TCONS_00070567 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070567
Unique NameTCONS_00070567
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1914

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070567 ID=TCONS_00070567|Name=TCONS_00070567|organism=Clytia hemisphaerica|type=transcript|length=1914bp
GTTTTCAACCGTCacacaaaattattttgaattaattaATGTGATGTTGA
CATTGGATTTGTAATTTTGACTTTTCTTGATGTGAACATTTTTGATGTGT
TTATGATGCTCAGAAGAAGCCAGACGTCTTACTTCTgctgttcaattttc
tttgtggTGGCACTCGTCAATTGTGatttttttaacGTCAATCTCAATGT
GGCTTCAGGATCCACGGTCTATCTGTCTTGCAAGGACCTTATCACCGATA
ACATCACACAATATCACTTCCAGTGGCTTAAAGATGGTATTGATGTTAGA
GAGAAAAATTTTAGattCTTTTACCAAAGCCTGACGCTTGTGAATACTTT
AACTTTCAAAGACATCAGGTTTGATGACGCAGGCTTATACGAATGCATCG
TTACCAATTTAGTTGGAAATCAGACAAATTTGCAGAGGGTTTTTGAGATC
AACGTCCAAGaaAAAGATGAAAAGTTGAGATTTTCGCATGCATTGAACGG
TTCGAGTTTGGTCATACAAAGAGAACTTGGTCAAAGTGTATCGTTCAATT
GTCACGTGGCTGGAGCTGCTGATCTGGCAAGACACTACCAATGGAGTTAC
CTCGACACCAATAAGACTTTAGACAACATAACATTATTGAAGAGAGGCTC
AGAGATGAATGTATTATCACTAAATGACTTGGAAATTGATCAAGGTGGAA
CTTATTCTTGTGTTGTTTCAAATCTCAATGGCTTCATTCGAAGGGAATAC
ACTCTACAAATTATAGATGGAAGTGAATCACGGAGAAAGGCGAAGGAAGA
GCGTAAACGTAAACACCGAAATGAAATCATCATCATATGTTTGTCATGTG
TGGCTGCTCTTTCCCTCATTACAATCGTCGCTATCTTTCTCTCCAAATGC
TTCaaatctcattggtggaaatggAAAACTCGAAGAAATCGCGCCCACTC
TTATCATTACCACGCTTCTACCTCTGAACCGCCCCAAACGCCTAATGGAA
ATGTCTTCAAGCAAATCACGCCCTGGTGATGATACGTTTATCCAATCAAA
AATGGAATAGGAGAACAACACTTGCGTTATTCTTTAGGAGAAATTGGGTC
ATTTTAGAGATCTTTCTGGATAGATCTAGTGAAAAAGAACCGAAAAAAGA
ACCGGCCGGTTTTTAAACAACTGTACCACTGTACACTTATACGGGTGAAC
TTATTGGCTTGTGAAGAGCGAGAAATTTGTGACAGAAGTTATTGCAAAAT
ATTGCTGCTTATTTGATTTGACAGGAGTGAAAAATGAGACTCCTATTTAG
AAATGGCTCTAAactaaaaatttacaaatttaaattttatgcTATTGTAT
GACAATaagatattttattttaagtttaaaaaatattcaagtcgaACATT
AGTTCTTGTAAAAGCAGGAGAATAATTACCAAGCAATTTTATCGCGAAAT
TCAGCTATCAAACTCTATACCatgtagaaaatattttttcaagaaaatga
tttttgaaaagctgaaaGTCTTTATCTATATATATACGATATCTACGAGT
CTTCATTTTACCAAAGTCTGGTAAGAACAgtgttcttttgaaattttctc
ttcGAATGCTCTTCTCCACTTGGTATGTAGGTTTTATGTTCGAAAGACAT
ATTTCTGTTCACCGAAAACGTTATATTTCGCCGAAAAGACAGTCTGATAA
TTATAAATCAAATGTTTCTGCTCTTCTTCTTTGCTttcaaatttattaaa
attcttCTTCGCTTCATTAACGAAGAAATTAGCCATGTGTTGCGCCAATA
GGACTGCATTCGAAGTGTGAGGTATATTAGGTCCCAGACCCTCTGCGTTG
TCGAATTCAAAACTGTTCATTTCTGGATGCCATTGAACGGCGTAGATTGG
AAAATCATTCGCTG
Run BLAST on NCBI

transcript from alignment at scaffold_56:866423..872042-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070567 ID=TCONS_00070567|Name=TCONS_00070567|organism=Clytia hemisphaerica|type=transcript|length=5620bp|location=Sequence derived from alignment at scaffold_56:866423..872042- (Clytia hemisphaerica)
