TCONS_00070555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070555
Unique NameTCONS_00070555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1930

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070555 ID=TCONS_00070555|Name=TCONS_00070555|organism=Clytia hemisphaerica|type=transcript|length=1930bp
TTATAGAAGCAaagataatttaaaaaaaacgtaaaaaaacatGTCAACAC
TATCAACCAATGAAGTGGCAGCAAAAAAACCGGCACCCGAACAAACTCCG
GCCCAGACCTCAAACCCGAAGGAACCTAGTACCCAACCCTCCACGTCAAG
CGATGCAGCTGGTTCAAGTAAGAGTACTGGGGGAGAGGGTAGTGGgaaga
aaaaattgataaaGAGCACTTCTTCGGTGAGCGACCTTCCCATGGCAGGG
GCATCTATGGACAATGATTCTGCAGTTTCTGAGGAACAAGAAGTGGAACG
ACGAAAGTTACAGATGTTGGTATCTGCGTTCAGCGAAGATCAGTTGAACC
GTTACGAAATGTACCGAAGAGCTTCCTTTCCAAAAGCTGCCATTAAAAGG
TTGATGCAGACGATCACGGGCGGTGCGTCCGTTCCGCCCAATGTTGTCAT
AGCAATGGCTGGTATCGCCAAGGTATTTGTCGGGGAGGTCTCAGAAGAAG
CTTTAGACGTAATGGAGAGTTGGGGCGAGACTGGACCCATTGAACCGAAA
CATTTGAGAGAAGCAGCACGAagattgaaacaaaaacaattgcTTCAAGC
CACACGATACAAAGGAACTGTCAAATTTTGAGTTCATTATTCGTCTGTTT
CTTTCGAAAAGGATAGAGAAACTTGGCCCCTTGGCGTGGTTATTTCTCTG
GTTGAAGGAAAGGGTGTCTGAAGGAAAAGGGGCATTTCCGATTTGAAGAT
TATAGAAGAAGAATTATGGCCAGGAGATTTCACTTACCCAAATTACTCAA
CAGATTAACTTCTTGGAAATCCTGTTGTCAATCAATTTAATTCTTTAAGT
TGAGCGAGCGACTTATATCTAACTATTCAATGGTTTAGGACTAGTCGAGA
GATGAAGTCTTTTGCTCTATTTCATTGAAACATAGAATGAAAATGAAgtt
aaaatcaatatttttgatgAGTATTTACAAAGTCATATATTTACATACCT
TCCAACGGTAATACAGATCATCGACACGATGCGACTCAAAGACTTCAATA
TGAAGCGCCAAAACTTTAAATACTACAATGGTCTACGGTTACGTGATAAA
AATGTACAATTTTCCTGATAAAAGTATAAAATTGATATGATATAATATGG
TATGAGATGTAGAATATATATGTTATGATCATGAAGCTACtctatgaaat
attttttaaatctattcGCTTTAAAAGTGTGAAATAATTCTTGTTTTGCT
TGCCATCTTTCAACCAATGCTTTGATTCTAACAAATTATATaacgttgaa
aagataattcagagtaCTTTAATCTTGGAGATACTTTGAAGCATCTTTTT
GTCAGTATATAATTATTTTACACGAAAAGCTATTGTATCAGAAGTCATGA
CCTCTAGAAGGTAGCTCGTGGGAGGTGAAAAACCCTGCTTTTCACTTCAG
AGGAGTACTTTCTTAAGGCTGCATAAATGGACTTTAacaatttatgaaaa
tattttcggatCGAGGAACGCAGGAAAAATCACCCTGACATTTTTGGTGG
ATTCATTGTAAAGAACTGTAGTCTATTGAAAAATAGTTACTTTTCGCTGT
GAATTCACCCTAAATAtccacttttttgttttcacatGTGGGAATGCCGA
GGGAAGGCTATTACGAAAAGAAAGAGTGTTTGATACGTTGTTGATCGTAC
ATTTCAGTGATTTCTCGCTTCAGCTTCGTTCTTCGATTCTGATACCACGT
TTTCAATTGGTTGTCTGTCATTTTCAATTCTCGTGACATACGCATGCGCT
CTGATGACGATAGATATCGACTTTGTTCAAATAGTTTTTCCAATTGAACA
ACTTGATAGGGTGTAAATGTATGGCGAAACGCCCTTCGTTTGGGTGACGC
TCTGCTGGTGTAAGGGTGGCCTAATCTCCT
Run BLAST on NCBI

protein sequence of TCONS_00070555-protein

