TCONS_00070574 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070574
Unique Name	TCONS_00070574
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1916

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_56:882929..890444-

transcript sequence

>TCONS_00070574 ID=TCONS_00070574|Name=TCONS_00070574|organism=Clytia hemisphaerica|type=transcript|length=1916bp
ACACAATGGGAAtcacatgaaaacatgaaaaataagaaaaagatgAGTTT
ATTTTCTAATTGGCAATCATTTTGCAAgatcaattttttagaaaacattt
cTATCTAAAGTTTTAAACAAGGAAAAAGTTAGATCAAGAGATGCGTAAAT
CACTTGCAACACCTCAACAAGGAAATGGCAGAAGATCCATGCTTGGCTTT
GGAAGTGCTGCAGCAAAAGGCCAGAGAAGGGTTGGACTTCCGGAACAAAA
GAAACTTAATTTCAGTGCCAATCGATCAAGAATGCAAAACTCAATGGTTG
GCTCCAAAAGATGGTCAAGCCAAGGATCTCATGCGATGAAAGACCAAAGA
CCATTGAGTAACAGGGCTTTTCAAAAGCAACTGATTGATGATATTCTTGA
GTTTCTTAGCGAAACTGGTTACCCTCATTCAATCACACCCAAAATCTTGA
GTGCACCAACAACCAAAGAATTTGTGAGAGTTTTTGAGCATTTGTATGGT
TGCATTGACAACAATTTCACAATGGCCaacaaaaaagttgaagaggAAGT
CCCAAAAATCCTGAAACTTCTGAGCTATCCTTTTACCATATCGAAAAGTG
CAATGTTTGCGATTGGTAGTTTACATTCATGGCCAACTTTGCTTGGCTCT
CTTCATTGGATGGTTGATCTCATTAAAACATTTAACAGTATGGATATTGA
ACAAGTTTTATTCCAACCATCGTTTCATGATGAAGACCCCACAAGAAAAC
ACGGCAAGaCATTCATTGAATATTATACACTACGATATGGAAAATACATG
CGTAACGAAGATGAAGAGGAAGATATCAAACTTATGAAGAAAGGACTAGA
GACTGCTATTATTGAAGATGCTGGCTGTTCTGCTGAAGATCATGAGATGC
TGAGGGAAGAAGTTGAAGCTCTAGAGCAAGAACTAGCAGCCCTTGAAGCT
GAAAGTgACCCTTTGGAAGAAGCTATCAAAACGAAACAGATTCTTGAAGA
AAAGATTGAACAAGATGAGATAACTATTAAAGAACTTCTTCAAGAGCACG
TTGTCCAGCAAAAGCAGGCATCAAACTACCGAAGACAACTGGAGGAAGAA
GTTGACAGAAAGATTTGATTCCATCAAACACAAAAGTAGTGAAATCAAAC
GTGAACTTGAACGATTGAACAATGAATCAGACAGACTGGAGCAGCAAAAT
AATGAAAGAGAGATCAGATATTGTCGAAAATATGATGAGATCAATTCATT
AATCAATCAATATAATGATATTGTGAAAGAGCTGGTACAAAATTCCGAAA
TTAAACAGTACATAGGCAATGAATCACTTATTCTTGTCTTTGACCACAAC
GTTCAAGATATTAGTAACACAAGATATCGACTGAAGtcttTACTTACAAA
ACTAGCGGAGCAACTTTCTGAAGATGTTAGACAATTAGAATCAGAAATCA
CCAACAAAGAAATCGAGATAACTAAAatgaaAGAAGCAGTAGCTGACAAA
AAAGAAGAGATACCTCGTTTGAGCAACAACATTGATAGATTGGATAGATT
GTTGGATGATAAAACATCAAAATTAAAACACAATACAGGAACGTTTGGTT
CCATACAACAACAAGAATTTGCACTTGAAAATCAACTACAAACTATTTAT
CAATCTGTGCAAAACGAAATACATTGTTTGGAAGAAAAGCGGTTAAGAGT
TGAAGAAGATgggaagaaattgaaaattgaagaagatgATTTTCTCCAAC
ATATTTTAACATATgccaaaaattttcaacaataCAAATTAAATGTTAAG
aaaggAATTGAAAACCTTAACAAAAACCTGCAATCAGACATTCAGCATAT
CGACCAAATCCAAAAATCATACACAGAGTCTGAAGAATAATTATGAtgaa
ttttttgtatttatag

