TCONS_00070524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070524
Unique NameTCONS_00070524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070524 ID=TCONS_00070524|Name=TCONS_00070524|organism=Clytia hemisphaerica|type=transcript|length=1811bp
ataaaaaatctttttggtaCAGAAAGTGTAGGATACCGGCTTGGAAGATT
ACCACAAGTTGCTGAATATTATTCGAATGTTAACAACAATGATGTTGGGA
GCTGGGTATATTGTCTTGCAGCAACTCAAATGTATCAAGAGCAAGAGAGG
GAAGACTATTGTGAGAATGTGGACGAAAACATCAAATGTGAATGGAGAAT
GGATGCTATCCAAACTATCGAAGCAACTGCCAGTGCACCCATCAATACCC
AGGTGGGGAGATCTTTACCTCGTCGTTCAGATAGGTTCTGCGAATACCGT
GACGACGGCAAATTCGTGTTCCCTTTGGATTGTAGGGGTTATTTCATTTG
CGATGGTGGGAAAGTCTCATTTGCTTCATGTCCTGAAGGTCAACATTTTC
ATCCGAAACTTCGAAGTTGTGTTGACAAGAAGCAAAGTTCATGTTTTTCA
AAGATGCCGGTCCAATCAgATATGGTGGTTACATATTTGCCAACAGCAAA
AAATTCTAAGCCGCGAGACGTAATAAAAACGTTACACAAACTATGGACGG
TCAATATTCATCTCAAACCTCGTGGCATTTCAACATTTAGAGGCTACACA
AGTGCTTTTTACGCAGTTGCTCCCATGGAAGGAGTTTTTCGGAGTGTGAA
ATATCGAACGCCAAGTATTCTTTTTGNTGGAAGGAGTTTTTCGGAATGTG
AAATATCGAACGCCAAGTATTCTTTTTGAAAGCGGTACAACTAGATTACA
GGTTTGCGGAGTCTTGAACTATCCAAGCCCATCCACCTGTCAAACAATAT
CAACACCACTACCTCTCAACAAATTCACCAGAgtacaaattcaacaaatc
cCAAATGGAGCTGACTCCAAATTCATCGTCAAATACAATAGGACAACCAT
GTGGATCGGAAAGCCGACAAATTTGCGAGCATTTCACAATGTTCTTGTCT
ATCATTGGGACAATAGTGAGTCAGGAATAAGACCTGCTAATGCTGAAACT
AAACGTTGCAAGTTTTACTCTGGAATCAGTCAAGGTCACCTTATTGAAAC
TATTAAGAAACTATATAACACATGGACACTCCAAATCACCTTGCTCCCTC
TTGGTATACGAGATAGTGACTCAAACATACTTCACGTCACGCAATACTTG
AACAGCGCGAGGGAAGGATTGTTGAAGTTGGATTTTATGGACGGCACTAG
CCATTTGAGAATCTGTTCGCCTTCCATTACGTCAAAATCGTCAAATGGTT
GTATCATACTGTTTCGTCCGTTGGAAATCAATAAGTTGGTCACAATAACG
ATTCAAAGAAGACAAACAACAAAAGGCGGATATGATTTAGTGATTACCCT
TACTGGGTCACAGTTTTTTTCGATCAGATTCAATGATGCTGTATCTCGAG
TATTGGAAGATGTCAATGTATACGTGTCTGATTCGTGGATGCCATCTGCA
AATGCTGTACTGGATGCCTATCAATTTAGCACGAAAATAAAATGATTTAA
CCACCTGCAAATATCTTCATTGACCTtgaggggattaattttcgcgagga
ctTATATTTTCACGaggcaaatttttttcaaaaNTTGGGAGTAATTTTCG
CGAggcaaattttttataaaaattatttaattttcgcAGGACTTATTTTC
GCTACATTACTACTATTATTACTACGTTTCGCGAGTTTCGCGAGAAGCGG
CCTTTTTTCGAAAACTCGAACCTGAAGACTAAAAGATCGAACAGTAGACT
CATAGAAAACTTCAAAACATTTgagattttgtcaaaaaatagaAACTGTT
GTGCTTCTTTC
Run BLAST on NCBI

transcript from alignment at scaffold_56:542404..548429-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070524 ID=TCONS_00070524|Name=TCONS_00070524|organism=Clytia hemisphaerica|type=transcript|length=6026bp|location=Sequence derived from alignment at scaffold_56:542404..548429- (Clytia hemisphaerica)