GTTTTCAACCGTCACACAAAATTATTTTGAATTAATTAATGTGATGTTGA
CATTGGATTTGTAATTTTGACTTTTCTTGATGTGAACATTTTTGATGTGT
TTATGATGCTCAGAAGAAGCCAGACGTCTTACTTCTGCTGTTCAATTTTC
TTTGTGGTGGCACTCGTCAATTGTGGCAGTTATAGTAAGTTTTCTGTTTT
CTTTGTTATTTTTACATTATTTCGCAAATTTGAAAATGGGCTTTTCCAGA
AAAAAATTGAATATGGGGGGTGGAGGATATAACAATTTTCAGTGATTTAC
CCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCGGACAATATATCCT
CCACCCTCATGTACGGACATTTTCTGGAAGAAGATTATTGTATTTGATTG
AACGATAAAATATTGGTAATTCTTTTAATTTATTTCAGATTTTTTTAACG
TCAATCTCAATGTGGCTTCAGGATCCACGGTCTATCTGTCTTGCAAGGAC
CTTATCACCGATAACATCACACAATATCACTTCCAGTGGCTTAAAGATGG
TATTGATGTTAGAGAGAAAAATTTTAGGTAACAATTTCTCTTGAGATTAA
CTGCAGCATGCAGTACAACAAGGACTTCAAACAGAAATCAATGGAAAAAT
ATAAATTTGAATTGTCAGGGGGCTATTAAAATTTATTGTATGGGTAGACT
CAGGCTGGGGAAAGCCTTAAATTTTAGATCAAAGTTTTAAAAACCCTTTT
TACGAAGTGATTTGTTTCTACTCTCTATTCTGTATTTGTTTGTTTTCAGA
TTCTTTTACCAAAGCCTGACGCTTGTGAATACTTTAACTTTCAAAGACAT
CAGGTTTGATGACGCAGGCTTATACGAATGCATCGTTACCAATTTAGTTG
GAAATCAGACAAATTTGCAGAGGGTTTTTGAGATCAACGTCCAAGGTATT
GTTATTTACCTCAAATTACCTTTTTTGAGGTAAAAAATACTCTAATAGTC
TACAACTGAAATTAAATTTCAACCAGGGAGGGGGGAGTCATGCAGTTACT
ACAAGATATCATGAGTAGTAAGTGTCTTTTTGATGCTAACAATCTCATAC
CACCACCCTTTACCTCTAGGTAGTAACTGTTTTCTTGACAAAAAAATGAA
TAACCACCCCAAAATTTCCCCATTTTAAAGTTACTTTCTGGAATCTGGCA
GAACAGTGTAGTGCAGGGGCTTATGTATTCTCGTGTGCACAGGTTTGTTA
CAAGCAAACTAACTTTTGATCTGATGCCCTGACCCCTCAAGGACCAAGAA
AATTTTGGGTTAAAGAATTCTAACACCCCTGCTGCCACTGGTTGCCATGG
AAAATGATGTCATTGGTTACCATAGCAACAAAAAATTAAAGTCGTCAAAT
TCAAAAAAAATTTTGTTCCATTCGAAAGAGCATGAAAAACTGGTAAAGAA
AAAGGTCACAACCTATATCTGGAAATGCATATATCTCAAGATATTAAGGA
AATAAGGCATAACGACGTCATAAATGATGACGTCATCGAAAAATAAAAAA
TTGTCAAAATTCAAAAAAAATTTGGCTCATTCGAGAGAAAAACTTCCAGG
GAACAAAAAATATTACTACGAAAAAGTTTCAAAATCATTTAAAGAAAGTA
TATTGATAAAAAATTGATATTTTTTTATTTTTGCCTGTGGAAGGTTGGAG
CTTGGGGCTAGGCACGCTCAGCCCGGCAGATTACAGGCAAAACTTAAAAA
TACCAATAGCCTCTTTTAAAATGATTTTTACCTTTACTTCCTAGTTATCT
TCTTTCATTTTGAGCTTGATTTAAATAGAGCCTAAAACTGCATTCGATTT
TAGTGTTGAAACATTTCGAATGCTTTGAAAATATTTGATTTCAAAATCCA
AAAAGAGAAGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTTTCTTCAGACTTGAATTTGGTACCACCCTCAACTACAGTTACTACCT
TTGGGTAGTAACTGTTTTTCAAATTTTGAAAATTTAGACCACCACGGTAG
TAATTGTGATAGTGTCGGATAGTAACTGCATGACCCCCCCCTCTGTTTCA
ACTGAAATTATGTAAACATGAAAGTACAATCTCAATCCAATTACTAACTT
CAGTTCATTTATTTTCTTTCTAGAAAAAGATGAAAAGTTGAGATTTTCGC
ATGCATTGAACGGTTCGAGTTTGGTCATACAAAGAGAACTTGGTCAAAGT
GTATCGTTCAATTGTCACGTGGCTGGAGCTGCTGGTATTTCTATACTTAT
TTTTTTTTCTTTTGTTGATTTGTTTGTGAACCTTGCAACGAGTTTCCATT
