|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070560 ID=TCONS_00070560|Name=TCONS_00070560|organism=Clytia hemisphaerica|type=transcript|length=5314bpRun BLAST on NCBI protein sequence of TCONS_00070560-protein >TCONS_00070560-protein ID=TCONS_00070560-protein|Name=TCONS_00070560-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1080bp MVDYFDDEFLEKIPSIAPDLMFVEESANQQQTPKKSQPREIEKSTTEKIERun BLAST on NCBI transcript from alignment at scaffold_56:794311..816307- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070560 ID=TCONS_00070560|Name=TCONS_00070560|organism=Clytia hemisphaerica|type=transcript|length=21997bp|location=Sequence derived from alignment at scaffold_56:794311..816307- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_56:794311..816307- >TCONS_00070560 ID=TCONS_00070560|Name=TCONS_00070560|organism=Clytia hemisphaerica|type=CDS|length=45402bp|location=Sequence derived from alignment at scaffold_56:794311..816307- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070560 vs. Swiss-Prot (Human)
Match: KANL3 (KAT8 regulatory NSL complex subunit 3 OS=Homo sapiens GN=KANSL3 PE=1 SV=2) HSP 1 Score: 271.552 bits (693), Expect = 5.889e-75 Identity = 158/469 (33.69%), Postives = 266/469 (56.72%), Query Frame = 2
Query: 515 MFTLTSKDKENLLNFIIDDHSYARPFSLSKDENENIGIATASILKLVPXXXXXXXXXXXXXXXXXXMSVDKPESPLVKYDSSRGRHVMNEVETYLNSLWKDVE-----KNEEEKISRGSWSRDQAKLFDLVYSAINNYQLAKLTHHMHSNEPVLRKLALDKATKRVRKAFATALWNAKLIGWLHGIMIDGLCSSFFLCYLEILQSVKRKVPSLFERVFLHNKATLEKEQTAGLNNLGFRLKKSWEPAVGLHTKVNIEKFPSLPFIINIPSGPSVP-HQSTKRNRFWNYQLLNFGKTVPISAPAYMTKEGYVVKHYLEHCISAVRTNVATFNTRFANRPIVLLGWDVGXXXXXXXXXXXXXXXXICLGFPNETVEGDECPSYWESFGKVRCPVLFFVGTHATSNSLEKVENLRQQMKVHTSLIVMESGDELLRLTNSQKKSLGMSQNMVDKLIQDQLYLFLKENLFKVNG 1903
+F L+ ++E L+ + DHSYA+P+S D + +L + P + + + D++ ++ +P+ YD+ + R VMNE E ++ D + ++ EE ++R W+ Q KLF+ + A+ + +LA+L + NEPVLR++A+DK +RVR+A A+ W+ KLI WLH +++ L YL+ LQ++K K+P+L +R+ + + K AG L LK+ W+PAVG+ + K P P I+ SGPS +++R+RFW QL GK +P++ G V LEH I AVR+ V ++ F ++PI+L+GW+ GALVA V++++ V AV+CLGFP TV+G + ++ PVLF +G ++ E +E+ R++++ SL+V+ D+ LR++ ++KKS G++Q+MVD+ IQD++ FL L + G
Sbjct: 22 LFQLSVHERE--LDLVFLDHSYAKPWSAHPDASS---ARPTRMLFVTPRRQHESTIESDVPIDVETVT----STPMPLYDNQKARSVMNECERHVIFARTDADAPPPPEDWEEHVNRTGWTMAQNKLFNKILKALQSDRLARLANEGACNEPVLRRVAVDKCARRVRQALASVSWDTKLIQWLHTTLVETLSLPMLAAYLDALQTLKGKIPTLIDRMLVSSNT---KTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIASSGPSSSVFPTSRRHRFWQSQLSCLGKVIPVATHLLNNGSGVGVLQCLEHMIGAVRSKVLEIHSHFPHKPIILIGWNTGALVACHVSVMEYVTAVVCLGFPLLTVDGPRG-DVDDPLLDMKTPVLFVIGQNSLQCHPEAMEDFREKIRAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDFLTGVLTRAEG 477 The following BLAST results are available for this feature:
BLAST of TCONS_00070560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.