>TCONS_00070555-protein ID=TCONS_00070555-protein|Name=TCONS_00070555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MSTLSTNEVAAKKPAPEQTPAQTSNPKEPSTQPSTSSDAAGSSKSTGGEG
SGKKKLIKSTSSVSDLPMAGASMDNDSAVSEEQEVERRKLQMLVSAFSED
QLNRYEMYRRASFPKAAIKRLMQTITGGASVPPNVVIAMAGIAKVFVGEV
SEEALDVMESWGETGPIEPKHLREAARRLKQKQLLQATRYKGTVKF
Run BLAST on NCBI

transcript from alignment at scaffold_56:785505..794049-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070555 ID=TCONS_00070555|Name=TCONS_00070555|organism=Clytia hemisphaerica|type=transcript|length=8545bp|location=Sequence derived from alignment at scaffold_56:785505..794049- (Clytia hemisphaerica)
TTATAGAAGCAAAGATAATTTAAAAAAAACGTAAAAAAACATGTCAACAC
TATCAACCAATGAAGTGGCAGCAAAAAAACCGGCACCCGAACAAACTCCG
GCCCAGACCTCAAACCCGAAGGAACCTAGTACCCAACCCTCCACGTCAAG
CGATGCAGCTGGTTCAAGTAAGAGTACTGGGGGAGAGGGTAGTGGGAAGA
AAAAATTGATAAAGAGCACTTCTTCGGTGAGCGACCTTCCCATGGCAGGG
GCATCTATGGACAATGATTCTGCAGTTTCTGAGGAACAAGAAGTGGAACG
ACGAAAGTTACAGTAAGGCTTTTTTTCCTTTGCACATAGTATGGATTGTA
GGTAGGAAACTTCTAATAGATGGAGTTAGATCTTAGAGAAGCATCTCCAA
ACTATGATAGAGCTTTTTTGTGGAAAATAAATGTTATTGGTATTTTTTAA
ATTAAATAATACATTATAAAACTAGCGTACAATGAGGCTGCTTTAGTGAT
GGCTGTTGGAAACTAATTGGATTTAGGACTTGTAATCACACCTCAATTAA
AACAAAATTAGCATTGACTTCACTCGATTTAAGAAGGATTATTTGCCATT
TGTTGTGATATCTCCGCCAACCTGCGCTGATTGAAGTAACATCTCGTATT
TTTTTCGGGCTTGCAAACGATAACGTAACATTTCTTGCCGTATAAGAACA
CCACGTAGAATATACTATTACACACTACTATCAAACAATGCACAAATTCT
TTATCCTCGATTTCCCGAAAATATCCGATCGGGTAACTGATGATGAATGT
TAGTGTTGTAACCATGGTCGCATAGACAAGAGACATAGCATCGTTCATCG
GTCCAGGTAGGCGGCGACCACGGAACGCTTGCGTTAGACAAACTAACTGA
GCGATGATAAGGAAGCCTGTGATGACGTTTAGATGAAGTTGGACGTCTCC
GTAAAAAGTTCTTGTCATGTTTTCTTTGTCTAGTATGATGCTTATCCTTG
GCTTTCTGATAAAATTCAATATGTAGAAAACACTGTTGGTGACCAATAGA
AATATGAAAACGGTGAATACTTGGACGACTATCGTTCTTCGTGCCTCGCC
CCCTGTCAATTGTATGTTAGAAGTGAAAGCATCAATCAATTTCTGTGATT
TTGTATACACGAAAGCGAGGTTGGCAGTGTAAAGAAGTGATAGATTCAGG
AACTTTGCAACAGTTTTTGTTTTATCTATGTCGTCGTGAAGATAGACAAA
ACAGCTGAATAGAATGGAAAGCAAGATGGTTCCGAGATGAAGAAACGAGA
AGAAAACATCAGAAACTTTCACTGTCGGTGTTTGTCGGTGAATGATGAAA
ATGACCAGCGTTGTCATGGTGATGAACACTCCAAGAGTTGTTAGTAGAAG
TATTGTAATCTTTTGATGGTGATTGAATTTTAAATATATGTTTGTGAATG
GATCTACGCATTCAGTTCTCAAGACGTTTGCGCTGCTTCGAATCCCAAAA
CAAGTGGTACAAGCTTCATTCCCGAAGTTGTTCTTGATCTGGTTCTGAGG
ACATAACTCGCATTTAAATCCAAGCTCTGATTGGATGAACTTGTCAGAAC
TTTCGATCTCACCATAAACCCTTTGGAAGCCTGGTGAACAGTTTAGTTTA
