TCONS_00070551 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070551
Unique Name	TCONS_00070551
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1792

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_56:725596..730837-

transcript sequence

>TCONS_00070551 ID=TCONS_00070551|Name=TCONS_00070551|organism=Clytia hemisphaerica|type=transcript|length=1792bp
AAAATTAGCATGTTTGTCGGAAATTCTCTCTGGTGCTTCCTCTTTGACAT
TCGGTTGGACAGCACTGGCGCATGCGCAATCCTACACACACCGTTTGAAT
GAGACAGATATTTACGTTTCCACTACGGGGCCACCTGACAATGGACAGTT
CATCGCAAAACACACCAAACAAGTGATGAAAGCTTATGTTAAAGGTATCA
CCAAGGGCCGCAGGGGATTAGGGTCTATTTACATCAGAACATCAGGATCA
GGTGGCTACCATGGGGACCACTGTGGTGCTGACGGAACCGTTAATAATCT
TTATTCCATTGCGGTGGCAAGTGCTGCTAAAGATCACAGTCAAACTCTAT
TAGGAGAAGGTTGCGCGTCTATCTTGACTTCAGTATACACACAACAAACA
AAATGGTTTGTCAAAGGATTCACCAAAGATGTTATCACCACTGATTTAAG
AGGTTCATGCACCATCAATTCCGGTGGTTCATCAACCGCAGCAGCCATGG
TTTCCGCTATTGTTGCTCTTGCTCTCAGTGTCAATCAGCAATTGACTTGG
CGTGACGTTCAATACTTGATCATCAAATCATCCAATCAGAACAATCTTCC
TGTCACGTGGTACACCAATAGTGTTGGTCTTCGCTTCAACTCGCGTTACG
GTTTCGGGATTCTCGATGCCGGAAAAATGGTCACCCTTTctaaaacttgg
aaaacaacAGGCGTTATTATGGTTTCACAAAAGGTTCTAGTCACAAAATC
AATGGCGTTGACTTCATTGAAGAAGAACGAACTAATCAATCTGCCCATTA
AAATCACCAAGTCGAACATCAAATGCCTGGAACATGTTTCTTTGCTAACG
TCTATAAGATTCACTAAAAGAGGTCAAATTGCACTCTATCTGACGTCACC
AAGTGGTACCGTCACTGAGTTGCTTGGATATCGATACAAAGACACCAGTC
GTAGATGGTTTTCTAGATGGAGATTCACTTCTGTTCATTTCTGGGGAGAA
AAACCTCTTGGGAAATGGCTGgttcaaattgttcttaatgGAGCTGGCAT
CGGACAAGTTCGGAGAATGTTTATAGAGTTGTTTGGTTCCAGCAATGACG
AAACGTGCAAAACATTCGCCTGATGAAGAGACTTGATTAATTATTTGTGG
TTagagtctgtctcaaaataatctgtagcgaagataaaaaaaactgtaaC
TTTTACTAGAatttttttagaactttttttgGGTATATAGAAACTTTGAA
GCCTCCTGATTTCAATTATATAATAAACCAGCtgtgctggaaggtcagcc
cgaaATCCGAAATGATTGATTTTGTCATGTTTTTAGCtctcaaatatttt
tctaagcCTCAAAAAGATAGATGTTTTTCGAAAACGTAGAAGAATCGGAT
TTAAACTTTGAAGTCTTGACCACCGGGAAAACCACGAAAGGGATTTGAAG
AGTCACCAGGCCTGACCAATAATTTTTCCTTAGAATACTTACATTGAAAG
TTATATCCTTTAGAAGGTGGCCTGTGGGataaaaaaacacagaaaaaaaa
aggtttttgactCCACGAGTTACCTTCTAAAGGATTTATCTTTTGATGCA
GTAACTTATGTAAAAAATGATTTATATAGCTGAAATCAGGGGGTTATATC
GATTATATCGACTTGGTCGAACTTAGTTGGATTATGAAATAAAAACGTTT
CTGTatgttttcgacattttagttgTTTTCAGTCACAATGGATGATCCTA
TAGTTTGATGATAGTTTTTTTAAAACTAAAGCTTTCAGTATG

