TCONS_00070576 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070576
Unique NameTCONS_00070576
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1775

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070576 ID=TCONS_00070576|Name=TCONS_00070576|organism=Clytia hemisphaerica|type=transcript|length=1775bp
gaaaagacaaagaagcaattcgctaaggaattctcgtccttcatccagct
ccgctataacatatccctgatcTCATCAACTCCATTACATAGCAACAGAC
AATTTGCAGACACTCAGGATGGGTAGGTTTACTGACATCAATTTCATACC
TTATCCACCCAGTCGCGGTATTATGTATAAAGAAGGATACCGAATAATGA
TACAATTTCGTCACATAGAACGAAGATGGTTTTGTTGTAATATGACGTAG
CTGGGCCTTGTTGTGTACATTCCGTAACTGTTATCGGGTTGTCAACTTTG
TTTGTCTTTTGTCTATCAAACCGAAAGCGGGCGAGTGTCAATAGGGCGGA
AATGATGGGTCTCTTTCAGGAGTAGCAAGAGAAATAACACCCTCTTGATG
AAAGGATATGTTTACGTAACCGAAGATCAGTATAAAAGCTCTATCCATCC
AAATTGAAAATCATCCTTCATCTTTACTTTGAATAAACCTGTAAAGGGAT
AACaacaaagtcttcaagatgatGAAACTTACAATTTTGGCTGTCTGCAT
CACCATTGCAGCATGTGGATCCTACTTACCTGAAACCGATGCCGACGGCA
ATCCGATCATTGTACCAACAAAACCACCAGTCTTCAACCCCAGATGTCcA
AGACGTGCCAGAAATGTTTGCAAAGGAAAATTCACCTTGAGAGCATACAA
ACGTAACAAGAATGATGAAACAGGACGTGAATTCATTGAATGCCGTGCGC
TCAAATGCTTCCGTTGTCCACGATTCACCCGATTCTTGGATGAGTGTCAA
ACTTGCGTCCACGAACGTGACTTCGACAAAGAAGAGGTCAAAGAACgatG
CCTCAAACGAATGGAAGAGGAAGAAAAGgaacaagaagaaaaagatcCCA
TCTGTTACAACGACAGTTGCCCATTCTGCCCAAAAGACGACATCAGATAC
CAATACCCAGCTTTCGACAACAGACGTGTTTACTGTCAATGTCCACATAA
AATGGACCCTATCCGAAAAATCTATCCCTTTCCCGTCTGCAATATCTGCC
CGGCTGGAACAGTTTTCAAGCAACCAGAAGTTGGAAAGTCTGGATGTTGT
GTCGCTCCAGGCCATGAAGGACCACATGagtaaaaatgaaaagattaaaa
atcacaaatgcacctcatgcaaaaaattgatatatgaacaactttgtttt
ttatttccaaattaatttattatctacaattttcaatgtttgttagattt
tatttattgcTGACTTAATTACAAGAAACATTTGACGTATACTTTTTTCA
GATTATACAAAATGAAATTAATGAGCTTTCTTTCATCCCACGAGTTATTA
CCCTAAACTAGCCATCCCGGCCTCGTCCGAGAAGACTCTTCACCGTGATA
ATTAAGCTCGCTGTTATTGTTgagaaaataaatgtatttttacTTAAACG
ATTTCTTGCATTTTCCAAGGAGAATGAACAATAATATTTCCTATATCGAA
AGGAACATCCATTAAAACATTTTCctgtattttccaagaaaagttataca
gaaaatatttcttaaattataCTAGTATTTCTaaggaaaattagataaaa
cacatttcttgtattttccaaggaaaaaattACATGAGACAACCTTAATA
TGTTTCAAGAAAGTTATTGAAGTTAAACAATTTTTGCTACTTTCACCaag
ttgatttttcaagaaaatcgcTTTcttaccatagtataagaaagccgcgg
ctggaatgatgacgctattgttttt
Run BLAST on NCBI

protein sequence of TCONS_00070576-protein

>TCONS_00070576-protein ID=TCONS_00070576-protein|Name=TCONS_00070576-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MMKLTILAVCITIAACGSYLPETDADGNPIIVPTKPPVFNPRCPRRARNV
CKGKFTLRAYKRNKNDETGREFIECRALKCFRCPRFTRFLDECQTCVHER
DFDKEEVKERCLKRMEEEEKEQEEKDPICYNDSCPFCPKDDIRYQYPAFD