GCGAAAGGTAATGGGTTTCGGTATTTGCTCAAAAATATATCTGACGAATA
AGTTTCAATAAAAGGCTCCCAATTAGGATCCTCATTCCCTTTATTCTTCT
CAAGAATTTTATTAAAAGGTATCATGAAATCTTTAGTTTTTTTCTCTAAA
AACACCATCATCATGGCGCCTTTGAGTGCTTGTATCTTATCGAAGCTTGT
GATGACAGTTTTGTTTTGCACATGCTCGACAGCAATGCCAAGAAAAGATG
CCAACAGAAGCACATGTCTAATTGCGAGTAACTCTGTCAATTCGAAGATG
CTGTTCGCCACATCTTCCTGTAGATCTCGTCGCAACTTGTAGCGTTGGAA
ATTCTCCAAGCTGAACCAATGATCATGTGTGTTGAAGTCNGTGATTGAAT
TTTAAATATATGTTTGTGAATGGATCTACGCATTCAGTTCTCAAGACGTT
TGCGCTGCTTCGAATCCCAAAACAAGTGGTACAAGCTTCATTCCCGAAGT
TGTTCTTGATCTGGTTCTGAGGACATAACTCGCATTTAAATCCAAGCTCT
GATTGGATGAACTTGTCAGAACTTTCGATCTCACCATAAACCCTTTGGAA
GCCTGGTGAACAGTTTAGTTTAGCGAAAGGTAATGGGTTTCGGTATTTGC
TCAAAAATATATCTGACGAATAAGTTTCAATAAAAGGCTCCCAATTAGGA
TCCTCATTCCCTTTATTCTTCTCAAGAATTTTATTAAAAGGTATCATGAA
ATCTTTAGTTTTTTTCTCTAAAAACACCATCATCATGGCGCCTTTGAGTG
CTTGTATCTTATCGAAGCTTGTGATGACAGTTTTGTTTTGCACATGCTCG
ACAGCAATGTCAAGAAAAGATGCCAACAGAAGCACATGTCTAATTGCGAG
TAACTCTGTCAATTCAAAGATGCTGTTCGCCACATCTTCCTGTAGATCTC
GTCGCAACTTGTAGCGTTGGAAATTCTCCAAGCTGAACCAATGATCATGT
GTGTTGAAATTGTGAAAACTTGTTTGGTCATTTTCAAAAGATAACATGTC
ATGAGCGATCAAGGACGTTTTGTTGGTTGTTTCTACATTAACGTCTAATA
TCGCTAGAAATTCTTTTTGAAAAGGTCCAAATAGAATAATGGCTGACTCG
CCCTTTCGCCAACGATTTAAGAGGTCTGATAGAATGTAGCCTTCAACATG
AACTTTTTCCGCATTGATGACGATTTTCTGCAAATGAAATTCTTTTCTAC
CAGCCAATTGGTCATAAGTACCATTGTAGTAATTGTTGAAGATCGGTTTC
AATACATCATCGTGGACTAAAAGTAGGGTCAAATCTTTCCATTGTAATTT
CTCTAATACATATATGAGATACCTGGTATAGTCATTTATCTTCAAATCGT
CATCAGGGAATGCGACCGTCAAAAATGGTTCCCCAGTCATAAATTGCTTG
AACATTTTGGCTGTTTTTGTACTATCAGCATAGAAGACTACAAAAGCCAA
ATTGGGTATTCTGCATTCTCTGTTTTGGTCGCAAGCAATGTGGAATGTGT
GGCCCAGAAGAATTTCCAAAGCTGCTTTCAAAGACTCTTCTGTGTTGTTG
CATTTATAATGGAAACTATGGTATTTCAATTCGATGTAACGCATGTCTGT
ATTGAGTCCAGTAATGTTTGCTCTTAAAAAACTGTCTGCCTCCTGTGTAT
TATCTGAACAGTTTGGTAAGATAGCCACGACGTGATAAGTGAGTATGTGC
TTGCTTAAAGCAATCTGTATTAAACTGGTAAAGAATAGAACGCCAAGAAC
TTTACAATTCATTTTTATCATCTCTCTGAGCAACTACTACGTTTCTTCTG
AATCAAAGATATGTTATATGTTGGGATACTTGTTAGTTTGGTCTCGATAT
CTAATCAAATATTGATTTCACCTGCCCGAATAAAAACTTTCTGTTGTTAA
ATTTTAATAGGTTCTTTTTTTTTCAGTCCAATTATCATATGCTTTTGTAG
CTTGATTCGCACTTTGGTACTCAATATATTGATTAAAAAATACTATACAA
GAAGAAGTTTCTCGTGGCTTAGATCACGAGAATTACGCAAACGTTTTGAG
AATTTTTCTCCCATCATCGGTCATTCTGGAAGTTTTTCTCTCTAGTTTAC
TTTTGCCACAATAAGCTTCCAATATGCATATCACTTGGTCGATAGACTCA
AAATTACTTAAACTTATGGTACTTGTTATGGAAAAATTTGGGTCGTAATT
GAGTCAATTGAAAGGTCATTCTCGTCTTCCTCTACAGTGTCACTTTCGAT
