TCONS_00070558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070558
Unique NameTCONS_00070558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1210

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070558 ID=TCONS_00070558|Name=TCONS_00070558|organism=Clytia hemisphaerica|type=transcript|length=1210bp
ATAGAAGCAaagataatttaaaaaaaacgtaaaaaaacatGTCAACACTA
TCAACCAATGAAGTGGCAGCAAAAAAACCGGCACCCGAACAAACTCCGGC
CCAGACCTCAAACCCGAAGGAACCTAGTACCCAACCCTCCACGTCAAGCG
ATGCAGCTGGTTCAAGTAAGAGTACTGGGGGAGAGGGTAGTGGgaagaaa
aaattgataaaGAGCACTTCTTCGGTGAGCGACCTTCCCATGGCAGGGGC
ATCTATGGACAATGATTCTGCAGTTTCTGAGGAACAAGAAGTGGAACGAC
GAAAGTTACAGATGTTGGTATCTGCGTTCAGCGAAGATCAGTTGAACCGT
TACGAAATGTACCGAAGAGCTTCCTTTCCAAAAGCTGCCATTAAAAGGTT
GATGCAGACGATCACGGGCGGTGCGTCCGTTCCGCCCAATGTTGTCATAG
CAATGGCTGGTATCGCCAAGGTATTTGTCGGGGAGGTCTCAGAAGAAGCT
TTAGACGTAATGGAGAGTTGGGGCGAGACTGGACCCATTGAACCGAAACA
TTTGAGAGAAGCAGCAAGAagattgaaacaaaaacaattgcTTCAAGCCA
CACGATACAAAGGAACTGTCAAATTTTGAGTTCATTATTCGTCTGTTTCT
TTCGAAAAGGATAGAGAAACTTGGCCCCTTGGCGTGGTTATTTCTCTGGT
TGAAGGAAAGGGTGTCTGAAGGAAAAGGGGCATTTCCGATTTGAAGATTA
TGGAAGAAGAATTATGGCCAGGAGATTTCACTTACCCAAATTACTCAACA
GATTAACTTCTTGGAAATCCTGTTGTCAATCAATTTAATTCTTTAAGTTG
AGCGAACGACTTATATCTAACTATTCAATGGTTTGGGACTAGTCGAGAGA
TGAAGTCTTTTGCTCTATTTCATTGAAACATAGAATGAAAATGAAgttaa
aatcaatatttttgatgAGTACTCACAAAGTCATATATTTACATACCTTC
CAACGGTAATACGGATCATCGACACGATGCGACTCAAAGACTTCAATATG
AAGCGCCAAAACTTTAAATACTACAATGGTCTACGGTTACGtgataaaaa
tatacaattttctGGATAAAAGTATTAAATTGATATGATATAATATGGTA
TAAGATGTAGAATATATATGTTATGATCATGAAGTTACtctatgaaatat
tttttaaatc
Run BLAST on NCBI

transcript from alignment at scaffold_56:787292..794047-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070558 ID=TCONS_00070558|Name=TCONS_00070558|organism=Clytia hemisphaerica|type=transcript|length=6756bp|location=Sequence derived from alignment at scaffold_56:787292..794047- (Clytia hemisphaerica)
ATAGAAGCAAAGATAATTTAAAAAAAACGTAAAAAAACATGTCAACACTA TCAACCAATGAAGTGGCAGCAAAAAAACCGGCACCCGAACAAACTCCGGC CCAGACCTCAAACCCGAAGGAACCTAGTACCCAACCCTCCACGTCAAGCG ATGCAGCTGGTTCAAGTAAGAGTACTGGGGGAGAGGGTAGTGGGAAGAAA AAATTGATAAAGAGCACTTCTTCGGTGAGCGACCTTCCCATGGCAGGGGC ATCTATGGACAATGATTCTGCAGTTTCTGAGGAACAAGAAGTGGAACGAC GAAAGTTACAGTAAGGCTTTTTTTCCTTTGCACATAGTATGGATTGTAGG TAGGAAACTTCTAATAGATGGAGTTAGATCTTAGAGAAGCATCTCCAAAC TATGATAGAGCTTTTTTGTGGAAAATAAATGTTATTGGTATTTTTTAAAT