Run BLAST on NCBI

transcript from alignment at scaffold_56:882929..890444-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070574 ID=TCONS_00070574|Name=TCONS_00070574|organism=Clytia hemisphaerica|type=transcript|length=7516bp|location=Sequence derived from alignment at scaffold_56:882929..890444- (Clytia hemisphaerica)
ACACAATGGGAATCACATGAAAACATGAAAAATAAGAAAAAGATGAGTTT
ATTTTCTAATTGGCAATCATTTTGCAAGATCAATTTTTTAGAAAACATTT
CTATCTAAAGTTTTAAACAAGGAAAAAGTTAGATCAAGAGATGCGTAAAT
CACTTGCAACACCTCAACAAGGAAATGGCAGAAGATCCATGCTTGGCTTT
GGAAGTGCTGCAGCAAAAGGCCAGAGAAGGGTTGGACTTCCGGAACAAAA
GAAACTTAATTTCAGTGCCAATCGATCAAGAATGCAAAACTCAATGGTTG
GCTCCAAAAGGTAAAAAGTTTTGTGTTTTATATTTGAAATTATTTTATTA
GTTACTATTTTGAAGATTTTGAGGTGTGAATTTCACCTGGTACTAGGTTG
AATAACACAGCATAATTCTCATTGCACATTGTTTTATTTATATATTTTTT
TAATTTCTCGTTAATATTAGATGGTCAAGCCAAGGATCTCATGCGATGAA
AGACCAAAGACCATTGAGTAACAGGGGTCAGTATAAGAACAATATAAAAG
CTGTACCTCGAAACCTTGTGAGATGTGATGACATGCTAATTCAAATTGCA
AACTCTTAGAAACAATATTTAAGTCAATTATTGTCATGAATATAAATACA
ATTTTCTACATTACAGCTTTTCAAAAGCAACTGATTGATGATATTCTTGA
GGTAAGTGTTTTAGTAATAAAGAAACTGTTTTTATAAACCAAGTACGATA
CAATAAATATGGCTAAAATTTCACTTAGTTATTGCCATATTTTGGCCTTT
TTTCTATGATAAAACTAAACATCAAAATTTTGTCAACAAGTTAATAAAGT
AATTCCATGGAAACTGTCAACTCATGTTGAGTTTAACTATCCTGTTTTTT
GAAATAATCACACCCTGTCGGACACTTGGATATTTCTGGTTATTTTATAG
TTTCTTAGCGAAACTGGTTACCCTCATTCAATCACACCCAAAATCTTGAG
TGCACCAACAACCAAAGAATTTGTGAGAGTTTTTGAGGTTTGTAAATTTC
AGATCCTACCCTTAATTATTGTACAATTTTTACTTTTCATTATTACAATA
TATTCTTATAAGACAGATGTATGTTTTCCAAAAAATTTCATTAATTTCAG
GCACTGTCTATTTTTGTCATTTAGCATTTGTATGGTTGCATTGACAACAA
TTTCACAATGGCCAACAAAAAAGTTGAAGAGGAAGTCCCAAAAATCCTGA
AACTTCTGAGCTATCCTTTTACCATATCGAAAAGTGCAATGTTTGCGATT
GGTAGTTTACATTCATGGCCAACTTTGCTTGGCTCTCTTCATTGGATGGT
TGATCTCATTAAAGTAGGTTTTATTATATAAGAAATTCAAATTGAATAGT
CCAAAATATATATATATATATTTTAATATTGACTTATTCTCAATTGTTTA
ACAGACATTTAACAGTATGGATATTGAACAAGTTTTATTCCAACCATCGT
TTCATGATGAAGACCCCACAAGAAAACACGGCAAGGTAGAAATTAATTAA
CATAACATAATATTTAGAAGAATACTGACCTTATGAAAACATTATAGTGA
ACAAAACGAAAAAGGGTTGATTTGATTTAACAAAGAATTTCTTCTACTTA
CAATTATATCAATTATTTGGGAACATGTAAGAAATGTTAATTCGGAATTA
CGTAAATGTAAATGGGTCTGCAATTTTGATTGAGCAGATATTGTATTATA