TTATTTACCGCACAAAATTACCATATTAGGCCCCGACCAGTCCAAACAGA
GTAAAATCGTTCCTTGTTCTAAACTTGGATAACATGCATTGGATTTTAAC
CATATATTTCTCGCTTTGAGATATGAATAGAAGACCAGTACAGTATAATA
ACTCCAGCATTCTTTTTCTTTCCCTGCTGATTACTACTCCATCCATTACT
TTACAGGATGTTGGTATCTGCGTTCAGCGAAGATCAGTTGAACCGTTACG
AAATGTACCGAAGAGCTTCCTTTCCAAAAGCTGCCATTAAAAGGGTGAGT
GGCATATTGACCCAATATTAGAATTGTTAACTTGAAATATCAATGTGCAA
AGGGATTAAATTTCTTGGGGGCCTTTCCATGATATATTAACGATTTTGTG
TCTTTCTTTACCAGTAAACATTTTAAAAGTGGTATTTGTGCCTTTTTAAC
TTTCTACTAAGAAACAATTTTTGTGGATAACACGCAAACGCCTCGAATTT
ACGAGATAGAGCATTGGTATCAATTCTTTTTCCTTAGACAAAACATTTTT
GTTTATTCGACCGATTAGACACACTTCCGGGTCAAAAGCACGAATAAAAA
GCTTTTCAAAGACCGAAATTGGACCGAGTCTTTGTCAATCTTGATATAAT
CCTTCTTCCCGTGTTTAATCGTTTATTACCCCCTTTTTTAGTTGATGCAG
ACGATCACGGGCGGTGCGTCCGTTCCGCCCAATGTTGTCATAGCAATGGC
TGGTATCGCCAAGGTATTTGTCGGGGAGGTCTCAGAAGAAGGTTAGTTAT
TACATTCTCCATTAGACCATGAATATCCTTTCAGAAGAGATAGACATTAC
AATAAGGTATACAAGGCGAGGTATATTTTCCATTTTTGGGAAGTGGAGAT
TTTCGTTTTTGGTAACAAGTTCCGATAGAGCCGTTACATTTTATCCGATT
TTTAGGCTTCAGAAATTCTAATTTCACTTTTCTTTAAATTTGAATTCTAA
ATTCGCATTATCTAGTCAAACTTGTATACTTTTTGCCACACCAAGTATCA
GATGGCGCAGTATTGTTATTGAACTGATGATTCTGGGAAGCGCTCGCACA
CCCATGGCTGAAAAGTAGGGAACGTTGGTGAAAATGCGCAACCAACTTTC
TAGTACCCTAAAAACCAGAACCCTTTGATTTGTTCGAAAAAAGTCTTATA
TTGATTTTCGTATTTTATTAGCTTTAGACGTAATGGAGAGTTGGGGCGAG
ACTGGACCCATTGAACCGAAACATTTGAGAGAAGCAGCAANAACATTTTA
AAAGTGGTATTTGTGCCTTTTTAACTTTCTACTAAGAAACAATTTTTGTG
GATAACACGCAAACGCCTCGAATTTACGAGATAGAGCATTGGTATCAATT
CTTTTTCCTTAGACAAAACATTTTTGTTTATTCGACCGATTAGACACACT
TCCGGGTCAAAAGCACGAATAAAAAGCTTTTCAAAGACCGAAATTGGACC
GAGTCTTTGTCAATCTTGATATAATCCTTCTTCCCGTGTTTAATCGTTTA
TTACCCCCTTTTTTAGTTGATGCAGACGATCACGGGCGGTGCGTCCGTTC
CGCCCAATGTTGTCATAGCAATGGCTGGTATCGCCAAGGTATTTGTCGGG
GAGGTCTCAGAAGAAGGTTAGTTATTACATTCTCCATTAGACCATGAATA
TCCTTTCAGAAGAGATAGACATTACAATAAGGTATACAAGGCGAGGTATA
TTTTCCATTTTTGGGAAGTGGAGATTTTCGTTTTTGGTAACAAGTTCCGA
TAGAGCCGTTACATTTTATCCGATTTTTAGGCTTCAGAAATTCTAATTTC
ACTTTTCTTTAAATTTGAATTCTAAATTCGCATTATCTAGTCAAACTTGT
ATACTTTTTGCCACACCAAGTATCAGATGGCGCAGTATTGTTATTGAACT
GATGATTCTGGGAAGCGCTCGCACACCCATGGCTGAAAAGTAGGGAACGT
TGGTGAAAATGCGCAACCAACTTTCTAGTACCCTAAAAACCAGAACCCTT
TGATTTGTTCGAAAAAAGTCTTATATTGATTTTCGTATTTTATTAGCTTT
AGACGTAATGGAGAGTTGGGGCGAGACTGGACCCATTGAACCGAAACATT
TGAGAGAAGCAGCAAGAAGATTGAAACAAAAACAATTGCTTCAAGCCACA
CGATACAAAGGAACTGTCAAATTTTGAGTTCATTATTCGTCTGTTTCTTT