TAAATAATACATTATAAAACTAGCGTACAATGAGGCTGCTTTAGTGATGG CTGTTGGAAACTAATTGGATTTAGGACTTGTAATCACACCTCAATTAAAA CAAAATTAGCATTGACTTCACTCGATTTAAGAAGGATTATTTGCCATTTG TTGTGATATCTCCGCCAACCTGCGCTGATTGAAGTAACATCTCGTATTTT TTTCGGGCTTGCAAACGATAACGTAACATTTCTTGCCGTATAAGAACACC ACGTAGAATATACTATTACACACTACTATCAAACAATGCACAAATTCTTT ATCCTCGATTTCCCGAAAATATCCGATCGGGTAACTGATGATGAATGTTA GTGTTGTAACCATGGTCGCATAGACAAGAGACATAGCATCGTTCATCGGT CCAGGTAGGCGGCGACCACGGAACGCTTGCGTTAGACAAACTAACTGAGC GATGATAAGGAAGCCTGTGATGACGTTTAGATGAAGTTGGACGTCTCCGT AAAAAGTTCTTGTCATGTTTTCTTTGTCTAGTATGATGCTTATCCTTGGC TTTCTGATAAAATTCAATATGTAGAAAACACTGTTGGTGACCAATAGAAA TATGAAAACGGTGAATACTTGGACGACTATCGTTCTTCGTGCCTCGCCCC CTGTCAATTGTATGTTAGAAGTGAAAGCATCAATCAATTTCTGTGATTTT GTATACACGAAAGCGAGGTTGGCAGTGTAAAGAAGTGATAGATTCAGGAA CTTTGCAACAGTTTTTGTTTTATCTATGTCGTCGTGAAGATAGACAAAAC AGCTGAATAGAATGGAAAGCAAGATGGTTCCGAGATGAAGAAACGAGAAG AAAACATCAGAAACTTTCACTGTCGGTGTTTGTCGGTGAATGATGAAAAT GACCAGCGTTGTCATGGTGATGAACACTCCAAGAGTTGTTAGTAGAAGTA TTGTAATCTTTTGATGGTGATTGAATTTTAAATATATGTTTGTGAATGGA TCTACGCATTCAGTTCTCAAGACGTTTGCGCTGCTTCGAATCCCAAAACA AGTGGTACAAGCTTCATTCCCGAAGTTGTTCTTGATCTGGTTCTGAGGAC ATAACTCGCATTTAAATCCAAGCTCTGATTGGATGAACTTGTCAGAACTT TCGATCTCACCATAAACCCTTTGGAAGCCTGGTGAACAGTTTAGTTTAGC GAAAGGTAATGGGTTTCGGTATTTGCTCAAAAATATATCTGACGAATAAG TTTCAATAAAAGGCTCCCAATTAGGATCCTCATTCCCTTTATTCTTCTCA AGAATTTTATTAAAAGGTATCATGAAATCTTTAGTTTTTTTCTCTAAAAA CACCATCATCATGGCGCCTTTGAGTGCTTGTATCTTATCGAAGCTTGTGA TGACAGTTTTGTTTTGCACATGCTCGACAGCAATGCCAAGAAAAGATGCC AACAGAAGCACATGTCTAATTGCGAGTAACTCTGTCAATTCGAAGATGCT GTTCGCCACATCTTCCTGTAGATCTCGTCGCAACTTGTAGCGTTGGAAAT TCTCCAAGCTGAACCAATGATCATGTGTGTTGAAGTCNGTGATTGAATTT TAAATATATGTTTGTGAATGGATCTACGCATTCAGTTCTCAAGACGTTTG CGCTGCTTCGAATCCCAAAACAAGTGGTACAAGCTTCATTCCCGAAGTTG TTCTTGATCTGGTTCTGAGGACATAACTCGCATTTAAATCCAAGCTCTGA TTGGATGAACTTGTCAGAACTTTCGATCTCACCATAAACCCTTTGGAAGC CTGGTGAACAGTTTAGTTTAGCGAAAGGTAATGGGTTTCGGTATTTGCTC AAAAATATATCTGACGAATAAGTTTCAATAAAAGGCTCCCAATTAGGATC CTCATTCCCTTTATTCTTCTCAAGAATTTTATTAAAAGGTATCATGAAAT CTTTAGTTTTTTTCTCTAAAAACACCATCATCATGGCGCCTTTGAGTGCT TGTATCTTATCGAAGCTTGTGATGACAGTTTTGTTTTGCACATGCTCGAC AGCAATGTCAAGAAAAGATGCCAACAGAAGCACATGTCTAATTGCGAGTA ACTCTGTCAATTCAAAGATGCTGTTCGCCACATCTTCCTGTAGATCTCGT CGCAACTTGTAGCGTTGGAAATTCTCCAAGCTGAACCAATGATCATGTGT GTTGAAATTGTGAAAACTTGTTTGGTCATTTTCAAAAGATAACATGTCAT GAGCGATCAAGGACGTTTTGTTGGTTGTTTCTACATTAACGTCTAATATC