ATAAAAAATCTTTTTGGTACAGAAAGTGTAGGATACCGGCTTGGAAGATT
ACCACAAGTTGCTGAATATTATTCGAATGTTAACAACAATGATGTTGGGA
GCTGGGTATATTGTCTTGCAGCAACTCAAAGTTAGTAATTGAAGAAAGGG
CTACTTAGACTACACAATATATTGACGAATAACTATATTTGACAATATCG
TTTTCGGACCGTAATGTAAGAAGTAAACAACAGGTGCTCTATTATCAAAA
GGAATTTTCTTTCTGTAAACAATCCCCCTGTATTGTTGAAAAATTGCAAA
TCAAGCTGACAATATATTGCGGACACCTTTTCAATATATTACCGGCACTC
AGCAATGTATCATCAATATATTGCCTGACAATATATTCTGTAGCGTATGT
AGCCCTTAACCCCCTTAACTATTAGTAAAGTTTCTCTGAAAACGATAAGG
TAAAATAATTCGAGATTTTGAAATATCTAAGCTAATTATCCAAGAGCATT
AAGCATTAGTAATGGCTTTTCAAGGAAAAACACTGCAGCCTTGCTAGAGA
GAACTATTTGCACCCCAAGGGGCGTATACTTAATGTCTTGATCATTGTGA
ACGAAGACCTCCCGGTGCTCTTGAAAGATCGGCCTTCAAAAGCACTGGGA
GGTCTTCTTTAAGGTAGCCCAGACCTCTTAGAGTGGGTCAGGGATTGTCT
TTGTTGGTGTATCATGTGTTGACAGTTAAAATATATTTGAGTTCCATAGA
GCTGTACAAAGGCCCGTCAAAAATATTGTTCCCAAGGGAGCGCTATTACT
GAAACTTGAAAATATCGAGAGTTCCAAAAGGGTTTGATTCTGAAATTTCC
GAGATAGCAGTGGGTAATTTAAGCTAGAGAAAAATTGTCTGACATTTGTT
AACAGTACTGACAAAAACTTTCCGTAGAAAACATTACGCGTTATGAATAT
CTAAAAAATCTGATTGTGTTTTTAGTGTATCAAGAGCAAGAGAGGGAAGA
CTATTGTGAGAATGTGGACGAAAACATCAAATGTGAATGGAGAATGGATG
CTATCCAAACTATCGAAGCAACTGCCAGTGCACCCATCAATACCCAGGTG
GGGAGATCTTTACCTCGTCGTTCAGATAGGTTCTGCGAATACCGTGACGA
CGGCAAATTCGTGTTCCCTTTGGATTGTAGGGGTTATTTCATTTGCGATG
GTGGGAAAGTCTCATTTGCTTCATGTCCTGAAGGTCAACATTTTCATCCG
AAACTTCGAAGTTGTGTTGACAAGAAGCAAAGTTCATGTTTTTCAAAGAT
GCCGGTCCAATCAGGTATTACCGAGTTTATGTATGTGTGTTTTTCTGCGA
TAGAGACCGTTAGTTTTTCATTTGTCTACATCCTGACTCATTGAGGACGA
CGGTAATTCAGCACTTTTACCATCCTCGATTTTGCGGGTCAGAACTGCGG
GTTCTTCCAAATCACTTCAGTCACTTTAACCGTCCTCAAAAGTGCAAATA
CATAAACTATTTCCCCAGTGTCGGATCTGGAGTGGGGTTTATGAGGGAGA
GTGCTTTTTAACCTACTTCTTATAAGGATAAGACCGTAGTACAGTGGTAG
AGCATCCGGCTACGGTTCGCAAGGTTGTGGGTTCAACCCCCAGCCGGGTC
ATACCAAAGATTCCCAAAATGGTACTTGATGCCTCTCTGCTTGATGCTCA
GCAACTAAGAGAAGGATCAAGAGTAAGTGGAGAAATCCAGGGAGAAAAAG
TGGCGCCCTCCCCTACCTTCGAGTAGATAGCTATCGAAAGAGGAGCCTTC
GGGTTGCCTCCGACTGCGGCCGCAGACTTACTTACTCCTTATAAGGTTAT
AAGGAAATGAAGGCCACATCCTTGAGGTCCGGCACTTTATCTTTTTATAA
ACTGTTTACTCTGGAATGAGTGCACGTTTCATAAAATAATGTCGGGAAAT
GGGTCTTCTAATACTCTTTCGAAAATGAAAATGCTAGTAATGATGATTTT
ATGAAAGGTTCTTTCCATAACTAGATTGGCATTGTGCTTATAAAATATTG
ATGGACCGATATGATTATTGTTTTTGTAAGAACTAATTTATTTTTTGGAC
GAAGTTACTAGTATTATTTCATTTTCTGTGCAAGGTCAAGAGTATGTAGT