CGAAAAGGATAGAGAAACTTGGCCCCTTGGCGTGGTTATTTCTCTGGTTG
AAGGAAAGGGTGTCTGAAGGAAAAGGGGCATTTCCGATTTGAAGATTATG
GAAGAAGAATTATGGCCAGGAGATTTCACTTACCCAAATTACTCAACAGA
TTAACTTCTTGGAAATCCTGTTGTCAATCAATTTAATTCTTTAAGTTGAG
CGAACGACTTATATCTAACTATTCAATGGTTTGGGACTAGTCGAGAGATG
AAGTCTTTTGCTCTATTTCATTGAAACATAGAATGAAAATGAAGTTAAAA
TCAATATTTTTGATGAGTACTCACAAAGTCATATATTTACATACCTTCCA
ACGGTAATACGGATCATCGACACGATGCGACTCAAAGACTTCAATATGAA
GCGCCAAAACTTTAAATACTACAATGGTCTACGGTTACGTGATAAAAATA
TACAATTTTCTGGATAAAAGTATTAAATTGATATGATATAATATGGTATA
AGATGTAGAATATATATGTTATGATCATGAAGTTACTCTATGAAATATTT
TTTAAATCTATTCGCTTTAAAAGTGTGAAATAATTCTTGTTTTGCCTGCC
ATCTTTCAACCAATGCTTTGATTCTAACAAATTACATAACGTTGAAAAGA
TAATTCAGAGCACTATAATCTTTGCAAAATGAAGATGAAAAATGAATTTT
TTATCCTTTAATGCTAGAAACTTAATAGTTGTGGTATGGAGTTACTTTGA
AGCCCCCTGTAGTCAGTCATATAATTATTTTACATGAAAAGCTATTGTAT
CTAGAAGTCAGAGCCTATAGAAGGTAGCTCGTAGGAGCCGAAAAACCCTG
AACAATTTATGAAAATATGTTCAGATCGAGGAACGCAGGGAGTCATCCAT
ATAGTACGTACGCAAAATTTTTCAAAATATTGGATACCCCCTCCCTCCCC
TTGTACGAACCGAAACATTTGAGAGAAGCAGCACGAAGATTGAAACAAAA
ACAATTGCTTCAAGCCACACGATACAAAGGAACTGTCAAATTTTGAGTTC
ATTATTCGTCTGTTTCTTTCGAAAAGGATAGAGAAACTTGGCCCCTTGGC
GTGGTTATTTCTCTGGTTGAAGGAAAGGGTGTCTGAAGGAAAAGGGGCAT
TTCCGATTTGAAGATTATAGAAGAAGAATTATGGCCAGGAGATTTCACTT
ACCCAAATTACTCAACAGATTAACTTCTTGGAAATCCTGTTGTCAATCAA
TTTAATTCTTTAAGTTGAGCGAGCGACTTATATCTAACTATTCAATGGTT
TAGGACTAGTCGAGAGATGAAGTCTTTTGCTCTATTTCATTGAAACATAG
AATGAAAATGAAGTTAAAATCAATATTTTTGATGAGTATTTACAAAGTCA
TATATTTACATACCTTCCAACGGTAATACAGATCATCGACACGATGCGAC
TCAAAGACTTCAATATGAAGCGCCAAAACTTTAAATACTACAATGGTCTA
CGGTTACGTGATAAAAATGTACAATTTTCCTGATAAAAGTATAAAATTGA
TATGATATAATATGGTATGAGATGTAGAATATATATGTTATGATCATGAA
GCTACTCTATGAAATATTTTTTAAATCTATTCGCTTTAAAAGTGTGAAAT
AATTCTTGTTTTGCTTGCCATCTTTCAACCAATGCTTTGATTCTAACAAA
TTATATAACGTTGAAAAGATAATTCAGAGTACTTTAATCTTGGAGATACT
TTGAAGCATCTTTTTGTCAGTATATAATTATTTTACACGAAAAGCTATTG
TATCAGAAGTCATGACCTCTAGAAGGTAGCTCGTGGGAGGTGAAAAACCC
TGCTTTTCACTTCAGAGGAGTACTTTCTTAAGGCTGCATAAATGGACTTT
AACAATTTATGAAAATATTTTCGGATCGAGGAACGCAGGAAAAATCACCC
TGACATTTTTGGTGGATTCATTGTAAAGAACTGTAGTCTATTGAAAAATA
GTTACTTTTCGCTGTGAATTCACCCTAAATATCCACTTTTTTGTTTTCAC
ATGTGGGAATGCCGAGGGAAGGCTATTACGAAAAGAAAGAGTGTTTGATA
CGTTGTTGATCGTACATTTCAGTGATTTCTCGCTTCAGCTTCGTTCTTCG
ATTCTGATACCACGTTTTCAATTGGTTGTCTGTCATTTTCAATTCTCGTG
ACATACGCATGCGCTCTGATGACGATAGATATCGACTTTGTTCAAATAGT
TTTTCCAATTGAACAACTTGATAGGGTGTAAATGTATGGCGAAACGCCCT
