TCONS_00070528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070528
Unique NameTCONS_00070528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length891

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070528 ID=TCONS_00070528|Name=TCONS_00070528|organism=Clytia hemisphaerica|type=transcript|length=891bp
GGCACAATGAtagtaaacaaaaaaactagTACTGTGGAGTGATGAAGAGA
GAGAGCATCGTCAGTTAAAGGATACAATGGAAATTTTTTGTTGGAAACcc
tctgttttctttttatacaTCTTCTACTTAATATTTGTCGGGCAAGTTAC
CACTGTTCCCGATCTagtgaagaaaaatcaaaatggtagtgATATTGACC
AGTTTGGCGATACCATCTTTAACATCATTAATGACAACGCCGATCCAGTT
TGCGGGGATGTTTTGACACTTGATGGCAAAAATTATATGGAAAATTCATG
CGCAAAGTATTTAACAAACATTGATGGTATAAACATGATatcagatttca
aattttttgggaGACCTTTTGATCAGTCTGACGGTACGACTAATAGCGGC
CAAGCCAAGATACATTTCAATGGATTCTTGTCATTTGGTGCAGATTCTCA
AAACATTGCGAACAAGCAAGCCTGTTTTCACTGGGATAAATCATCATCAC
CTTCAAAATATCTTTATAATTTTCTGGCACCCTATTGGATGAGGTATTTT
GAAGGATCAgtccattttttcgaattatCAGAAACAGACCATAGCAACGA
TTGGGAGACCATCTTTGCAGATTTGCAACAAACTGGATTCAATCTTGATA
CAAACTCGGCTAAGGAAAGAATTTTAGTTTTCACATGGCTTCGAATGGCT
TCGGATGGTACGAAAAATGGAAATGTTGTGGAGGAAAAACTGATGAACAC
ATTCCAATTGTACTTGATATTACATGGCGGTGTAACGTACGCACAATTCT
ACTACAGAGCTTTGGATACCAATCATTTAGTTATCGATGATGATGTTGGG
ACAACTTGTTATGGGCAGgTTGGAATAGCAAGAGATCTCgg
Run BLAST on NCBI

transcript from alignment at scaffold_56:548791..553315-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070528 ID=TCONS_00070528|Name=TCONS_00070528|organism=Clytia hemisphaerica|type=transcript|length=4525bp|location=Sequence derived from alignment at scaffold_56:548791..553315- (Clytia hemisphaerica)
GGCACAATGATAGTAAACAAAAAAACTAGTACTGTGGAGTGATGAAGAGA
GAGAGCATCGTCAGTTAAAGGATACAATGGAAATTTTTTGTTGGAAACCC
TCTGTTTTCTTTTTATACATCTTCTACTTAATATTTGTCGGGCAAGTTAC
CACTGTTCCCGATCTAGTGAAGAAAAATCAAAATGGTAGTGATATTGACC
AGTTTGGCGATACCATCTTTAACATCATTAATGACAACGCCGATCCAGTT
TGCGGGGATGTTTTGACACTTGATGGCAAAAATTATATGGAAAATTCATG
CGCAAAGTATTTAACAAACATTGATGGTATAAACATGATATCAGATTTCA
AATTTTTTGGGAGACCTTTTGATCAGTCTGACGGTACGACTAATAGCGGC
CAAGCCAAGGTAAGACGTAAAATAAGTTTTTATTTTCTAGCACCTTCTTT
ACAAGTGCTAATTATAAGGGCTTAGAAAAAAAGCTGCCGAGGAAAGGTGC
TTTGACCATAGTCAGAAAATTTCTTAAGGGATTTGAAGATGAAACTTTTG
TTAATAGCCTTTGCAAGTTGTTCGGTAATTTATTCTGTCAATAGTAATTA
AGAATTTAATTACAAAACTGACGTTTTGAACAAAAAAAAAACGTCAATAG
