAATGCCAAACATTCTACAAAAGATTGGCCGTGATGC
TTGCTGAAAAACGTGGTGTACGTCTCCATGAATCGATTTCGTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043928XLOC_043928Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070587-exon-scaffold_56-1491911889:573576..573820TCONS_00070587-exon-scaffold_56-1491911889:573576..573820Clytia hemisphaericaexon
TCONS_00070587-exon-scaffold_56-1510915933:573576..573820TCONS_00070587-exon-scaffold_56-1510915933:573576..573820Clytia hemisphaericaexon
TCONS_00070587-exon-scaffold_56-1575043694:573576..573820TCONS_00070587-exon-scaffold_56-1575043694:573576..573820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:573576..573820 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.830086	1.61893	1.87973	1.83902	0	2.65374	2.13441	2.99732	4.10859	5.19864	0.840988	2.76416	4.41651	4.01327	1.41405	2.02332	1.24628	0	0	0.923368	0	1.1744	0	0	0	1.5908	1.13821	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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