TCGTTTGGGTGACGCTCTGCTGGTGTAAGGGTGGCCTAATCTCCT

Coding sequence (CDS) from alignment at scaffold_56:785505..794049-

>TCONS_00070555 ID=TCONS_00070555|Name=TCONS_00070555|organism=Clytia hemisphaerica|type=CDS|length=2955bp|location=Sequence derived from alignment at scaffold_56:785505..794049- (Clytia hemisphaerica)
ATTTGAGAGAAGCAGCACGAAGATTGAAACAAAAACAATTGCTTCAAGCC
ACACGATACAAAGGAACTGTCAAATTTTGACTTTAGACGTAATGGAGAGT
TGGGGCGAGACTGGACCCATTGAACCGAAACTTGATGCAGACGATCACGG
GCGGTGCGTCCGTTCCGCCCAATGTTGTCATAGCAATGGCTGGTATCGCC
AAGGTATTTGTCGGGGAGGTCTCAGAAGAAGGATGTTGGTATCTGCGTTC
AGCGAAGATCAGTTGAACCGTTACGAAATGTACCGAAGAGCTTCCTTTCC
AAAAGCTGCCATTAAAAGGATGTCAACACTATCAACCAATGAAGTGGCAG
CAAAAAAACCGGCACCCGAACAAACTCCGGCCCAGACCTCAAACCCGAAG
GAACCTAGTACCCAACCCTCCACGTCAAGCGATGCAGCTGGTTCAAGTAA
GAGTACTGGGGGAGAGGGTAGTGGGAAGAAAAAATTGATAAAGAGCACTT
CTTCGGTGAGCGACCTTCCCATGGCAGGGGCATCTATGGACAATGATTCT
GCAGTTTCTGAGGAACAAGAAGTGGAACGACGAAAGTTACAATTTGAGAG
AAGCAGCACGAAGATTGAAACAAAAACAATTGCTTCAAGCCACACGATAC
AAAGGAACTGTCAAATTTTGACTTTAGACGTAATGGAGAGTTGGGGCGAG
ACTGGACCCATTGAACCGAAACTTGATGCAGACGATCACGGGCGGTGCGT
CCGTTCCGCCCAATGTTGTCATAGCAATGGCTGGTATCGCCAAGGTATTT
GTCGGGGAGGTCTCAGAAGAAGGATGTTGGTATCTGCGTTCAGCGAAGAT
CAGTTGAACCGTTACGAAATGTACCGAAGAGCTTCCTTTCCAAAAGCTGC
CATTAAAAGGATGTCAACACTATCAACCAATGAAGTGGCAGCAAAAAAAC
CGGCACCCGAACAAACTCCGGCCCAGACCTCAAACCCGAAGGAACCTAGT
ACCCAACCCTCCACGTCAAGCGATGCAGCTGGTTCAAGTAAGAGTACTGG
GGGAGAGGGTAGTGGGAAGAAAAAATTGATAAAGAGCACTTCTTCGGTGA
GCGACCTTCCCATGGCAGGGGCATCTATGGACAATGATTCTGCAGTTTCT
GAGGAACAAGAAGTGGAACGACGAAAGTTACAATTTGAGAGAAGCAGCAC
GAAGATTGAAACAAAAACAATTGCTTCAAGCCACACGATACAAAGGAACT
GTCAAATTTTGACTTTAGACGTAATGGAGAGTTGGGGCGAGACTGGACCC
ATTGAACCGAAACTTGATGCAGACGATCACGGGCGGTGCGTCCGTTCCGC
CCAATGTTGTCATAGCAATGGCTGGTATCGCCAAGGTATTTGTCGGGGAG
GTCTCAGAAGAAGGATGTTGGTATCTGCGTTCAGCGAAGATCAGTTGAAC
CGTTACGAAATGTACCGAAGAGCTTCCTTTCCAAAAGCTGCCATTAAAAG
GATGTCAACACTATCAACCAATGAAGTGGCAGCAAAAAAACCGGCACCCG
AACAAACTCCGGCCCAGACCTCAAACCCGAAGGAACCTAGTACCCAACCC
TCCACGTCAAGCGATGCAGCTGGTTCAAGTAAGAGTACTGGGGGAGAGGG
TAGTGGGAAGAAAAAATTGATAAAGAGCACTTCTTCGGTGAGCGACCTTC
CCATGGCAGGGGCATCTATGGACAATGATTCTGCAGTTTCTGAGGAACAA
GAAGTGGAACGACGAAAGTTACAATTTGAGAGAAGCAGCACGAAGATTGA
AACAAAAACAATTGCTTCAAGCCACACGATACAAAGGAACTGTCAAATTT
TGACTTTAGACGTAATGGAGAGTTGGGGCGAGACTGGACCCATTGAACCG
AAACTTGATGCAGACGATCACGGGCGGTGCGTCCGTTCCGCCCAATGTTG
TCATAGCAATGGCTGGTATCGCCAAGGTATTTGTCGGGGAGGTCTCAGAA