AATGTTCTACTACCATCTTAAACTAAAAATGTTAAGTTTCAATACACTCT
TCTCGAGATGCATAAATTTATTGTTGTCCTCGTTTTCAAACAGATTTCAT
TGCTATAAAATTACATATTCACAATGATAATTGTGTTCTTTAAACCTCAT
GAGACATTTTGAATTTCAAGTACTTTTGTTTTAGAGTTAATGTTATTTTT
TTTTTGGAATTTAAATTGGTTTAAATGTATAATTTCGTAGCAATGAAATC
TGTTTGAAAACGAGGACAACAATAAATTTATGCATCTCGAGAAGAGTGTA
TTGGTAATTAACTTTTTTCCTTCGAAATTTTTTTAAATTGTCCGTAAAGA
ATTTAACTGTTTGAAATTTTTCGGAAAAATTGGTCTTCAAAGTTGAAATA
CTGCTCTTCGCAAAAGTCTTCATTTTCTTCTTCGTTAAATTTTTTCATCG
CGATTTTTAAATTTTCAGATTCAAGAATAGTTGGCCTAAGAGAAAATGTA
TAACATACCATAGTTTTGTTGGCTACATCAGTATATTTTGTACATGACAA
ATGAAAAATTCACTATGGTCAGAGCCCTTAAAATCAGCAAGGCAAAAAAA
TTGATATTCTAGAGAATATATTTCTTTTTCATCATAAAAGTTGAGCGATT
AAGTGGATTATAAAAGGGGTGATACTTCTGAAATTTTGCACATTCATAGA
GTAAAGGAGAAAAAATGAAAGAGAATATCTTGAAAATTATTTTTCTGATA
GCGTCAGCACTTTTTTAAGAAAATTTCATCCATAATGAACTCTTGCACAT
TATTTGCCACTATAGATACATTTCAATGGATTCTTGTCATTTGGTGCAGA
TTCTCAAAACATTGCGAACAAGCAAGCCTGTTTTCACTGGGATAAATCAT
CATCACCTTCAAAATATCTTTATAATTTTCTGGCACCCTATTGGATGAGG
TTAGACTTTATCTTACCTTAAGAGAAGAAATTTTGGCAAAAGAGCCCATT
CGCCAATATTTGGTGCAATTTGGCGGAATTTATTTAGGCGATTTGATAAA
ATTTCTAAATTTGGCGAGAATTAATTTTGGCGAGCAACCCATTTTTGTTC
AATATTTCAGCTGAAAAAAGAAGAAAAAGGGGTTTTTAAGAGAAATAGAA
ACTAAATTGAAAGAAAATTAAATTTGGAGAGAATTTATTTTGACGAATGA
CCTATAAATTTAAATTTGAAAAAAATTCTTCTCTTAAGGTACTTATTTGT
AATTTTTTTATGTAGACCAAATCAAATGAGAGGGATTTTCGCCATCATAT
ATTTCTCTCTTAATAAACGAGGCCAAAAATAGCTAAAAATTGGCAAAATG
GACCCACTGCAGCATGTACAATATTTGGATAAATATATTTTTTTAAAGAC
AATGTATTAAAATATGCAGGCTGAAAGCTTTGGAACAGACTTTTGGTGAC
AATATGTCTTAATTCTTTATTAACAAGGTATTTTGAAGGATCAGTCCATT
TTTTCGAATTATCAGAAACAGACCATAGCAACGATTGGGAGACCATCTTT
GCAGATTTGCAACAAACTGGATTCAATCTTGATACAAACTCGGCTAAGGA
AAGAATTTTAGTTTTCACATGGCTTCGAATGGCTTCGGATGGTACGAAAA
ATGGAAATGTTGTGGAGGTAAGCGTCCGGTTTTTGATAAGCCTTATTCAT
GAACAGAAAAGTTGATATAGTTAACTCAATTGTGTCGAAAGACTAATTTT
CATGGAACTGCATCACTCTGGGGTTGATGTTTCTTTCATTTTGAGTGCAG
GAAACCTCAAAGTTGGACAATAAACAATCATGTTTATCGATCGTACGTCC
GACAAAAAATTAATTAAAAAACAGGCCCAGATACAACAAAATGCATAATT
AGTAATTAGTTTTATATCAGCCCTAGAGACAGTTTCATAAGCCCGGAGTG
CTTATGATACTACAACTCAATAACTGTGTAAATACATCAAGAACGCTAGA
TCTTCTTTGTGATGTAGCGTCGTTTTTATCAGGGAAAGTTGCACTGCATT
GGCTTCTTAGCGGGAAGCGTTCGAATGTTTATGTTTATGATTGGCTCTTG
ATTTTGGTGCGGTTGTTTTGCAAGCCAATCAATCACCTGACTCAAAAGCA