GCTAGAAATTCTTTTTGAAAAGGTCCAAATAGAATAATGGCTGACTCGCC CTTTCGCCAACGATTTAAGAGGTCTGATAGAATGTAGCCTTCAACATGAA CTTTTTCCGCATTGATGACGATTTTCTGCAAATGAAATTCTTTTCTACCA GCCAATTGGTCATAAGTACCATTGTAGTAATTGTTGAAGATCGGTTTCAA TACATCATCGTGGACTAAAAGTAGGGTCAAATCTTTCCATTGTAATTTCT CTAATACATATATGAGATACCTGGTATAGTCATTTATCTTCAAATCGTCA TCAGGGAATGCGACCGTCAAAAATGGTTCCCCAGTCATAAATTGCTTGAA CATTTTGGCTGTTTTTGTACTATCAGCATAGAAGACTACAAAAGCCAAAT TGGGTATTCTGCATTCTCTGTTTTGGTCGCAAGCAATGTGGAATGTGTGG CCCAGAAGAATTTCCAAAGCTGCTTTCAAAGACTCTTCTGTGTTGTTGCA TTTATAATGGAAACTATGGTATTTCAATTCGATGTAACGCATGTCTGTAT TGAGTCCAGTAATGTTTGCTCTTAAAAAACTGTCTGCCTCCTGTGTATTA TCTGAACAGTTTGGTAAGATAGCCACGACGTGATAAGTGAGTATGTGCTT GCTTAAAGCAATCTGTATTAAACTGGTAAAGAATAGAACGCCAAGAACTT TACAATTCATTTTTATCATCTCTCTGAGCAACTACTACGTTTCTTCTGAA TCAAAGATATGTTATATGTTGGGATACTTGTTAGTTTGGTCTCGATATCT AATCAAATATTGATTTCACCTGCCCGAATAAAAACTTTCTGTTGTTAAAT TTTAATAGGTTCTTTTTTTTTCAGTCCAATTATCATATGCTTTTGTAGCT TGATTCGCACTTTGGTACTCAATATATTGATTAAAAAATACTATACAAGA AGAAGTTTCTCGTGGCTTAGATCACGAGAATTACGCAAACGTTTTGAGAA TTTTTCTCCCATCATCGGTCATTCTGGAAGTTTTTCTCTCTAGTTTACTT TTGCCACAATAAGCTTCCAATATGCATATCACTTGGTCGATAGACTCAAA ATTACTTAAACTTATGGTACTTGTTATGGAAAAATTTGGGTCGTAATTGA GTCAATTGAAAGGTCATTCTCGTCTTCCTCTACAGTGTCACTTTCGATTT ATTTACCGCACAAAATTACCATATTAGGCCCCGACCAGTCCAAACAGAGT AAAATCGTTCCTTGTTCTAAACTTGGATAACATGCATTGGATTTTAACCA TATATTTCTCGCTTTGAGATATGAATAGAAGACCAGTACAGTATAATAAC TCCAGCATTCTTTTTCTTTCCCTGCTGATTACTACTCCATCCATTACTTT ACAGGATGTTGGTATCTGCGTTCAGCGAAGATCAGTTGAACCGTTACGAA ATGTACCGAAGAGCTTCCTTTCCAAAAGCTGCCATTAAAAGGGTGAGTGG CATATTGACCCAATATTAGAATTGTTAACTTGAAATATCAATGTGCAAAG GGATTAAATTTCTTGGGGGCCTTTCCATGATATATTAACGATTTTGTGTC TTTCTTTACCAGTAAACATTTTAAAAGTGGTATTTGTGCCTTTTTAACTT TCTACTAAGAAACAATTTTTGTGGATAACACGCAAACGCCTCGAATTTAC GAGATAGAGCATTGGTATCAATTCTTTTTCCTTAGACAAAACATTTTTGT TTATTCGACCGATTAGACACACTTCCGGGTCAAAAGCACGAATAAAAAGC TTTTCAAAGACCGAAATTGGACCGAGTCTTTGTCAATCTTGATATAATCC TTCTTCCCGTGTTTAATCGTTTATTACCCCCTTTTTTAGTTGATGCAGAC GATCACGGGCGGTGCGTCCGTTCCGCCCAATGTTGTCATAGCAATGGCTG GTATCGCCAAGGTATTTGTCGGGGAGGTCTCAGAAGAAGGTTAGTTATTA CATTCTCCATTAGACCATGAATATCCTTTCAGAAGAGATAGACATTACAA TAAGGTATACAAGGCGAGGTATATTTTCCATTTTTGGGAAGTGGAGATTT TCGTTTTTGGTAACAAGTTCCGATAGAGCCGTTACATTTTATCCGATTTT TAGGCTTCAGAAATTCTAATTTCACTTTTCTTTAAATTTGAATTCTAAAT TCGCATTATCTAGTCAAACTTGTATACTTTTTGCCACACCAAGTATCAGA TGGCGCAGTATTGTTATTGAACTGATGATTCTGGGAAGCGCTCGCACACC CATGGCTGAAAAGTAGGGAACGTTGGTGAAAATGCGCAACCAACTTTCTA