CATTGGATTAGCCAGATAAAACATTATCATGAATGTGAGTTCAAATCTAA
TTCAAATTACATATAATTTCATTTTTCTAGACATTCATTGAATATTATAC
ACTACGATATGGAAAATACATGCGTAACGAAGATGAAGAGGAAGATATCA
AACTTATGAAGAAAGGACTAGAGACTGCTATTAGTATGTCATTTGATAAA
GACACTCGCAAACAAGTCTGATAAGTAATAGTTATCACACGGTACCGAGT
ATAGCAGGATATATTTTTTAAGTTCAGATTTTTCGTCATATTTTCCGAGC
TTTAAGTAAGGACAATAAGAGAATGATATTAGTTGTTCATCATCTTCACT
TTAGCCTTACTTAGCTATTCTAATTCAAAATTTAAATCTTATTATAGGAA
TGAGAATAATTTTTGTTGATTAAATACAATGTTTTCTTATTTTAGTTGAA
GATGCTGGCTGTTCTGCTGAAGGTAACTCTTAAGATTCGAAAAAGAAAAG
TTAAAGTTGAGGAATGAAAAAAGTGCCTACAACAACATATTTGCTGAACT
TCGTCTATGTAACTAAGAAGAATTTAGATCTTATTTAGAACGTATCCTAT
CTTTCACCCCTATCTCATATTACGTTTTAAAAAACGCTAGAAAATCCATT
CACCAAAAAAAATGTACAGAACTATCATCAACTATCAATATCTCGAGAGA
AGTGAAGAAAAAAACTTTTAACTCTTTACCAAAAAAATGGTAAAGAATCA
CAAGAAATAATTTATTTTTCAAGAATTCATATGTCTTTATTTTCTTTAAA
AGAGGGCAGTGACACTTGTAAATTTTAATCATGAAGACTTGATTAAAAAA
TTTCAGAAATTTTGAAATGAATTAATGTAATGTAACCATGCCTTTACATT
GATAAAATAAAAAGAAATTCTGAAAGTCCAACCTGATAAATATTTTTATT
TTTTATTTTTTTGCATTCTAAATGATTTTCTTTGTGTCTTGCTTAGATCA
TGAGATGCTGAGGGAAGAAGTTGAAGCTCTAGAGCAAGAACTAGCAGCCC
TTGAAGCTGAAAGTGTAAGATTTATCAATAATATTCTGTTTGAATTCAAT
ATACAGAATACTTAAATTCTTTCAGGGCAGATCTTGGGAGGATGAGATTG
AAATCAATAACAGAATTTCGAGATTATTCTGAATTACTAAGAAAATACTG
ATTTCAATTCCTTTGTTTAGCATAAAAAACGAAACAAACAGCCAAGATAA
ATATCACAACACTAACAGAAATGGTTTTGAATTATATACATAATTTTAAT
AATTTTAGGACCCTTTGGAAGAAGCTATCAAAACGAAACAGATTCTTGAA
GAAAAGATGTAATTGTTATTAGTTGTTTTCTTGTTACAGTGCAAAAGTAG
GGTTCATTTTTAATTGTAGAAAAGCTTATAAGAAATTAAATTTACAGCTT
GGTTTGCTCTTGCCTGAGAAATATTTTTTTCTCGAACAAAACTTTTCAAA
AAGCTTTTTCTAAATTAAACATAATGTTTTTGATTTAGTGAACAAGATGA
GATAACTATTAAAGAACTTCTTCAAGAGCACGTTGTCCAGCAAAAGCAGG
CATCAAACTACCGAAGACAACTGGAGGAAGAAGGTGTACTTGCTTGAATT
TTTGAATTTGCTACACTCTTTTCCCATTCAAATTTTTTGAGTCGACATTT
CCTCACCCAGAAACTTTCTTGAAATTTCAATAAAAGTTTAAAGCTGTTAC
CTTCTTTCCCTTTTAGATATTGACTATGAGCAGGTATGAATCCTTTTCAT
CAGAATTTTTTTTCTCTGTTTCAACATCTACCTTATTGGTATTATATTTT
GAGGAAACGTTTTTCGCGTGTGCTTAATTTTGCGATTGCCACTTTCTGGA
AATTTTCGTGTGTATTAGATTTCGCGATTCATTAAATTGGGCATTTTCAA
AAAGTGGGAATAAAGAAAGAAAATGACTGATTTCGCTTGAAACACAACTT