AAAAATGTAGTTGCATCTACCTAGCCAGAGTGAATACGTGCCATGTGTTG
AGTATCATAATCTGCTCGGAGACAGTCAGAGATAAGCCTTTGGTAGTTGT
GGATGTTGAATTTCTTTGTAAGAAACATTGTTTGTACATTAGCGAGATTA
TGTATAAGGAATTTTCTACGGCTACGGTTAAAGCGGCGAGGGAAATGGCG
AATAAGGCAAGTAATGGTGGGTGAAAGCAAGTTCGATATTTGACGTACGG
CATTATGTTGGCTTTGCTTATACGGTGTTTTGGTGTTTTTTCCGTATAGA
GCAAAGTAGACAACGACATGTCGCCTTTGGTGACGACCTGCACGGGCAGC
CCTGCAACCGTAGCCGTAGGATATCTCCGATACATAATCTCGCTATTGTT
TATACTTCTGCAGGAAAAACTGATGAACACATTCCAATTGTACTTGATAT
TACATGGCGGTGTAACGTACGCACAATTCTACTACAGAGCTTTGGATACC
AATCATTTAGTTATCGATGATGATGTTGGGACAACTTGTTATGGGCAGGT
AAGATTTAAGTCACTCCAAAGTGGCTCTAATCAGTTATATAATTTTTAAG
GATTACAATAATCGAAATGAGCCTCATGATTCTTGTTTACACTGTAGATG
AAAGAACGGGAAATTGCATCTTTTTAACTAAAGAAAACAACCGAGCGCCG
GGCATCATTAGTAAAAATGCTTAATTTTTTTTTAATCTTAGCTTTTCTTA
TAATCTTAGAATTTCTTATTAAAAAATTCTTCTTAAAACGATGTATGTCA
TTTCGAAATTTGCGTTAAGCCGCTCTTTTTCACCGGGATGAAAGCCGCGC
CATTTTACTGTTTACGATTGAATACACCTTGTCCGATAAAACGGAGCGTC
CCCTCAACAATCAAATCACTTGCTATGCAATTTCATTTGAGATATGACCA
ATCGGATCGATTTGATTGTTGAGGGAACTTTTGGATTGTTATGTGTAAGT
ACGGTATTTTAGACCATGTTCAGACGTTACGGTTCCGTATCGCTCCGGTG
TTGTATTTGTTACAGATAGGAAGTGTTCATACTCATTTCGGAACGTTTCG
GAGTAGGAAAACGGAGCAGTTCCGTTCCGATGAAAACAGTGGAGCGAAAC
TGTTTCGATCTGTTTTGCTTTGTAACGTCTTCTTTTTTGACGTTTCCAAT
TTTGACGTTCAGACTTGTTTCGTTTCGTAGCGAGCACCTCACTAAAAACT
GGGATTTTTTATCTCGTTTCTTAGTGAGTTCCACTTTGACGATTTTCGAA
AAATAGAAGCCTTTCAAGTGCTTTGACGCAAGTTCGATTATTTTACTACT
GCAGGAGCTTCGAAATTTAAAAGTGACGTCAAAAATTGAATATTTAGAGC
CCGAAAACCCGGGCTCAAAACATTCAAAAAAGTTGCAAAATGGAATAGAC
ATTAATTGCGTCAAAAAACGCGGGTGACGTCTAGTATAGGCTTAGTGTTT
CGGAACTGTTTCGTTTTTGAGTGAAACGGAGCGTAGCGTGTGTACGTGGT
CTTATTCCAAGCACATTAAATGTAATTTTTAGGTTGGAATAGCAAGAGAT
GTCGGTATAAAAAATATTTTTGGTACAGAAAGTGTAGGATACCGGCTTGG
AAGATTACCACAAGTTGCTGAATATTCTAAAAAAATTGAATTTAATTTTT
AGGTTGGAATAGCAAGAGATCTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043901XLOC_043901Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070528-exon-scaffold_56-1575043694:552907..553315TCONS_00070528-exon-scaffold_56-1575043694:552907..553315Clytia hemisphaericaexon
TCONS_00070528-exon-scaffold_56-1575043694:551717..551850TCONS_00070528-exon-scaffold_56-1575043694:551717..551850Clytia hemisphaericaexon