TAAGATTTGTTGCATGGAATATTCCTCCAATGTATGGCTTTATCTAGCCA
TAGGTATTATCAGGCTTGAGAAAGAGAACCCAATTCAAAGTAAAGGTCCC
TTATTTAGCTTTAAACAGCCTGTTTTTAGCCTATATTTACCTTATATTTG
GGTTTTCAGAAGTGAAATTTCCAACCCCCTCGGCAATTAGGTCCCCCCGT
TTATTTGGAACCTAAGAGTACTAACCTAGAAGTACTAAACTAAAAATCTA
TAATGGTGGAAGCCATGTCAGATCTAAGATCGGTGTGCGTCGCAGTTAAC
ATTTTTTCAAGCTCATTCAATCATGTTTTCCTCACTAGATCTGGCAAGAC
ACTACCAATGGAGTTACCTCGACACCAATAAGACTTTAGACAACATAACA
TTATTGAAGAGAGGCTCAGAGATGAATGTATTATCACTAAATGACTTGGA
AATTGATCAAGGTGGAACTTATTCTTGTGTTGTTTCAAATCTCAATGGCT
TCATTCGAAGGGAATACACTCTACAAATTATAGGTAAGATTCACTCACAT
GTTTGAATTAGAGTCTTTCTTTCAGGGATCTTGGTCTCCTCAAAGACGTC
TTTTGAGATGAATTTTTTCTTGGAGCTTGGAAAAAAAAAGACTTTTCACT
GTGCAGAACGGGTTGAACTCATTTGGTCTTGAAAGCTTATATATGTCATT
TCTATAATTACAATTTTCAGAGCTGTTAACGCTGAAAATAATAAGATTGA
TGATTGTCTTTCATAGGGACGGTATGAAACTTTAAGTTCAAAAAACTACA
CGAGTCTCATTCTTAATGTTTTCAACCCATGTTCTTTTAATCTTTTAATT
TAATTTCTCCATTTTCTAACAGATGGAAGTGAATCACGGAGAAAGGCGAA
GGAAGAGCGTAAACGTAAACACCGAAATGAAATCATCATCATATGTTTGT
CATGTGTGGCTGCTCTTTCCCTCATTACAATCGTCGCTATCTTTCTCTCC
AAATGCTTCAAATCTCATTGGTGGAAATGGAAAACTCGAAGAAATCGCGC
CCACTCTTATCATTACCACGCTTCTACCTCTGAACCGCCCCAAACGCCTA
ATGGAAATGTCTTCAAGCAAATCACGCCCTGGTGATGATACGTTTATCCA
ATCAAAAATGGAATAGGAGAACAACACTTGCGTTATTCTTTAGGAGAAAT
TGGGTCATTTTAGAGATCTTTCTGGATAGATCTAGTGAAAAAGAACCGAA
AAAAGAACCGGCCGGTTTTTAAACAACTGTACCACTGTACACTTATACGG
GTGAACTTATTGGCTTGTGAAGAGCGAGAAATTTGTGACAGAAGTTATTG
CAAAATATTGCTGCTTATTTGATTTGACAGGAGTGAAAAATGAGACTCCT
ATTTAGAAATGGCTCTAAACTAAAAATTTACAAATTTAAATTTTATGCTA
TTGTATGACAATAAGATATTTTATTTTAAGTTTAAAAAATATTCAAGTCG
AACATTAGTTCTTGTAAAAGCAGGAGAATAATTACCAAGCAATTTTATCG
CGAAATTCAGCTATCAAACTCTATACCATGTAGAAAATATTTTTTCAAGA
AAATGATTTTTGAAAAGCTGAAAGTCTTTATCTATATATATACGATATCT
ACGAGTCTTCATTTTACCAAAGTCTGGTAAGAACAGTGTTCTTTTGAAAT
TTTCTCTTCGAATGCTCTTCTCCACTTGGTATGTAGGTTTTATGTTCGAA
AGACATATTTCTGTTCACCGAAAACGTTATATTTCGCCGAAAAGACAGTC
TGATAATTATAAATCAAATGTTTCTGCTCTTCTTCTTTGCTTTCAAATTT
ATTAAAATTCTTCTTCGCTTCATTAACGAAGAAATTAGCCATGTGTTGCG
CCAATAGGACTGCATTCGAAGTGTGAGGTATATTAGGTCCCAGACCCTCT
GCGTTGTCGAATTCAAAACTGTTCATTTCTGGATGCCATTGAACGGCGTA
GATTGGAAAATCATTCGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043914XLOC_043914Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070567-exon-scaffold_56-1575043694:871868..872042TCONS_00070567-exon-scaffold_56-1575043694:871868..872042Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1575043694:870766..870904TCONS_00070567-exon-scaffold_56-1575043694:870766..870904Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1575