ATTGGGTGTAAACATACCAAAAATAGTAACAAAACTAGTGACAAAAATAG
TAACTAAGTGTAACAAATAAGTATTTTTGATTTGCGACCTATTTTGAAAA
TTTTTCGCGTTTATTTAATTTCACGATTTTGTATTTTTGAAAAATTTAAA
CAGTATTAAATTTCACGAAATTTGTCCTAAAAAATCGCGAAATTAAGTAC
CCGCGAAATTTTGTAACACGCAAAATATAATACCAATAAGGTATAAGTCA
ATTATTTTGAATGGCTGATTTCATAAGGCAAAAATAAAAAAATGTAGTGT
TTCCGTAAACCGGCCGGGTGAAAAAGAAATTTTTTCTGACCCGTCCGCAG
ACTATGGGTTCATCTATATGGTTCATCATAAAGAAAATCAAGTTGACTGT
TCAAGCTATCAAAGGTCGTTTATTTAGATATTCCCGCTTGTAAATCAAGT
TTTGTTCGTTAGTTTGTTGATACATTAGTATTCATAGGCCTTACTTCATA
CTGTTTGCACATACAAGTTATCTTTAAAGTTTCAATGATCTTAAGTTATC
AAAAATAGCAAAAAAATGCGGCCGGCCGCATGAGAGCTTTTTTCCTTCAC
CCGAATTCTGGAAACACTACATTTTTTTATTTTCGCCTAAGTTAAAAATA
AATGACTGAGTGTAGTCCTGACAAAATGTTGGTTTTTTGACCAACTTGGT
CTCAGCGAGTCGTCCATAAAATCATTATTTTTCATTGATCTATAAAGTTG
TCATCCTTAAAAGAAACTATTTCAATTTTATGACCAGGTTTTTTGAAGAA
TTTGTTTCATTTTCTAAGTAGGTAAGATTGAGATTTTTTCTGCTCCCTGT
ACGTTTTGAGAAGGTGATAACCAACCAATTTTTTTAAAGCCACTAATTTC
TCATGTTATTTTTTGAAGTTGACAGAAAGATTTGATTCCATCAAACACAA
AAGTAGTGAAATCAAACGTGAACTTGAACGATTGAACAATGAATCAGACA
GACTGGAGCAGCAAAATAATGAAAGAGAGATCAGATATTGTCGAAAATAT
GATGAGGTAATATAAAATAATGCAAAATTGCAGGTCTCTATTTCCTTTGT
TTATGACAGATTCCTAGCTAAAGTACCTGCTTAGATCAATCCTTTTCTAA
AAATAAGATTTACACAATTGTTGTGGAATAACTGATGGGATTAATTTTCG
CGAAATCTTTTTAAGATTTTGTGGGGACTAAAATTTAGGGACAGCTCTAT
TGTGAGGTAATATTTTCACGATTTTGTGCTATTTTTGCTATTTTACTGCC
ATACTATGCATGATCTGACATTTTTTGTAATTTAATTCAAAAGAAATTGC
AGATAAGACCTTTTCAAATTTCTATTGGGACTTTCGCGGATGACAACCAA
ATCGGCGAAATCTGCCAAATTTAATTCCCGCAAAAATTAATTCCATTAAA
GTAGTACTATTAGCTTATTGTTAGTAGTGTTATTAGCTTATACCAAGTTG
GCATTGTCATTATCTCTTTTTTCCATAGATCAATTCATTAATCAATCAAT
ATAATGATATTGTGAAAGAGCTGGTACAAAATTCCGAAATTAAACAGTAC
ATAGGCAATGAATCACTTATTCTTGTCTTTGACCACAACGTTCAAGATAT
TAGTAACACAAGATATCGACTGAAGGTATTCATTACATTACATTCAGTAC
TTTGAGTTTTTGTTTTGAGGATGTCAAATTGATCATGTAAATATACAAAA
CTGGAGAAAATCATGATAGTTGGGGCCAACCCCTAGTCCTTAGGAATTTT
AACACCTTTAGTGTGATTGGTGCGAAAGTAAATAGAATTTTGAGACTCTT
TGAGGGGGGTGGGGGTGGAAACCTGGTAAAGTTTTGATGTCATTATAGGC
AAAACTTCCAAAATCCAAATAGGTTAAAAGTGGGCGATTTTTCAAAGTTA
TACGAAATTGATACCATTGGATAGAGTATGAAATTCTGTTCAAAAAGTAT
ACTTAATAAAAAATTCTTAGCCCCCTACTAAGATGTTATTTCACTGGATC