NRRVYCQCPHKMDPIRKIYPFPVCNICPAGTVFKQPEVGKSGCCVAPGHE
GPHE
Run BLAST on NCBI

transcript from alignment at scaffold_56:934871..938165-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070576 ID=TCONS_00070576|Name=TCONS_00070576|organism=Clytia hemisphaerica|type=transcript|length=3295bp|location=Sequence derived from alignment at scaffold_56:934871..938165- (Clytia hemisphaerica)
GAAAAGACAAAGAAGCAATTCGCTAAGGAATTCTCGTCCTTCATCCAGCT
CCGCTATAACATATCCCTGATCTCATCAACTCCATTACATAGCAACAGAC
AATTTGCAGACACTCAGGATGGGTAGGTTTACTGACATCAATTTCATACC
TTATCCACCCAGTCGCGGTATTATGTATAAAGAAGGATACCGAATAATGA
TACAATTTCGTCACATAGAACGAAGATGGTTTTGTTGTAATATGACGTAG
CTGGGCCTTGTTGTGTACATTCCGTAACTGTTATCGGGTTGTCAACTTTG
TTTGTCTTTTGTCTATCAAACCGAAAGCGGGCGAGTGTCAATAGGGCGGA
AATGATGGGTCTCTTTCAGGAGTAGCAAGAGAAATAACACCCTCTTGATG
AAAGGATATGTTTACGTAACCGAAGATCAGTATAAAAGCTCTATCCATCC
AAATTGAAAATCATCCTTCATCTTTACTTTGAATAAACCTGTAAAGGGAT
AACAACAAAGTCTTCAAGATGATGAAACTTACAATTTTGGCTGTCTGCAT
CACCATTGCAGCATGTGGTATGTACTTGTTGACAAAATTATTTCTTAAAC
CGCAATCTTTAATTAATTTATTACTTTCTCAATCATCTGAGTGCTTCCTT
AATTCATTGAAATTATGATACCTAGACAGAAACTGTTGCAGAAAATTTTG
GACACTATGAAATACAAATTCATATTCGTCGATTATCATTAAATAAGGTG
GACCACTTGAAACAAAGTTTTTCAATTAAAAAATTGAAAAATGTCTCAAG
TGGCCCCGGACCTTTGAGAAACAATTTTGTTAAACTTTGACTTCAACTTT
TTTCCTTCCAGGATCCTACTTACCTGAAACCGATGCCGACGGCAATCCGA
TCATTGTACCAACAAGACCACCAGTCTTCAACCCCAGATGTCGTAAGTCA
ACAAGAAGAATTACCCCAAACTCGAACTCAGTGCCTTTTTTATAATTCTG
ATAGCGCTCACGAAAGATTGCAATACGTTTATCAGTAAAAAATCCAAAAA
GTGGTATGCAAGTAGCTCTGGGTACAAATAAAGGATTGGAATTCTAACTC
CCAGCAATTCTAAAATTATGTAATGCAGCAATTTGAAGGTTTTATGTCAA
AACAAGGACTAATGAAATATTTGTTCTACAACATACACCGACTAGACTAA
ACCGAGCACGTGGCTTGCAGTACATTTATAACAGAGACTAGATGACTATT
TTGAAGATTATAAAAAAAATATANTCAACTTTTTTCCTTCCAGGATCCTA
CTTACCTGAAACCGATGCCGACGGCAATCCGATCATTGTACCAACAAAAC
CACCAGTCTTCAACCCCAGATGTCGTAAGTCAACAAGAAGAATTACCCCA
AACTCAAACCCAGTGCCTTTTTTATAATTCTGATAGCGCTCACGAAAGAT
TGCAATACGTTTATCAGTAACAAGTCCAAAAAGTGGTGCAAGTAGCTCTG
GCGGGTATAAAGGATTGGAATTCTAACTCCCAGCAATTCTAAAATTATGT
AATGCAGCAATTTGAAGGTTTTATGTCAAAACAAGGACTAATGAAATATT
TGTTCTACAACATACACCGACTAGACGTGATCGAACACGTGGCGTGCAGT
ACATTTATAAGAGAGACTAGATTACTATTTTGAAGATTATATAAATAAAA
TTTCTTTCCTTTTTCAGCAAGACGTGCCAGAAATGTTTGCAAAGGAAAAT
TCACCTTGAGAGCATACAAACGTAACAAGAATGATGAAACAGGACGTGAA
TTCATTGAATGCCGTGCGCTCAAATGCTTCCGTTGTCCACGATTCACCCG
ATTCTTGGATGAGTGTCAAACTTGCGTCCACGAACGTGACTTCGACAAAG
AAGAGGTCAAAGAACGTAAGTCGATACCACCATTCAAACCATATTTTCCT
TCTTTAAATGGTCTTGGAAATATACCAATTACTTCTTATCCGTTAAATGG