Run BLAST on NCBI

transcript from alignment at scaffold_56:725596..730837-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070551 ID=TCONS_00070551|Name=TCONS_00070551|organism=Clytia hemisphaerica|type=transcript|length=5242bp|location=Sequence derived from alignment at scaffold_56:725596..730837- (Clytia hemisphaerica)
AAAATTAGCATGTTTGTCGGAAATTCTCTCTGGTGCTTCCTGTAAGACTT
AGAATCTAGAATCACGGATTACACAAATTCCTAAACTGTCTCCCACTTTG
TATTTTGACTGCTTTTCTAAAGCTGAAATAAATCTACGAAAGCATCCAAC
GAGGACCTTTTTTAAATATCTGTTTCCCAGACATAGCCTTCCTGGAAAAT
TTGATCCGTTGGCCGAATATTTCAAAAATCTTATTCCTAGAAATGAAGAT
CTGTTTCTCCGCAAAACCTAATTTTTAATCTCAAAGTATCTTTCCTAGAA
AATTTGATCTGTTTCCACAATTTTCAGAATTAAAATTTTGATCTGTTTTC
CCAAATAGGATATCTGTGCCCCTCTCCTGGAAATTTTCATCTGTTTCCCT
TTCTTTTTGTTATTGATATCTATTTCCCCCATAAAGTCCAATCTGTTTCC
AATGCAATATCATCTTTTTTGGAAACAGATATCTGTTTCCCAATTTATTA
TGTCATCTCCTAGAAATATTGATCTGTTTCTCTCTGATGACGTCATCAGC
TGGAGCGGGGAAACAGATAGTTTTAAGGCAAAGATCTCTCCTAGAAAATC
GGATCTGTTTCCCCATTTTTCAAAAAAAGCTCTCTCCTGGAAAAGAGAAA
CAGATATTTCGGGGAAATGGGCTCGTTGGCTGCTTCTGAATCTATCAATT
GATAAGGTGGTAAGCGAAGTTCTTAAATCTAAGATTCAATACCCTCTATC
CTTTAGCTTTGACATTCGGTTGGACAGCACTGGCGCATGCGCAATCCTAC
ACACACCGTTTGAATGAGACAGATATTTACGTTTCCACTACGGGGCCACC
TGACAATGGACAGTTCATCGCAAAACACACCAAACAAGTGATGAAAGCTT
ATGTTAAAGGTATCACCAAGGTAATCATATTGGATATAAAGTCCCCAGCC
AAGGCTTCAACAAGCTTCACTAATTTTCAAAAAGCTAATAATTACACAAT
TGAAACGGTAGAGAGTGTCGTTCCTCGAAAGTAAGATCCATTTACTTTCC
ATGCTATTATTTTTCAGGGCCGCAGGGGATTAGGGTCTATTTACATCAGA
ACATCAGGATCAGGTGGCTACCATGGGGACCACTGTGGTGCTGACGGAAC
CGTTAATAATCTTTATTCCATTGCGGTGGCAAGTGCTGCTAAAGATCACA
GGTTCGTTGACGTATTTCATTCCATAACACTAAGCATAGACAACTGCTCC
TTTATAAATCTCTTTTTACTTCACTGTCCCTAGATAACAAAACTAAAATA
TTGAAACTTTGCTAGACTCGAGATGTATTCACACAAAGAACCCTTCAAAT
GAAACAATGATCCTTTTATTTCAAGAGAGCGCACAATCAAACTCTCATTT
CCATTTCAATTTCCCAATAAAGCGCCATTCATGTTCGTTCAAGTGGTAAT
TGAAATAAAGGCCAGGGCATTTTTAAGCAAAGATGTACCATAAGTATCTC
TTCATACAGGATGTTAGAAGTATATTTAATTGCTTTTTGATGACCACACT
TGCGTAATTTTAATCTAGATTAGATGTTTAACAGTACACATTAGCAACAA
TTTCTATAATTGTTCATCTGACGTAAAAAATACCATATCTTTCGTTGCTT
ATCTTTTATTCACGTAAAAACTTCCCAAAATATATCCTGAGATATTATGA
