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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070575 ID=TCONS_00070575|Name=TCONS_00070575|organism=Clytia hemisphaerica|type=transcript|length=1775bp gaaaagacaaagaagcaattcgctaaggaattctcgtccttcatccagct ccgctataacatatccctgatcTCATCAACTCCATTACATAGCAACAGAC AATTTGCAGACACTCAGGATGGGTAGGTTTACTGACATCAATTTCATACC TTATCCACCCAGTCGCGGTATTATGTATAAAGAAGGATACCGAATAATGA TACAATTTCGTCACATAGAACGAAGATGGTTTTGTTGTAATATGACGTAG CTGGGCCTTGTTGTGTACATTCCGTAACTGTTATCGGGTTGTCAACTTTG TTTGTCTTTTGTCTATCAAACCGAAAGCGGGCGAGTGTCAATAGGGCGGA AATGATGGGTCTCTTTCAGGAGTAGCAAGAGAAATAACACCCTCTTGATG AAAGGATATGTTTACGTAACCGAAGATCAGTATAAAAGCTCTATCCATCC AAATTGAAAATCATCCTTCATCTTTACTTTGAATAAACCTGTAAAGGGAT AACaacaaagtcttcaagatgatGAAACTTACAATTTTGGCTGTCTGCAT CACCATTGCAGCATGTGGATCCTACTTACCTGAAACCGATGCCGACGGCA ATCCGATCATTGTACCAACAAGACCACCAGTCTTCAACCCCAGATGTCcA AGACGTGCCAGAAATGTTTGCAAAGGAAAATTCACCTTGAGAGCATACAA ACGTAACAAGAATGATGAAACAGGACGTGAATTCATTGAATGCCGTGCGC TCAAATGCTTCCGTTGTCCACGATTCACCCGATTCTTGGATGAGTGTCAA ACTTGCGTCCACGAACGTGACTTCGACAAAGAAGAGGTCAAAGAACgatG CCTCAAACGAATGGAAGAGGAAGAAAAGgaacaagaagaaaaagatcCCA TCTGTTACAACGACAGTTGCCCATTCTGCCCAAAAGACGACATCAGATAC CAATACCCAGCTTTCGACAACAGACGTGTTTACTGTCAATGTCCACATAA AATGGACCCTATCCGAAAAATCTATCCCTTTCCCGTCTGCAATATCTGCC CGGCTGGAACAGTTTTCAAGCAACCAGAAGTTGGAAAGTCTGGATGTTGT GTCGCTCCAGGCCATGAAGGACCACATGagtaaaaatgaaaagattaaaa atcacaaatgcacctcatgcaaaaaattgatatatgaacaactttgtttt ttatttccaaattaatttattatctacaattttcaatgtttgttagattt tatttattgcTGACTTAATTACAAGAAACATTTGACGTATACTTTTTTCA GATTATACAAAATGAAATTAATGAGCTTTCTTTCATCCCACGAGTTATTA CCCTAAACTAGCCATCCCGGCCTCGTCCGAGAAGACTCTTCACCGTGATA ATTAAGCTCGCTGTTATTGTTgagaaaataaatgtatttttacTTAAACG ATTTCTTGCATTTTCCAAGGAGAATGAACAATAATATTTCCTATATCGAA AGGAACATCCATTAAAACATTTTCctgtattttccaagaaaagttataca gaaaatatttcttaaattataCTAGTATTTCTaaggaaaattagataaaa cacatttcttgtattttccaaggaaaaaattACATGAGACAACCTTAATA TGTTTCAAGAAAGTTATTGAAGTTAAACAATTTTTGCTACTTTCACCaag ttgatttttcaagaaaatcgcTTTcttaccatagtataagaaagccgcgg ctggaatgatgacgctattgttttt Run BLAST on NCBI transcript from alignment at scaffold_56:934871..938165- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070575 ID=TCONS_00070575|Name=TCONS_00070575|organism=Clytia hemisphaerica|type=transcript|length=3295bp|location=Sequence derived from alignment at scaffold_56:934871..938165- (Clytia hemisphaerica) GAAAAGACAAAGAAGCAATTCGCTAAGGAATTCTCGTCCTTCATCCAGCT
CCGCTATAACATATCCCTGATCTCATCAACTCCATTACATAGCAACAGAC
AATTTGCAGACACTCAGGATGGGTAGGTTTACTGACATCAATTTCATACC
TTATCCACCCAGTCGCGGTATTATGTATAAAGAAGGATACCGAATAATGA
TACAATTTCGTCACATAGAACGAAGATGGTTTTGTTGTAATATGACGTAG
CTGGGCCTTGTTGTGTACATTCCGTAACTGTTATCGGGTTGTCAACTTTG
TTTGTCTTTTGTCTATCAAACCGAAAGCGGGCGAGTGTCAATAGGGCGGA