043694:870398..870543TCONS_00070567-exon-scaffold_56-1575043694:870398..870543Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1575043694:868509..868619TCONS_00070567-exon-scaffold_56-1575043694:868509..868619Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1575043694:867910..868104TCONS_00070567-exon-scaffold_56-1575043694:867910..868104Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1575043694:866423..867570TCONS_00070567-exon-scaffold_56-1575043694:866423..867570Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1510915933:871868..872042TCONS_00070567-exon-scaffold_56-1510915933:871868..872042Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1510915933:870766..870904TCONS_00070567-exon-scaffold_56-1510915933:870766..870904Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1510915933:870398..870543TCONS_00070567-exon-scaffold_56-1510915933:870398..870543Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1510915933:868509..868619TCONS_00070567-exon-scaffold_56-1510915933:868509..868619Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1510915933:867910..868104TCONS_00070567-exon-scaffold_56-1510915933:867910..868104Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1510915933:866423..867570TCONS_00070567-exon-scaffold_56-1510915933:866423..867570Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1491911889:871868..872042TCONS_00070567-exon-scaffold_56-1491911889:871868..872042Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1491911889:870766..870904TCONS_00070567-exon-scaffold_56-1491911889:870766..870904Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1491911889:870398..870543TCONS_00070567-exon-scaffold_56-1491911889:870398..870543Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1491911889:868509..868619TCONS_00070567-exon-scaffold_56-1491911889:868509..868619Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1491911889:867910..868104TCONS_00070567-exon-scaffold_56-1491911889:867910..868104Clytia hemisphaericaexon
TCONS_00070567-exon-scaffold_56-1491911889:866423..867570TCONS_00070567-exon-scaffold_56-1491911889:866423..867570Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:866423..872042 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	2.54583e-06	1.87253	5.09756	1.02355	3.27211	0	0.755923	1.86408	1.81996	1.2057	1.26666	0.29038	0.347955	4.28949	6.77182	0.131573	0.181983	0	0	3.32679e-05	1.84379e-08	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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