AGAATCGAAGAAGAGTAACGAGACGAATCGTTGTATAACTTTAGAATAGT
TGTACAAGAAAACTGAACATTTTAAACGACACACTTGATACAACCTGGCT
ATCATTAGCCTTTTTCATAGGATTCATTTTTTAGTGTATGAAATTTTTCT
ACGTCACTGCAGTGAATCGAATAAAAATCTTACAAGACAACAACAAAAGA
AATGGTTTCTGAATTCCCAAGCCATAAATTATGACAAAATCAATTTTTTA
AACGTTTTTTTTAATTTTTTTTCCTCACTGTAAAGGGGGGAATCTGCACA
GATTTGGTAACCTTTCCCCTGTACACTTTTCCTACGAGGGCACCGAACGA
TCAAACTTTGATTATGATTTTTCAATCTTCCAGTCAAACTCTATTAGGAG
AAGGTTGCGCGTCTATCTTGACTTCAGTATACACACAACAAACAAAATGG
TTTGTCAAAGGATTCACCAAAGATGTTGTAAGTCTCTCTACCCATTCCTA
AAACTGACTTAAAAAACTTAAGCTTACAAGTAAACCATAATATTTCAATT
TTGTCCGATCCAGCAAAGTAAAGGTGTTCCCTATGGGGGAATAAGACGAA
CATTCATGGGATTCTAAATCCAAAACTAAAACAAAACTCTTTGCAAATAT
CTGAAAATAGGGGTTCAGCTTATCATTCCAAAAAAAAGAAAAGAAAAATG
AAAGTAATGGGATTCCATAGCCCTGTTGAATTGAGAAAGATCCTCAATCG
TATTATAGTCTAGCTCGGGGAAAAATCCACTGTAAGGATATTAATAAATT
GACAATATTTTCAAAAATCATAAAAGGATCGCGGTTTTTCCCAAATTTAT
TGAGAAATCCCAAAGAGAAAATGTGGGAGATCAAAAATCCAAGAATCAGC
AGATTCCTAAAAACTAAATCATTTAGGCCTCCCTCCCTTCTAGTTTCCCT
TAAAGACTACCTCCATCTCTGTCCAAAAAATAGCAAGTTTATGTATTTAT
TTGAACCCTTTGAGGACGGTGGAGTGATAAAAGCCATTTGAAAAAACCCG
CTGTTTTGACCAGAAAAACTCAAGGACGGTAAAAGGCGCTAATTTACCAT
ATTTATCAGTCAATCGGGATCTAGACAAATAAGAACCTTACCGTCTCCGT
TACAGAAAAACACACATACTAACTTAACTAACTCACCGATTATAATCAAA
ATACAGATTCTTATTACCTTAACACTTTAGATCACCACTGATTTAAGAGG
TTCATGCACCATCAATTCCGGTGGTTCATCAACCGCAGCAGCCATGGTTT
CCGCTATTGTTGCTCTTGCTCTCAGTGTCAAGTAGGTATCATGATCTTCT
TCATTTATAGCCTGAAAAACGAGTAAAAACAGATCATTTTTTCTTCAAAT
TATCAGCATTTCTCTTTTATCTTAAATATCTCTTCATTGATATGTATTAG
TTATCGCATAGTGCCGAAGGGTGTTTAAAATTCCAGCCATGGCGTTCTAA
ATTTATAACATGGTTCCAGCCCAAAAATATGGGTAGCTTATATAGATAAA
ATGTGTACTTGACGGATGACAACAAGTCAAAACATATCTTTCAGTCAGCA
ATTGACTTGGCGTGACGTTCAATACTTGATCATCAAATCATCCAATCAGA
ACAATCTTCCTGTCACGTGGTACACCAATAGTGTTGGTCTTCGCTTCAAC
TCGCGTTACGGTTTCGGGATTCTCGATGCCGGAAAAATGGTCACCCTTTC
TAAAACTTGGAAAACAACAGGCGTTATTATGGTTTCACAAAAGGTTCTAG
TCACAAAATCAATGTAAGTATTTTTCGTCAATATCAAATTTAGTTGTGCT
TTGTATAAAAATTTTGAATGTATTGTTTTAAGGACAATTTTCTGAGACAT
TAAATGATTTTTTTTATGAATTGAAAGTAGTCTTAATAAAATCCGCTGTT
CTACACAATTTTTTGCATTTGAATATGGTTCCATAGTTCTATTAATTCAA