AATGATGGGTCTCTTTCAGGAGTAGCAAGAGAAATAACACCCTCTTGATG
AAAGGATATGTTTACGTAACCGAAGATCAGTATAAAAGCTCTATCCATCC
AAATTGAAAATCATCCTTCATCTTTACTTTGAATAAACCTGTAAAGGGAT
AACAACAAAGTCTTCAAGATGATGAAACTTACAATTTTGGCTGTCTGCAT
CACCATTGCAGCATGTGGTATGTACTTGTTGACAAAATTATTTCTTAAAC
CGCAATCTTTAATTAATTTATTACTTTCTCAATCATCTGAGTGCTTCCTT
AATTCATTGAAATTATGATACCTAGACAGAAACTGTTGCAGAAAATTTTG
GACACTATGAAATACAAATTCATATTCGTCGATTATCATTAAATAAGGTG
GACCACTTGAAACAAAGTTTTTCAATTAAAAAATTGAAAAATGTCTCAAG
TGGCCCCGGACCTTTGAGAAACAATTTTGTTAAACTTTGACTTCAACTTT
TTTCCTTCCAGGATCCTACTTACCTGAAACCGATGCCGACGGCAATCCGA
TCATTGTACCAACAAGACCACCAGTCTTCAACCCCAGATGTCGTAAGTCA
ACAAGAAGAATTACCCCAAACTCGAACTCAGTGCCTTTTTTATAATTCTG
ATAGCGCTCACGAAAGATTGCAATACGTTTATCAGTAAAAAATCCAAAAA
GTGGTATGCAAGTAGCTCTGGGTACAAATAAAGGATTGGAATTCTAACTC
CCAGCAATTCTAAAATTATGTAATGCAGCAATTTGAAGGTTTTATGTCAA
AACAAGGACTAATGAAATATTTGTTCTACAACATACACCGACTAGACTAA
ACCGAGCACGTGGCTTGCAGTACATTTATAACAGAGACTAGATGACTATT
TTGAAGATTATAAAAAAAATATANTCAACTTTTTTCCTTCCAGGATCCTA
CTTACCTGAAACCGATGCCGACGGCAATCCGATCATTGTACCAACAAAAC
CACCAGTCTTCAACCCCAGATGTCGTAAGTCAACAAGAAGAATTACCCCA
AACTCAAACCCAGTGCCTTTTTTATAATTCTGATAGCGCTCACGAAAGAT
TGCAATACGTTTATCAGTAACAAGTCCAAAAAGTGGTGCAAGTAGCTCTG
GCGGGTATAAAGGATTGGAATTCTAACTCCCAGCAATTCTAAAATTATGT
AATGCAGCAATTTGAAGGTTTTATGTCAAAACAAGGACTAATGAAATATT
TGTTCTACAACATACACCGACTAGACGTGATCGAACACGTGGCGTGCAGT
ACATTTATAAGAGAGACTAGATTACTATTTTGAAGATTATATAAATAAAA
TTTCTTTCCTTTTTCAGCAAGACGTGCCAGAAATGTTTGCAAAGGAAAAT
TCACCTTGAGAGCATACAAACGTAACAAGAATGATGAAACAGGACGTGAA
TTCATTGAATGCCGTGCGCTCAAATGCTTCCGTTGTCCACGATTCACCCG
ATTCTTGGATGAGTGTCAAACTTGCGTCCACGAACGTGACTTCGACAAAG
AAGAGGTCAAAGAACGTAAGTCGATACCACCATTCAAACCATATTTTCCT
TCTTTAAATGGTCTTGGAAATATACCAATTACTTCTTATCCGTTAAATGG
TGAATTTATTCTCAAAAATTATTTCCAATCTGTTAAATGGAGACTCTTTC
TTTTTTTCTTCAGGATGCCTCAAACGAATGGAAGAGGAAGAAAAGGAACA
AGAAGAAAAAGATCCCATCTGTAAGTAAATTACTCTTGCCCAAACCTCCA
GTAGCGACCATAAGCGACCACATACTCATCGAAAAAAAAACTCTAAACTA
AGGAGGTCACATAATAACTTATAAAAAAGCAATTCTACAAAATCATTTTT
TTCATCAAAGAAAATCATTACCAAAATTTGACGGTGATTCTAATCACAAA
GAGCGAAATAAGTACTCAAACTTCTAAATGCTTTTTTCAAGCAATTCTTA
GGTATGTAGTGAACATTTAGGCTCATTTGATTAAAATGACTCTTCATTCA
AAAACATTTCTTTTATATATCAGGTTACAACGACAGTTGCCCATTCTGCC
CAAAAGACGACATCAGATACCAATACCCAGCTTTCGACAACAGACGTGTT
TACTGTCAATGTCCACATAAAATGGACCCTATCCGAAAAATCTATCCCTT
TCCCGTCTGCAATATCTGCCCGGCTGGAACAGTTTTCAAGCAACCAGAAG
TTGGAAAGTCTGGATGTTGTGTCGCTCCAGGCCATGAAGGACCACATGAG
TAAAAATGAAAAGATTAAAAATCACAAATGCACCTCATGCAAAAAATTGA
TATATGAACAACTTTGTTTTTTATTTCCAAATTAATTTATTATCTACAAT
TTTCAATGTTTGTTAGATTTTATTTATTGCTGACTTAATTACAAGAAACA
TTTGACGTATACTTTTTTCAGATTATACAAAATGAAATTAATGAGCTTTC
TTTCATCCCACGAGTTATTACCCTAAACTAGCCATCCCGGCCTCGTCCGA
GAAGACTCTTCACCGTGATAATTAAGCTCGCTGTTATTGTTGAGAAAATA
AATGTATTTTTACTTAAACGATTTCTTGCATTTTCCAAGGAGAATGAACA
ATAATATTTCCTATATCGAAAGGAACATCCATTAAAACATTTTCCTGTAT