GCATAAACTTGCTCGATAAAGAACTTCTCTTCCAACCTCAAACAATTTGG
TATTTTGTATTTAATATTGTATCATTATTTGTGTTTTTTTTTCAGTCTTT
ACTTACAAAACTAGCGGAGCAACTTTCTGAAGATGTTAGACAATTAGAAT
CAGAAATCACCAACAAAGAAATCGAGATAACTAAAGTAAGCAAAACGCAT
TATCTGTAATGAACTTTTTCAATCAATTGTCAAGGAAAGTCGAGGAAAAA
CGATATTCAAACAGATTGTTGACAATCAATGTCTTTTCTTTTTTAGATGA
AAGAAGCAGTAGCTGACAAAAAAGAAGAGATACCTCGTTTGAGCAACAAC
ATTGATAGATTGGATAGATTGTTGGATGATAAAACATCAGTAAGTCAACC
TGCCATTTCTGTTGCCATCTTCCTTTTTAATATAAGTGGGTTCAAGGCTG
AGAAAATTCCAGTTTAATTAAGTTACTTTAATATAATAGTATAACATGCT
CTACAGTTTTTCCTATAACTCTCTAAAACAATTATTCTTTGGAACGACCC
AAAAGAATCCCACGCTGGAAATCTTGGTCACAGGTCCTTTAAAAATGGGC
CCATAAAATAATGTTAATTACAGTGTACAAGAAATAAACAAACTGAATTA
TGATAATTCAATTTTGTTTTTTTTCTTGTACACTGTATGAAGCTCTGGTC
CTGATGATCGAACACTCTTTGATGGAATAATCTATATTACTTATTGATAT
AATGCCAATTATGTTTCTAATTATAAATATTGATTAATTTTAATACTAGA
AATTAAAACACAATACAGGAACGTTTGGTTCCATACAACAACAAGAATTT
GCACTTGAAAATCAACTACAAACTATTTATCAATCTGTGCAAAACGAAAT
ACATTGTTTGGAAGAAAAGCGGTTAAGGTTTGTACATCTGTAGTTTGAAA
AACCTTTGAGAAAAGAACAGTTTCAAAAATGAAGGGTGTTTTGTGAAATT
TTCTCTTTTTCAACTTTGAACTTACAGAGAAGGAATTTGTTTTGATGACG
AACAGTTAGTCAATTTGACGCTCTACACTTCCTATGAAATTTTGTAAAAA
AAAAGTGATAGAAAGATAATTTGAAACAGGCACCAAAACATAGAATAATT
TGGTGTTTTACAGTTATGATAATGACTCTTTCAATATAGTATTGACGATG
AGTTGATATGCTGTAACAGTGGATCAAATTTGACACTCAAAAATTATCTT
CATACGGACGTCAAATAATGTTTTCGTTTTAGAGTTGAAGAAGATGGGAA
GAAATTGAAAATTGAAGAAGATGATTTTCTCCAACATATTTTAACATATG
CCAAAAATTTTCAACAATACAAATTAAATGTTAAGGTATGGAGCACTTTC
TATTGTTATTGTTTTCTGTAAAGAAAAGGCATTTTACCAAAATCTTGAAG
ATTCTCTACTAATTTATGAAAATTTACCCTTAATGGTTATTGGAATTAAA
ATATGACTGAATTGGAGTTATATGTCACCTCACTACGTGCTCTTTCAGAG
AGCTCTTGTGAAATCTGACCAGGCAATATTCTGTTTGTTTTTATTTTCAG
AAAGGAATTGAAAACCTTAACAAAAACCTGCAATCAGACATTCAGCATAT
CGACCAAATCCAAAAATCATACACAGAGTCTGAAGAATAATTATGATGAA
TTTTTTGTATTTATAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043916	XLOC_043916	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_56	supercontig	scaffold_56:882929..890444 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.540098	0	0	0	0	0.844564	1.07944	0	2.14954	0.434921	0.47974	0	0	0	0	1.32893	0.318278	0.440098	0.709179	0	0	0.651201	1.2199	0	0	0	0	1.60697	0