CGTTACTTTATGCAAGGGGATCTTACATTTTTCACAAGAGCTCTCCAACC
TACAATACCGTCGTCGAAAAGCATTTTCCTGTTTGTTGTTGTCAGTCTTC
TTTAAAAGACCGCACCGCTAAGGGTTGATATGTGTCTTGACATTGATTAC
TTACACGTCATTATCTCTTCATTGTTTTAGGGCGTTGACTTCATTGAAGA
AGAACGAACTAATCAATCTGCCCATTAAAATCACCAAGTCGAACATCAAA
TGCCTGGAACATGTTTCTTTGCTAACGTCTATAAGATTCACTAAAAGAGG
TCAAATTGCACTCTATCTGACGTCACCAAGTGGTACCGTCACTGAGTTGC
TTGGATATCGATACAAAGACACCAGTCGTAGATGGTTTTCTAGATGGAGA
TTCACTTCTGTTCATTTCTGGGGAGAAAAACCTCTTGGGAAATGGCTGGT
TCAAATTGTTCTTAATGGTATGGCTTTTTGGATATAATATTTCAGACCTT
ATTTGTGTTGGCAATACGTCTAGAGACGTATAACAGAGAATCAAAACTGG
GTCACTCGATCTAGAATTGGCAGAATGTTCAGTTTTTGATATTAGATAAT
AGAAAATTAGGCTACTAGTAAATTCAAATAAAACTGAAAAAGTTCGTTCT
TCTGACTTACAATAATCTCACATTACATTTTGATCTCATGTCAGCGCTTA
CATTGCACTGGTGAAAGCCTGGAAAACATTTCCTTAAGGAGCGTACCCAT
AGGGTCACTGGTTCAAAACTTTTCTCTTCTATATTTTTAGGAGCTGGCAT
CGGACAAGTTCGGAGAATGTTTATAGAGTTGTTTGGTTCCAGCAATGACG
AAACGTGCAAAACATTCGCCTGATGAAGAGACTTGATTAATTATTTGTGG
TTAGAGTCTGTCTCAAAATAATCTGTAGCGAAGATAAAAAAAACTGTAAC
TTTTACTAGAATTTTTTTAGAACTTTTTTTGGGTATATAGAAACTTTGAA
GCCTCCTGATTTCAATTATATAATAAACCAGCTGTGCTGGAAGGTCAGCC
CGAAATCCGAAATGATTGATTTTGTCATGTTTTTAGCTCTCAAATATTTT
TCTAAGCCTCAAAAAGATAGATGTTTTTCGAAAACGTAGAAGAATCGGAT
TTAAACTTTGAAGTCTTGACCACCGGGAAAACCACGAAAGGGATTTGAAG
AGTCACCAGGCCTGACCAATAATTTTTCCTTAGAATACTTACATTGAAAG
TTATATCCTTTAGAAGGTGGCCTGTGGGATAAAAAAACACAGAAAAAAAA
AGGTTTTTGACTCCACGAGTTACCTTCTAAAGGATTTATCTTTTGATGCA
GTAACTTATGTAAAAAATGATTTATATAGCTGAAATCAGGGGGTTATATC
GATTATATCGACTTGGTCGAACTTAGTTGGATTATGAAATAAAAACGTTT
CTGTATGTTTTCGACATTTTAGTTGTTTTCAGTCACAATGGATGATCCTA
TAGTTTGATGATAGTTTTTTTAAAACTAAAGCTTTCAGTATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043907	XLOC_043907	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_56	supercontig	scaffold_56:725596..730837 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0608403	0.0396996	0.203006	0.0449313	0.441857	0.331792	0.324877	0.483053	0.098207	0.648294	0.145178	0.20149	0.0969024	0	0.109728	0.133713	0.188574	0	0.0578804	0.319352	0	0.0968355	0.0502476	0.220762	0	1.76249e-08	0	2.87414e-07	0	0