GAAGGATGTTGGTATCTGCGTTCAGCGAAGATCAGTTGAACCGTTACGAA
ATGTACCGAAGAGCTTCCTTTCCAAAAGCTGCCATTAAAAGGATGTCAAC
ACTATCAACCAATGAAGTGGCAGCAAAAAAACCGGCACCCGAACAAACTC
CGGCCCAGACCTCAAACCCGAAGGAACCTAGTACCCAACCCTCCACGTCA
AGCGATGCAGCTGGTTCAAGTAAGAGTACTGGGGGAGAGGGTAGTGGGAA
GAAAAAATTGATAAAGAGCACTTCTTCGGTGAGCGACCTTCCCATGGCAG
GGGCATCTATGGACAATGATTCTGCAGTTTCTGAGGAACAAGAAGTGGAA
CGACGAAAGTTACAATTTGAGAGAAGCAGCACGAAGATTGAAACAAAAAC
AATTGCTTCAAGCCACACGATACAAAGGAACTGTCAAATTTTGACTTTAG
ACGTAATGGAGAGTTGGGGCGAGACTGGACCCATTGAACCGAAACTTGAT
GCAGACGATCACGGGCGGTGCGTCCGTTCCGCCCAATGTTGTCATAGCAA
TGGCTGGTATCGCCAAGGTATTTGTCGGGGAGGTCTCAGAAGAAGGATGT
TGGTATCTGCGTTCAGCGAAGATCAGTTGAACCGTTACGAAATGTACCGA
AGAGCTTCCTTTCCAAAAGCTGCCATTAAAAGGATGTCAACACTATCAAC
CAATGAAGTGGCAGCAAAAAAACCGGCACCCGAACAAACTCCGGCCCAGA
CCTCAAACCCGAAGGAACCTAGTACCCAACCCTCCACGTCAAGCGATGCA
GCTGGTTCAAGTAAGAGTACTGGGGGAGAGGGTAGTGGGAAGAAAAAATT
GATAAAGAGCACTTCTTCGGTGAGCGACCTTCCCATGGCAGGGGCATCTA
TGGACAATGATTCTGCAGTTTCTGAGGAACAAGAAGTGGAACGACGAAAG
TTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043909XLOC_043909Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070555-exon-scaffold_56-1575043694:793738..794049TCONS_00070555-exon-scaffold_56-1575043694:793738..794049Clytia hemisphaericaexon
TCONS_00070555-exon-scaffold_56-1575043694:789806..789893TCONS_00070555-exon-scaffold_56-1575043694:789806..789893Clytia hemisphaericaexon
TCONS_00070555-exon-scaffold_56-1575043694:788434..788533TCONS_00070555-exon-scaffold_56-1575043694:788434..788533Clytia hemisphaericaexon
TCONS_00070555-exon-scaffold_56-1575043694:787953..788003TCONS_00070555-exon-scaffold_56-1575043694:787953..788003Clytia hemisphaericaexon
TCONS_00070555-exon-scaffold_56-1575043694:785505..786883TCONS_00070555-exon-scaffold_56-1575043694:785505..786883Clytia hemisphaericaexon
TCONS_00070555-exon-scaffold_56-1510915933:793738..794049TCONS_00070555-exon-scaffold_56-1510915933:793738..794049Clytia hemisphaericaexon
TCONS_00070555-exon-scaffold_56-1510915933:789806..789893TCONS_00070555-exon-scaffold_56-1510915933:789806..789893Clytia hemisphaericaexon
TCONS_00070555-exon-scaffold_56-1510915933:788434..788533TCONS_00070555-exon-scaffold_56-1510915933:788434..788533Clytia hemisphaericaexon
TCONS_00070555-exon-scaffold_56-1510915933:787953..788003TCONS_00070555-exon-scaffold_56-1510915933:787953..788003Clytia hemisphaericaexon
