TCONS_00070569 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070569
Unique NameTCONS_00070569
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length918

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070569 ID=TCONS_00070569|Name=TCONS_00070569|organism=Clytia hemisphaerica|type=transcript|length=918bp
taggtTAACTTTGGATACTTGGAGCATGGAGAAAAGAAGAACGCTTTGGT
GAAACTTCGTTTATGTCCTGATTGCTCTTACAAGCTGAACTATCACAAGA
AACACAAGAAagcgaagaagaagaaatcgaaaaagaagaaaatcaaagaa
cGTCGACGAGAGAAGAAAGAACGAAAGAAatcaagcaaaaagaaaaagaa
gaggaaGAATTCTACGTCATCCATTGAAAGTGAAAGCGATGAGTCAAAAA
TTCGTCGACTTCAAAAGAAAaggatgaagatgaagaagaagatgctTCGA
ATATTTGGAAGAAACCTGTCAAAGAAGATGTCGAAAAAACAAgGGAGGAA
GAATTTGATGAATACTTGGACGATCTCTTTATGTAAAACAAGTTAGAAAA
AAGTTCTTGGACAAGGCTAAATTTATACGCGGATGAAGGCTAATGGAATG
ATATAAATCAATCGTGTAGATACCCAAGCTTCAGGAGGTTTAGTTATGCA
CGAAGCTGTATGTGACGTCCAATTCTCTGGTAAGTCAAGTAAGATGCAAC
AAATATGTGAAAGAACAGTCAAGCCCAAAGACTTAGATTTCTGGGTAAGA
GAAACCCTAATACTGAAGTAAATTGTACTGCAAATTCTTTACTGTAACTG
CCCAAAGTTACTAAGTGAAAGACGAAGACACCTTTTACGATGATTGGGAG
ATGACTTGATGAATGATTGAAAGTTTGCCCGACTTATCTAAAATCCAGGT
GGTCGTATGAATTGAACGGCTATATAAATACTTGTCAACactaaaaatct
taaaaaagaatACTTGTTTTagtaataaaactttttttgtaaTAGTTGGT
TAATGTAATATTTCAATTCGATGATTTTAAACCAAAAACTTATTATTGGA
GATGATATCTTATGCTAT
Run BLAST on NCBI

transcript from alignment at scaffold_56:872622..878108-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070569 ID=TCONS_00070569|Name=TCONS_00070569|organism=Clytia hemisphaerica|type=transcript|length=5487bp|location=Sequence derived from alignment at scaffold_56:872622..878108- (Clytia hemisphaerica)
TAGGTTAACTTTGGATACTTGGAGCATGGAGAAAAGAAGAACGCTTTGGT
GAAACTTCGTGAGTGACCGACGGTAGAATTTTCTTATAGTTGGAGTTCAT
TCTTTTATATTTGATTTACATTCTCACTAAGTTATTTGATATTCTTTTTA
CTTAGGTTTATGTCCTGATTGCTCTTACAAGCTGAACTATCACAAGAAGT
AAGTCATTTTGAATTTTTTCCCCTTATATACTATTATGGGTAAGTAAATA
TAGGTTACGTATTTTTTAATAAATCTTAAGTCGATTGTCAACTTGATAAG
CCAGAGTCCGACCAAAATCACGTGAAAGGTTTAAAGTTTACGGTGGCCGT
GAGAGGACAGCGCGTTTTTTTTTCAATAGCGCGTTTTTTTTTCAACAGCG
CGTTTTTCTTTCCCATGTTTTTTTGCTCTCATTATTTAGGTTTTGAGTGC
AGCATAAAGTAGGAAGGCTTTAAACATACAAAATGGTTTATTGTACTGAA
TGTGGACGGGTGTTAGATGACGATGGGGCAGTATTTTGTTCTCATTGTGG
AAGCAAAACCTATTGTCGTCAGAGGAGATTAAGGCAAGACGTAACTGATG
AACGTGAAATAATCGAGCATTATTTTAAAGAGGGCTTGTTGAAATATAAG
CAAATCGTCCCCATGTTGAGGATTTACCATGGTATTGATATGAGTGAAAG
GACGCATTGAAACGTCGTTTAAAGACTTATAATCTATCACGAAGTTTTAC
AGATATCACAATACCTGCTTTATCTGCTTTAATTTTACGTGAAATGGAAG
GACCTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGTGGTTCGTCTTTTCGAGATTTTTACAAAATCAACTTGATGATGTA
AAACATGAATGGAACTCTCATTATATAAGAAAGTCACGACATGATACCAT
AGGAGGCATTCCGGATGTACTATTTTACGCTCCAGAGTCAGTCGATTTCG