TTTCCAAGAAAAGTTATACAGAAAATATTTCTTAAATTATACTAGTATTT
CTAAGGAAAATTAGATAAAACACATTTCTTGTATTTTCCAAGGAAAAAAT
TACATGAGACAACCTTAATATGTTTCAAGAAAGTTATTGAAGTTAAACAA
TTTTTGCTACTTTCACCAAGTTGATTTTTCAAGAAAATCGCTTTCTTACC
ATAGTATAAGAAAGCCGCGGCTGGAATGATGACGCTATTGTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00070575-exon-scaffold_56-1575043694:937599..938165 | TCONS_00070575-exon-scaffold_56-1575043694:937599..938165 | Clytia hemisphaerica | exon |
TCONS_00070575-exon-scaffold_56-1575043694:937224..937304 | TCONS_00070575-exon-scaffold_56-1575043694:937224..937304 | Clytia hemisphaerica | exon |
TCONS_00070575-exon-scaffold_56-1575043694:936251..936448 | TCONS_00070575-exon-scaffold_56-1575043694:936251..936448 | Clytia hemisphaerica | exon |
TCONS_00070575-exon-scaffold_56-1575043694:936046..936102 | TCONS_00070575-exon-scaffold_56-1575043694:936046..936102 | Clytia hemisphaerica | exon |
TCONS_00070575-exon-scaffold_56-1575043694:934871..935742 | TCONS_00070575-exon-scaffold_56-1575043694:934871..935742 | Clytia hemisphaerica | exon |
TCONS_00070575-exon-scaffold_56-1510915933:937599..938165 | TCONS_00070575-exon-scaffold_56-1510915933:937599..938165 | Clytia hemisphaerica | exon |
TCONS_00070575-exon-scaffold_56-1510915933:937224..937304 | TCONS_00070575-exon-scaffold_56-1510915933:937224..937304 | Clytia hemisphaerica | exon |
TCONS_00070575-exon-scaffold_56-1510915933:936251..936448 | TCONS_00070575-exon-scaffold_56-1510915933:936251..936448 | Clytia hemisphaerica | exon |
TCONS_00070575-exon-scaffold_56-1510915933:936046..936102 | TCONS_00070575-exon-scaffold_56-1510915933:936046..936102 | Clytia hemisphaerica | exon |
TCONS_00070575-exon-scaffold_56-1510915933:934871..935742 | TCONS_00070575-exon-scaffold_56-1510915933:934871..935742 | Clytia hemisphaerica | exon |
TCONS_00070575-exon-scaffold_56-1491911889:937599..938165 | TCONS_00070575-exon-scaffold_56-1491911889:937599..938165 | Clytia hemisphaerica | exon |
TCONS_00070575-exon-scaffold_56-1491911889:937224..937304 | TCONS_00070575-exon-scaffold_56-1491911889:937224..937304 | Clytia hemisphaerica | exon |
TCONS_00070575-exon-scaffold_56-1491911889:936251..936448 | TCONS_00070575-exon-scaffold_56-1491911889:936251..936448 | Clytia hemisphaerica | exon |
TCONS_00070575-exon-scaffold_56-1491911889:936046..936102 | TCONS_00070575-exon-scaffold_56-1491911889:936046..936102 | Clytia hemisphaerica | exon |
TCONS_00070575-exon-scaffold_56-1491911889:934871..935742 | TCONS_00070575-exon-scaffold_56-1491911889:934871..935742 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_56 | supercontig | scaffold_56:934871..938165 - |
Blast
The following BLAST results are available for this feature:
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