Blast

[Close]

BLAST of TCONS_00070551 vs. Swiss-Prot (Human)
Match: PCSK5 (Proprotein convertase subtilisin/kexin type 5 OS=Homo sapiens GN=PCSK5 PE=1 SV=4)

HSP 1 Score: 190.274 bits (482), Expect = 2.069e-50
Identity = 121/359 (33.70%), Postives = 198/359 (55.15%), Query Frame = 2

Query:   59 TALAHAQSYTHRLNETDIYVSTTGPPDNGQFIAKHTKQVMKAYVKGITKGRRGLGSIYIRTSGSGGYHGDHCGADGTVNNLYSIAVASAAKDHSQTLLGEGCASILTSVYTQQTKWFVKGFTKDVITTDLRGSCTINSGGXXXXXXXXXXXXXXXXXXNQQLTWRDVQYLIIKSSNQNNLPVT-WYTNSVGLRFNSRYGFGILDAGKMVTLSKTWKTTGVIMVSQKVLV-TKSMALTSLKKNELINLPIKIT------KSNIKCLEHVSLLTSIRFTKRGQIALYLTSPSGTVTELLGYRYKDXXXXXXXXXXXXXVHFWGEKPLGKWLVQI------VLNGAGIGQVRRMFIELFGSS 1093
            T +  A+S +       IY ++ GP D+G+ +        +A+  G+  GRRGLGS+++  SG+GG   DHC  DG  N++Y+I+++S A+   +    E C+S L + Y+       + + K +ITTDLR  CT N  G+S +A M + I+ALAL  N  LTWRDVQ++I+++S   +L    W TN+ G + +  YGFG++DA  MV  ++ W T    +  Q V V +    + +++ N  +    K +        ++  LEHV +  +I   +RG +A+YLTSPSGT ++LL  R  D S   F  W F ++H WGE+  G W++++      + N    G+++   + L+G+S
Sbjct:  250 TDMVEAKSVSFNPQHVHIYSASWGPDDDGKTVDGPAPLTRQAFENGVRMGRRGLGSVFVWASGNGGRSKDHCSCDGYTNSIYTISISSTAESGKKPWYLEECSSTLATTYSSG-----ESYDKKIITTDLRQRCTDNHTGTSASAPMAAGIIALALEANPFLTWRDVQHVIVRTSRAGHLNANDWKTNAAGFKVSHLYGFGLMDAEAMVMEAEKWTT----VPRQHVCVESTDRQIKTIRPNSAVRSIYKASGCSDNPNRHVNYLEHVVVRITITHPRRGDLAIYLTSPSGTRSQLLANRLFDHSMEGFKNWEFMTIHCWGERAAGDWVLEVYDTPSQLRNFKTPGKLKEWSLVLYGTS 599

The following BLAST results are available for this feature:

BLAST of TCONS_00070551 vs. Swiss-Prot (Human)

BLAST of TCONS_00070551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PCSK5	2.069e-50	33.70	Proprotein convertase subtilisin/kexin type 5 OS=H...	[more]

You are here

TCONS_00070551 (transcript) - C. hemisphaerica