TGAATTTATTCTCAAAAATTATTTCCAATCTGTTAAATGGAGACTCTTTC
TTTTTTTCTTCAGGATGCCTCAAACGAATGGAAGAGGAAGAAAAGGAACA
AGAAGAAAAAGATCCCATCTGTAAGTAAATTACTCTTGCCCAAACCTCCA
GTAGCGACCATAAGCGACCACATACTCATCGAAAAAAAAACTCTAAACTA
AGGAGGTCACATAATAACTTATAAAAAAGCAATTCTACAAAATCATTTTT
TTCATCAAAGAAAATCATTACCAAAATTTGACGGTGATTCTAATCACAAA
GAGCGAAATAAGTACTCAAACTTCTAAATGCTTTTTTCAAGCAATTCTTA
GGTATGTAGTGAACATTTAGGCTCATTTGATTAAAATGACTCTTCATTCA
AAAACATTTCTTTTATATATCAGGTTACAACGACAGTTGCCCATTCTGCC
CAAAAGACGACATCAGATACCAATACCCAGCTTTCGACAACAGACGTGTT
TACTGTCAATGTCCACATAAAATGGACCCTATCCGAAAAATCTATCCCTT
TCCCGTCTGCAATATCTGCCCGGCTGGAACAGTTTTCAAGCAACCAGAAG
TTGGAAAGTCTGGATGTTGTGTCGCTCCAGGCCATGAAGGACCACATGAG
TAAAAATGAAAAGATTAAAAATCACAAATGCACCTCATGCAAAAAATTGA
TATATGAACAACTTTGTTTTTTATTTCCAAATTAATTTATTATCTACAAT
TTTCAATGTTTGTTAGATTTTATTTATTGCTGACTTAATTACAAGAAACA
TTTGACGTATACTTTTTTCAGATTATACAAAATGAAATTAATGAGCTTTC
TTTCATCCCACGAGTTATTACCCTAAACTAGCCATCCCGGCCTCGTCCGA
GAAGACTCTTCACCGTGATAATTAAGCTCGCTGTTATTGTTGAGAAAATA
AATGTATTTTTACTTAAACGATTTCTTGCATTTTCCAAGGAGAATGAACA
ATAATATTTCCTATATCGAAAGGAACATCCATTAAAACATTTTCCTGTAT
TTTCCAAGAAAAGTTATACAGAAAATATTTCTTAAATTATACTAGTATTT
CTAAGGAAAATTAGATAAAACACATTTCTTGTATTTTCCAAGGAAAAAAT
TACATGAGACAACCTTAATATGTTTCAAGAAAGTTATTGAAGTTAAACAA
TTTTTGCTACTTTCACCAAGTTGATTTTTCAAGAAAATCGCTTTCTTACC
ATAGTATAAGAAAGCCGCGGCTGGAATGATGACGCTATTGTTTTT

Coding sequence (CDS) from alignment at scaffold_56:934871..938165-

>TCONS_00070576 ID=TCONS_00070576|Name=TCONS_00070576|organism=Clytia hemisphaerica|type=CDS|length=3075bp|location=Sequence derived from alignment at scaffold_56:934871..938165- (Clytia hemisphaerica)
GTTACAACGACAGTTGCCCATTCTGCCCAAAAGACGACATCAGATACCAA
TACCCAGCTTTCGACAACAGACGTGTTTACTGTCAATGTCCACATAAAAT
GGACCCTATCCGAAAAATCTATCCCTTTCCCGTCTGCAATATCTGCCCGG
CTGGAACAGTTTTCAAGCAACCAGAAGTTGGAAAGTCTGGATGTTGTGTC
GCTCCAGGCCATGAAGGACCACATGAGTAAGATGCCTCAAACGAATGGAA
GAGGAAGAAAAGGAACAAGAAGAAAAAGATCCCATCTCAAGACGTGCCAG
AAATGTTTGCAAAGGAAAATTCACCTTGAGAGCATACAAACGTAACAAGA
ATGATGAAACAGGACGTGAATTCATTGAATGCCGTGCGCTCAAATGCTTC
CGTTGTCCACGATTCACCCGATTCTTGGATGAGTGTCAAACTTGCGTCCA
CGAACGTGACTTCGACAAAGAAGAGGTCAAAGAACGATCCTACTTACCTG
AAACCGATGCCGACGGCAATCCGATCATTGTACCAACAAAACCACCAGTC
TTCAACCCCAGATGTCATGATGAAACTTACAATTTTGGCTGTCTGCATCA
CCATTGCAGCATGTGGTTACAACGACAGTTGCCCATTCTGCCCAAAAGAC
GACATCAGATACCAATACCCAGCTTTCGACAACAGACGTGTTTACTGTCA
ATGTCCACATAAAATGGACCCTATCCGAAAAATCTATCCCTTTCCCGTCT
GCAATATCTGCCCGGCTGGAACAGTTTTCAAGCAACCAGAAGTTGGAAAG
TCTGGATGTTGTGTCGCTCCAGGCCATGAAGGACCACATGAGTAAGATGC