TCONS_00070555-exon-scaffold_56-1510915933:785505..786883TCONS_00070555-exon-scaffold_56-1510915933:785505..786883Clytia hemisphaericaexon
TCONS_00070555-exon-scaffold_56-1491911889:793738..794049TCONS_00070555-exon-scaffold_56-1491911889:793738..794049Clytia hemisphaericaexon
TCONS_00070555-exon-scaffold_56-1491911889:789806..789893TCONS_00070555-exon-scaffold_56-1491911889:789806..789893Clytia hemisphaericaexon
TCONS_00070555-exon-scaffold_56-1491911889:788434..788533TCONS_00070555-exon-scaffold_56-1491911889:788434..788533Clytia hemisphaericaexon
TCONS_00070555-exon-scaffold_56-1491911889:787953..788003TCONS_00070555-exon-scaffold_56-1491911889:787953..788003Clytia hemisphaericaexon
TCONS_00070555-exon-scaffold_56-1491911889:785505..786883TCONS_00070555-exon-scaffold_56-1491911889:785505..786883Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070555-proteinTCONS_00070555-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:785505..794049 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.70998	6.63326	4.56424	3.89674	1.57413	1.08321	1.63468	1.17623	1.2799	0.931536	0.676828	0.97487	0.804468	0.923789	1.02494	1.12237	2.16939	1.87917	0.736348	0.89541	1.81879	2.1136	4.66758	3.84446	0.750928	0.967917	1.2238	0.665719	1.90835	2.05043
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006809TAFII28
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity
Blast
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BLAST of TCONS_00070555 vs. Swiss-Prot (Human)
Match: TAF11 (Transcription initiation factor TFIID subunit 11 OS=Homo sapiens GN=TAF11 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.272e-43
Identity = 74/113 (65.49%), Postives = 93/113 (82.30%), Query Frame = 2 
Query:  290 EVERRKLQMLVSAFSEDQLNRYEMYRRASFPKAAIKRLMQTITGGASVPPNVVIAMAGIAKVFVGEVSEEALDVMESWGETGPIEPKHLREAARRLKQKQLLQATRYKGTVKF 628
            E E +K+Q+LVS+FSE+QLNRYEMYRR++FPKAAIKRL+Q+ITG  SV  NVVIAM+GI+KVFVGEV EEALDV E WGE  P++PKH+REA RRLK K  +  +++K  + F
Sbjct:  100 EDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSKHKKIIFF 211
The following BLAST results are available for this feature:
BLAST of TCONS_00070555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF116.272e-4365.49Transcription initiation factor TFIID subunit 11 O... [more]
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