AAGACCGAAAAGTAAACCTAGACGATAATTTGATAGCTAACCTTTTAAAC
GAAAGAAACATTCCCCAAGAAGCGACCTTAGCGGTTGAGGCTAACACAGG
TGAAGAGTTAAATGACTTTTTTCAATATGTTATAGAATCAGAAAAATTTT
ATATTTGCACCAAACAACTGGGCAGCGGCAAGAGAGTTATTTTTGCAAAT
TATCAACAGATGTGTCTGATGACCTTTGAAATAAGTTTTATCTATGATAC
ACAAGATTTATTATTTCTTTATTAAGTTTAAATATATCATAAATTTTCGA
ACTGAGTTACATGAACAGCTAGTGAAATTCGAAACCCCCGAAACTCCCGT
CTTCGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCTGTTGAAAAAAAAACGCGCTATTGAAAAAAAA
ACGCGCTGTTGAAAAAAAAACGCGCTGTTGAAAAAAAAAACGCGCTGTTG
AAAAAAAAAACGCGCTGTTGAAAAAAAAACGCGCTGTTGAAAAAAAAAGC
GCTGTCCTCTCTCGGCCACCGTAAAAGTTTAATCCTGAAATGCTCTTTTT
TCATTAAGACACAAGAAAGCGAAGAAGAAGAAATCGAAAAAGAAGAAAAT
CAAAGAACGTCGACGAGAGAAGAAAGAACGAAAGAAATCAAGCAAAAAGA
AAAAGAAGAGGAAGAATTCTACGTCATCCATTGAAAGTGAAAGCGATGAG
TCAGCAAGTTCTGGTGACGAAGAACAACCTAGTGAGTGGAAAACCTTAAT
GATAATGTTTTAATTTGTAATGTTGAACAGGCTGGTTCCTTAAGAAGTTC
AGCAGAAAAAAGTTACCCTCGTGTAGACCAGATGTTGTGCGTCTATATCC
CCTACTATAACCAATTCATTCACTTAAATCTCTGTTATCAGAGTCAAATT
ATTATAAGATATGTCTTCTCTTCGTTTACTGCCACTTTTGTATGAACAAA
TAATATTTGCAATTTTTCAACTGTAACTGGATTGTATTGTAATGCCTTTG
CAAATGTAAAGGAGCTCCCTGAAGCTCTTGGGCGGTATTTTGTCTTATTG
CACAAACACTTTTCAAAAGCAATGCGAAAAAAAAAAAGTTACAAATAGCG
TTCCCTTTTGCAGAAAATTCGTCGACTTCAAAAGAAAAGGATGAAGATGA
AGAAGAAGATGCTTCGAATATTTGGAAGAAACCTGTCAAAGAAGATGTCG
AAAAAACAAGGTCAAATTTCATTTTTACAACCTTATTTTACTGTTATTGA
CAAATTTGACCCAGGAGCATAGTCAGAGGGCTTGTGTAGGGAAATTCTAT
AAGATTTAGTAAAATATTTTTCGTATTTTCATTATATAAAGATGGTAAAT
AATATTGTCTTCTCTCTGCTATACCTGACAATCTCTATAACTAACTGGAA
GGAATTGATTTCAAAATCCGCCCTCTAAATCACTCTTCTATGTTGCCCCT
TTGTATTGTGACAATACTATTTTGGTACCTTATCAACTTAGTAGTGAATG
ATACATTTACTAAAGCTCTTGGAAAGTACATTATCATTAATAGTGACCGT
AGTGAAAAAGTAGAGCATTCGGTTACGGTGTGCAAATTTGTGGGCTCAAT
CCCAAGACGGATCATACCAAAAGACTTCGTACAAAATTGTACTTAGTGCT
TCTCTGCTTGGTGCTCAGCAAGTAAGACAAGGATCAAGGATAAGTGGAGT
AATAGAGGGACATAGCATGGCGCCCTCCCTTGCCTTCGGGTTTAATAGCT
ATCGAAAGAGGAGCTTTTGGGTCGCCTCTGACTGCGGTCGCAAGATTTAC
TGTACTTATTTTGAACATATTGTAACCAAATCTTNGGTCGCCTCCGACTG
CGGTCGCAAGATTTACTGTACTTATTTTGAAGATACTGTAACCAAATCTA
TTTCTCTCATAGGGAGGAAGAATTTGATGAATACTTGGACGATCTCTTTA
TGTAAAACAAGTTAGAAAAAAGTTCTTGGACAAGGCTAAATTTATACGCG
GATGAAGGCTAATGGAATGATATAAATCAATCGTGTAGATACCCAAGCTT
CAGGAGGTTTAGTTATGCACGAAGCTGTATGTGACGTCCAATTCTCTGGT
AAGTCAAGTAAGATGCAACAAATATGTGAAAGAACAGTCAAGCCCAAAGA
CTTAGATTTCTGGGTAAGAGAAACCCTAATACTGAAGTAAATTGTACTGC
AAATTCTTTACTGTAACTGCCCAAAGTTACTAAGTGAAAGACGAAGACAC
CTTTTACGATGATTGGGAGATGACTTGATGAATGATTGAAAGTTTGCCCG
ACTTATCTAAAATCCAGGTGGTCGTATGAATTGAACGGCTATATAAATAC
TTGTCAACACTAAAAATCTTAAAAAAGAATACTTGTTTTAGTAATAAAAC
TTTTTTTGTAATAGTTGGTTAATGTAATATTTCAATTCGATGATTTTAAA