GTACCCTAAAAACCAGAACCCTTTGATTTGTTCGAAAAAAGTCTTATATT GATTTTCGTATTTTATTAGCTTTAGACGTAATGGAGAGTTGGGGCGAGAC TGGACCCATTGAACCGAAACATTTGAGAGAAGCAGCAANAACATTTTAAA AGTGGTATTTGTGCCTTTTTAACTTTCTACTAAGAAACAATTTTTGTGGA TAACACGCAAACGCCTCGAATTTACGAGATAGAGCATTGGTATCAATTCT TTTTCCTTAGACAAAACATTTTTGTTTATTCGACCGATTAGACACACTTC CGGGTCAAAAGCACGAATAAAAAGCTTTTCAAAGACCGAAATTGGACCGA GTCTTTGTCAATCTTGATATAATCCTTCTTCCCGTGTTTAATCGTTTATT ACCCCCTTTTTTAGTTGATGCAGACGATCACGGGCGGTGCGTCCGTTCCG CCCAATGTTGTCATAGCAATGGCTGGTATCGCCAAGGTATTTGTCGGGGA GGTCTCAGAAGAAGGTTAGTTATTACATTCTCCATTAGACCATGAATATC CTTTCAGAAGAGATAGACATTACAATAAGGTATACAAGGCGAGGTATATT TTCCATTTTTGGGAAGTGGAGATTTTCGTTTTTGGTAACAAGTTCCGATA GAGCCGTTACATTTTATCCGATTTTTAGGCTTCAGAAATTCTAATTTCAC TTTTCTTTAAATTTGAATTCTAAATTCGCATTATCTAGTCAAACTTGTAT ACTTTTTGCCACACCAAGTATCAGATGGCGCAGTATTGTTATTGAACTGA TGATTCTGGGAAGCGCTCGCACACCCATGGCTGAAAAGTAGGGAACGTTG GTGAAAATGCGCAACCAACTTTCTAGTACCCTAAAAACCAGAACCCTTTG ATTTGTTCGAAAAAAGTCTTATATTGATTTTCGTATTTTATTAGCTTTAG ACGTAATGGAGAGTTGGGGCGAGACTGGACCCATTGAACCGAAACATTTG AGAGAAGCAGCAAGAAGATTGAAACAAAAACAATTGCTTCAAGCCACACG ATACAAAGGAACTGTCAAATTTTGAGTTCATTATTCGTCTGTTTCTTTCG AAAAGGATAGAGAAACTTGGCCCCTTGGCGTGGTTATTTCTCTGGTTGAA GGAAAGGGTGTCTGAAGGAAAAGGGGCATTTCCGATTTGAAGATTATGGA AGAAGAATTATGGCCAGGAGATTTCACTTACCCAAATTACTCAACAGATT AACTTCTTGGAAATCCTGTTGTCAATCAATTTAATTCTTTAAGTTGAGCG AACGACTTATATCTAACTATTCAATGGTTTGGGACTAGTCGAGAGATGAA GTCTTTTGCTCTATTTCATTGAAACATAGAATGAAAATGAAGTTAAAATC AATATTTTTGATGAGTACTCACAAAGTCATATATTTACATACCTTCCAAC GGTAATACGGATCATCGACACGATGCGACTCAAAGACTTCAATATGAAGC GCCAAAACTTTAAATACTACAATGGTCTACGGTTACGTGATAAAAATATA CAATTTTCTGGATAAAAGTATTAAATTGATATGATATAATATGGTATAAG ATGTAGAATATATATGTTATGATCATGAAGTTACTCTATGAAATATTTTT TAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043909XLOC_043909Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070558-exon-scaffold_56-1575043694:793738..794047TCONS_00070558-exon-scaffold_56-1575043694:793738..794047Clytia hemisphaericaexon
TCONS_00070558-exon-scaffold_56-1575043694:789806..789893TCONS_00070558-exon-scaffold_56-1575043694:789806..789893Clytia hemisphaericaexon
TCONS_00070558-exon-scaffold_56-1575043694:789309..789408TCONS_00070558-exon-scaffold_56-1575043694:789309..789408Clytia hemisphaericaexon
TCONS_00070558-exon-scaffold_56-1575043694:787292..788003TCONS_00070558-exon-scaffold_56-1575043694:787292..788003Clytia hemisphaericaexon