CTCAAACGAATGGAAGAGGAAGAAAAGGAACAAGAAGAAAAAGATCCCAT
CTCAAGACGTGCCAGAAATGTTTGCAAAGGAAAATTCACCTTGAGAGCAT
ACAAACGTAACAAGAATGATGAAACAGGACGTGAATTCATTGAATGCCGT
GCGCTCAAATGCTTCCGTTGTCCACGATTCACCCGATTCTTGGATGAGTG
TCAAACTTGCGTCCACGAACGTGACTTCGACAAAGAAGAGGTCAAAGAAC
GATCCTACTTACCTGAAACCGATGCCGACGGCAATCCGATCATTGTACCA
ACAAAACCACCAGTCTTCAACCCCAGATGTCATGATGAAACTTACAATTT
TGGCTGTCTGCATCACCATTGCAGCATGTGGTTACAACGACAGTTGCCCA
TTCTGCCCAAAAGACGACATCAGATACCAATACCCAGCTTTCGACAACAG
ACGTGTTTACTGTCAATGTCCACATAAAATGGACCCTATCCGAAAAATCT
ATCCCTTTCCCGTCTGCAATATCTGCCCGGCTGGAACAGTTTTCAAGCAA
CCAGAAGTTGGAAAGTCTGGATGTTGTGTCGCTCCAGGCCATGAAGGACC
ACATGAGTAAGATGCCTCAAACGAATGGAAGAGGAAGAAAAGGAACAAGA
AGAAAAAGATCCCATCTCAAGACGTGCCAGAAATGTTTGCAAAGGAAAAT
TCACCTTGAGAGCATACAAACGTAACAAGAATGATGAAACAGGACGTGAA
TTCATTGAATGCCGTGCGCTCAAATGCTTCCGTTGTCCACGATTCACCCG
ATTCTTGGATGAGTGTCAAACTTGCGTCCACGAACGTGACTTCGACAAAG
AAGAGGTCAAAGAACGATCCTACTTACCTGAAACCGATGCCGACGGCAAT
CCGATCATTGTACCAACAAAACCACCAGTCTTCAACCCCAGATGTCATGA
TGAAACTTACAATTTTGGCTGTCTGCATCACCATTGCAGCATGTGGTTAC
AACGACAGTTGCCCATTCTGCCCAAAAGACGACATCAGATACCAATACCC
AGCTTTCGACAACAGACGTGTTTACTGTCAATGTCCACATAAAATGGACC
CTATCCGAAAAATCTATCCCTTTCCCGTCTGCAATATCTGCCCGGCTGGA
ACAGTTTTCAAGCAACCAGAAGTTGGAAAGTCTGGATGTTGTGTCGCTCC
AGGCCATGAAGGACCACATGAGTAAGATGCCTCAAACGAATGGAAGAGGA
AGAAAAGGAACAAGAAGAAAAAGATCCCATCTCAAGACGTGCCAGAAATG
TTTGCAAAGGAAAATTCACCTTGAGAGCATACAAACGTAACAAGAATGAT
GAAACAGGACGTGAATTCATTGAATGCCGTGCGCTCAAATGCTTCCGTTG
TCCACGATTCACCCGATTCTTGGATGAGTGTCAAACTTGCGTCCACGAAC
GTGACTTCGACAAAGAAGAGGTCAAAGAACGATCCTACTTACCTGAAACC
GATGCCGACGGCAATCCGATCATTGTACCAACAAAACCACCAGTCTTCAA
CCCCAGATGTCATGATGAAACTTACAATTTTGGCTGTCTGCATCACCATT
GCAGCATGTGGTTACAACGACAGTTGCCCATTCTGCCCAAAAGACGACAT
CAGATACCAATACCCAGCTTTCGACAACAGACGTGTTTACTGTCAATGTC
CACATAAAATGGACCCTATCCGAAAAATCTATCCCTTTCCCGTCTGCAAT
ATCTGCCCGGCTGGAACAGTTTTCAAGCAACCAGAAGTTGGAAAGTCTGG
ATGTTGTGTCGCTCCAGGCCATGAAGGACCACATGAGTAAGATGCCTCAA
ACGAATGGAAGAGGAAGAAAAGGAACAAGAAGAAAAAGATCCCATCTCAA
GACGTGCCAGAAATGTTTGCAAAGGAAAATTCACCTTGAGAGCATACAAA
CGTAACAAGAATGATGAAACAGGACGTGAATTCATTGAATGCCGTGCGCT
CAAATGCTTCCGTTGTCCACGATTCACCCGATTCTTGGATGAGTGTCAAA
CTTGCGTCCACGAACGTGACTTCGACAAAGAAGAGGTCAAAGAACGATCC
TACTTACCTGAAACCGATGCCGACGGCAATCCGATCATTGTACCAACAAA
ACCACCAGTCTTCAACCCCAGATGTCATGATGAAACTTACAATTTTGGCT
GTCTGCATCACCATTGCAGCATGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043917XLOC_043917Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070576-exon-scaffold_56-1575043694:937599..938165TCONS_00070576-exon-scaffold_56-1575043694:937599..938165Clytia hemisphaericaexon