CCAAAAACTTATTATTGGAGATGATATCTTATGCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043914XLOC_043914Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070569-exon-scaffold_56-1575043694:878051..878108TCONS_00070569-exon-scaffold_56-1575043694:878051..878108Clytia hemisphaericaexon
TCONS_00070569-exon-scaffold_56-1575043694:877911..877953TCONS_00070569-exon-scaffold_56-1575043694:877911..877953Clytia hemisphaericaexon
TCONS_00070569-exon-scaffold_56-1575043694:874406..874550TCONS_00070569-exon-scaffold_56-1575043694:874406..874550Clytia hemisphaericaexon
TCONS_00070569-exon-scaffold_56-1575043694:873899..873995TCONS_00070569-exon-scaffold_56-1575043694:873899..873995Clytia hemisphaericaexon
TCONS_00070569-exon-scaffold_56-1575043694:872622..873196TCONS_00070569-exon-scaffold_56-1575043694:872622..873196Clytia hemisphaericaexon
TCONS_00070569-exon-scaffold_56-1510915933:878051..878108TCONS_00070569-exon-scaffold_56-1510915933:878051..878108Clytia hemisphaericaexon
TCONS_00070569-exon-scaffold_56-1510915933:877911..877953TCONS_00070569-exon-scaffold_56-1510915933:877911..877953Clytia hemisphaericaexon
TCONS_00070569-exon-scaffold_56-1510915933:874406..874550TCONS_00070569-exon-scaffold_56-1510915933:874406..874550Clytia hemisphaericaexon
TCONS_00070569-exon-scaffold_56-1510915933:873899..873995TCONS_00070569-exon-scaffold_56-1510915933:873899..873995Clytia hemisphaericaexon
TCONS_00070569-exon-scaffold_56-1510915933:872622..873196TCONS_00070569-exon-scaffold_56-1510915933:872622..873196Clytia hemisphaericaexon
TCONS_00070569-exon-scaffold_56-1491911889:878051..878108TCONS_00070569-exon-scaffold_56-1491911889:878051..878108Clytia hemisphaericaexon
TCONS_00070569-exon-scaffold_56-1491911889:877911..877953TCONS_00070569-exon-scaffold_56-1491911889:877911..877953Clytia hemisphaericaexon
TCONS_00070569-exon-scaffold_56-1491911889:874406..874550TCONS_00070569-exon-scaffold_56-1491911889:874406..874550Clytia hemisphaericaexon
TCONS_00070569-exon-scaffold_56-1491911889:873899..873995TCONS_00070569-exon-scaffold_56-1491911889:873899..873995Clytia hemisphaericaexon
TCONS_00070569-exon-scaffold_56-1491911889:872622..873196TCONS_00070569-exon-scaffold_56-1491911889:872622..873196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:872622..878108 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.04815	1.07148	1.7518	0	0	0	0	0	3.55315	1.82725e-07	0.809638	0	0.560196	0	0.488816	0	4.23383	5.22678	1.84609	0	5.49727	5.00696	2.96272	8.9871	0	0	7.58794	5.26718	1.80058	4.66943
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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