TCONS_00070528-exon-scaffold_56-1575043694:550999..551188TCONS_00070528-exon-scaffold_56-1575043694:550999..551188Clytia hemisphaericaexon
TCONS_00070528-exon-scaffold_56-1575043694:549968..550102TCONS_00070528-exon-scaffold_56-1575043694:549968..550102Clytia hemisphaericaexon
TCONS_00070528-exon-scaffold_56-1575043694:548791..548813TCONS_00070528-exon-scaffold_56-1575043694:548791..548813Clytia hemisphaericaexon
TCONS_00070528-exon-scaffold_56-1510915933:552907..553315TCONS_00070528-exon-scaffold_56-1510915933:552907..553315Clytia hemisphaericaexon
TCONS_00070528-exon-scaffold_56-1510915933:551717..551850TCONS_00070528-exon-scaffold_56-1510915933:551717..551850Clytia hemisphaericaexon
TCONS_00070528-exon-scaffold_56-1510915933:550999..551188TCONS_00070528-exon-scaffold_56-1510915933:550999..551188Clytia hemisphaericaexon
TCONS_00070528-exon-scaffold_56-1510915933:549968..550102TCONS_00070528-exon-scaffold_56-1510915933:549968..550102Clytia hemisphaericaexon
TCONS_00070528-exon-scaffold_56-1510915933:548791..548813TCONS_00070528-exon-scaffold_56-1510915933:548791..548813Clytia hemisphaericaexon
TCONS_00070528-exon-scaffold_56-1491911889:552907..553315TCONS_00070528-exon-scaffold_56-1491911889:552907..553315Clytia hemisphaericaexon
TCONS_00070528-exon-scaffold_56-1491911889:551717..551850TCONS_00070528-exon-scaffold_56-1491911889:551717..551850Clytia hemisphaericaexon
TCONS_00070528-exon-scaffold_56-1491911889:550999..551188TCONS_00070528-exon-scaffold_56-1491911889:550999..551188Clytia hemisphaericaexon
TCONS_00070528-exon-scaffold_56-1491911889:549968..550102TCONS_00070528-exon-scaffold_56-1491911889:549968..550102Clytia hemisphaericaexon
TCONS_00070528-exon-scaffold_56-1491911889:548791..548813TCONS_00070528-exon-scaffold_56-1491911889:548791..548813Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:548791..553315 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.364141	0.304367	0.0981665	0.172873	0.631369	0.406524	0.156054	0.104354	0.0292243	0.144796	0	0.0577419	2.2488	1.64077	0.285541	0.27473	0.18224	0.733817	0.165896	0.540082	0	0	0.139172	0.144603	0.242024	0.348924	0.0237767	0	0.0769844	0.0980437
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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