TCONS_00070576-exon-scaffold_56-1575043694:936792..936872TCONS_00070576-exon-scaffold_56-1575043694:936792..936872Clytia hemisphaericaexon
TCONS_00070576-exon-scaffold_56-1575043694:936251..936448TCONS_00070576-exon-scaffold_56-1575043694:936251..936448Clytia hemisphaericaexon
TCONS_00070576-exon-scaffold_56-1575043694:936046..936102TCONS_00070576-exon-scaffold_56-1575043694:936046..936102Clytia hemisphaericaexon
TCONS_00070576-exon-scaffold_56-1575043694:934871..935742TCONS_00070576-exon-scaffold_56-1575043694:934871..935742Clytia hemisphaericaexon
TCONS_00070576-exon-scaffold_56-1510915933:937599..938165TCONS_00070576-exon-scaffold_56-1510915933:937599..938165Clytia hemisphaericaexon
TCONS_00070576-exon-scaffold_56-1510915933:936792..936872TCONS_00070576-exon-scaffold_56-1510915933:936792..936872Clytia hemisphaericaexon
TCONS_00070576-exon-scaffold_56-1510915933:936251..936448TCONS_00070576-exon-scaffold_56-1510915933:936251..936448Clytia hemisphaericaexon
TCONS_00070576-exon-scaffold_56-1510915933:936046..936102TCONS_00070576-exon-scaffold_56-1510915933:936046..936102Clytia hemisphaericaexon
TCONS_00070576-exon-scaffold_56-1510915933:934871..935742TCONS_00070576-exon-scaffold_56-1510915933:934871..935742Clytia hemisphaericaexon
TCONS_00070576-exon-scaffold_56-1491911889:937599..938165TCONS_00070576-exon-scaffold_56-1491911889:937599..938165Clytia hemisphaericaexon
TCONS_00070576-exon-scaffold_56-1491911889:936792..936872TCONS_00070576-exon-scaffold_56-1491911889:936792..936872Clytia hemisphaericaexon
TCONS_00070576-exon-scaffold_56-1491911889:936251..936448TCONS_00070576-exon-scaffold_56-1491911889:936251..936448Clytia hemisphaericaexon
TCONS_00070576-exon-scaffold_56-1491911889:936046..936102TCONS_00070576-exon-scaffold_56-1491911889:936046..936102Clytia hemisphaericaexon
TCONS_00070576-exon-scaffold_56-1491911889:934871..935742TCONS_00070576-exon-scaffold_56-1491911889:934871..935742Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070576-proteinTCONS_00070576-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:934871..938165 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.169993	0.101943	0	1.61141	2.7542	0.517147	5.48186	2.07461	7.9253	0	0	0.337905	0	0.423644	0.52437	0.246605	0.353186	0	0	0.102965	0.0899782	0.0786862	0	0.434931	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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