TCONS_00070558-exon-scaffold_56-1510915933:793738..794047TCONS_00070558-exon-scaffold_56-1510915933:793738..794047Clytia hemisphaericaexon
TCONS_00070558-exon-scaffold_56-1510915933:789806..789893TCONS_00070558-exon-scaffold_56-1510915933:789806..789893Clytia hemisphaericaexon
TCONS_00070558-exon-scaffold_56-1510915933:789309..789408TCONS_00070558-exon-scaffold_56-1510915933:789309..789408Clytia hemisphaericaexon
TCONS_00070558-exon-scaffold_56-1510915933:787292..788003TCONS_00070558-exon-scaffold_56-1510915933:787292..788003Clytia hemisphaericaexon
TCONS_00070558-exon-scaffold_56-1491911889:793738..794047TCONS_00070558-exon-scaffold_56-1491911889:793738..794047Clytia hemisphaericaexon
TCONS_00070558-exon-scaffold_56-1491911889:789806..789893TCONS_00070558-exon-scaffold_56-1491911889:789806..789893Clytia hemisphaericaexon
TCONS_00070558-exon-scaffold_56-1491911889:789309..789408TCONS_00070558-exon-scaffold_56-1491911889:789309..789408Clytia hemisphaericaexon
TCONS_00070558-exon-scaffold_56-1491911889:787292..788003TCONS_00070558-exon-scaffold_56-1491911889:787292..788003Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:787292..794047 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.4471 16.0176 10.0714 9.27958 6.22307 4.45043 6.33463 7.25597 4.60786 4.01005 5.02794 3.13322 2.99743 3.92491 2.84576 2.99393 4.76806 4.28679 1.98081 2.32425 3.83158 3.68488 11.3466 10.0591 4.2472 3.74444 2.05525 2.18159 3.67429 5.16174
Blast
BLAST of TCONS_00070558 vs. Swiss-Prot (Human)
Match: TAF11 (Transcription initiation factor TFIID subunit 11 OS=Homo sapiens GN=TAF11 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.954e-44
Identity = 74/113 (65.49%), Postives = 93/113 (82.30%), Query Frame = 3
Query:  288 EVERRKLQMLVSAFSEDQLNRYEMYRRASFPKAAIKRLMQTITGGASVPPNVVIAMAGIAKVFVGEVSEEALDVMESWGETGPIEPKHLREAARRLKQKQLLQATRYKGTVKF 626
            E E +K+Q+LVS+FSE+QLNRYEMYRR++FPKAAIKRL+Q+ITG  SV  NVVIAM+GI+KVFVGEV EEALDV E WGE  P++PKH+REA RRLK K  +  +++K  + F
Sbjct:  100 EDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSKHKKIIFF 211          
The following BLAST results are available for this feature:
BLAST of TCONS_00070558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF114.954e-4465.49Transcription initiation factor TFIID subunit 11 O... [more]
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