Blast

[Close]

BLAST of TCONS_00070574 vs. Swiss-Prot (Human)
Match: NDC80 (Kinetochore protein NDC80 homolog OS=Homo sapiens GN=NDC80 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.479e-35
Identity = 84/236 (35.59%), Postives = 127/236 (53.81%), Query Frame = 3

Query:  171 GNGRRSMLGFGSAAAKGQRRVGL--PEQK------KLNFSANRSRMQNSMVGSKRWSSQGSH-----------AMKDQRPLSNRAFQKQLIDDILEFLSETGYPHSITPKILSAPTTKEFVRVFEHLYGCIDNNFTMANKKVEEEVPKILKLLSYPFTISKSAMFAIGSLHSWPTLLGSLHWMVDLIKTFNSMDIEQVLF---QPSFHDEDPTRKHGKTFIEYYTLRYGKYMRNED 812
            G GR SM    S     Q   GL  P+ K      KL+ +   S  + S+ G KR S  GS             +KD RPL+++AF +Q I  + EFL+E GY H+++ K L AP+ K+F+++F  LYG +  ++ + + K EEEVP+I K L YPF +SKS+M+ +G+ H+WP ++ +L W++D IK   +M     LF   QP   + +    H K F++Y    Y  +M   D
Sbjct:   10 GAGRLSMQELRSQDVNKQ---GLYTPQTKEKPTFGKLSINKPTSERKVSLFG-KRTSGHGSRNSQLGIFSSSEKIKDPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGAD 241

The following BLAST results are available for this feature:

BLAST of TCONS_00070574 vs. Swiss-Prot (Human)

BLAST of TCONS_00070574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NDC80	3.479e-35	35.59	Kinetochore protein NDC80 homolog OS=Homo sapiens ...	[more]

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TCONS_00070574 (transcript) - C. hemisphaerica