ATTGAATGCATGTATATACTCATTTACTCAATAGATATGGTGGTTACATA
TTTGCCAACAGCAAAAAATTCTAAGCCGCGAGACGTAATAAAAACGTTAC
ACAAACTATGGACGGTCAATATTCATCTCAAACCTCGTGGCATTTCAACA
TTTAGAGGCTACACAAGTGCTTTTTACGCAGTTGCTCCCATGGAAGGAGT
TTTTCGGAGTGTGAAATATCGAACGCCAAGTATTCTTTTTGNTGGAAGGA
GTTTTTCGGAATGTGAAATATCGAACGCCAAGTATTCTTTTTGAAAGCGG
TACAACTAGATTACAGGTATATTACCCTTCCCCATGGCGTTCTAAATTCA
AGACCTAGAAAGCTTTGACGGAAAAATGGGTGTGAATGTTAGGTTTTTTG
AAAACAAATTGACGTCAACACTGCAATGACATCATTAATTAGGTCCACCG
GATTTTGACGTCAAAGCACGCTTGCTAGGCCAAAACGATTTTTTTCTGAA
TTGTTTGCGTTATTTCCACGGCTTTTGGTCTAGATTTGAAAATCTTGGAT
GGGAAATGAAGCCAGGAATACACAAGAAGCAATGATAGACTTGTTTGAGT
TACATGTCCAAGTGAATTATGAGAAATCAATGTTTTCTAATATCCACCTA
TAATTATACTAGCAGAAAGGTTTGTGATTAAGTATTTCAACCCCGCAACT
TTCTTTAAATTCGTTTTTAGGTTTGCGGAGTCTTGAACTATCCAAGCCCA
TCCACCTGTCAAACAATATCAACACCACTACCTCTCAACAAATTCACCAG
AGTACAAATTCAACAAATCCCAAATGGAGCTGACTCCAAATTCATCGTCA
AATACAATAGGACAACCATGTGGATCGGAAAGCCGACAAATTTGCGAGCA
TTTCACAATGTTCTTGTCTATCATTGGGACAATAGTGAGTCAGGAATAAG
ACCTGCTAATGCTGAAACTAAACGTTGCAAGTTTTACTCTGGTATGTAAA
TATTCACGCTTTTTTATAGGATTATATTTTAGCGACCGTAGTGCAGTGGT
AGAGCATCCTGCCACGGTGCGCAAGGTTGTGGGTTCAACCCTCAGCCGGG
TCATACCAAAGATTTCTAAAATGGTACTTGATGTCTCCCTGCTTGATGCT
CAGCAATTAAGAGAAGGGTCAAGGGTAAATGGAGCAATCCAGGCAGAAAA
AGTGGCGCCCTCCCCTACCTTTGGGTAGATAGCTATCGAAAGAGGAGCCT
TCGGGTCGCCTCCGACTGCGGTCGCAGACTTACTTTACTTTATACGAATA
CTCATGATGAATTTGGCCGAAAAATTAAGAATATGATAAGAATATCACCA
TCATGAAATTTAGCAACAGAACCTAAGACTGTCATTTTTTAGAGCAATTT
TAACTGTAAATTACTCCCCAGTAAGGATCAAAACCTTTCATAAAACTGCC
ATTTTATGCTTCACGTGTGTATTACATGTTAAATTCAAGTATGATTTCGA
TCCTAGCCTAAGAATACCGTAAGAATATTTTGGGATGATTTTCCCCAAAA
AGTTAAGAATATCCATCATGAAATGAATAAACACCATTCTTATGGAAAAA
GCGTGTAATAGATTCTAGCTGTGATCACTGTCCTTTATATATCCCTGGTG
GGCAAAAAAGTATGTGAAGAATTTTATAGACAATGAATGAAATGTCTCAA
ACAATGAAAAGCTAATGACGGACTAATTTTTGTGGTTTAAGTATCACATG
AGAAATATCTAGTGAAAGTGCTTATGACGAGGTTTCCAGCGCAACTAACA
AAAGAGAAATATAATTTCAATGGCACTAATTACTCTGCAGACGTCAGACA
TGATGTCTAACCTCCGTTCAACAAGTTTTCACTACACTACACTACACTTA
AGGCTTGGAGACACGAGAAGTTTTTTTCGCGTTGGTGCAATGCAACATGC
TCAATCCCACCAACATAAAACGCTTTCTCGTGTCTCCACCCCATTTTTCT
TTTTAACATTTGTGCTTCTCTCCCCGGGGGGGGGGGGCACTCGATTTCGA
AACGACGCTATGTGCCGTGCAAAATCTGCTTTTCAAAATCGTACCCTTAC
AGTGCAGTTCAATATGGCTGAAAAGGTACCATTTCAGTGCATTTTCTCTT
ACGATTTACCCAACCCATATAGTGCACTATATTTCTCAGCTGTAAATCTG
CGTGAAAGAAGAAGCTTGGGAAACTTTCTGAGAAAAACTTATTCTTGTCA
GCTGTAATTATCAGACAATAGAAACTTTTCAAACAAACGAGAAGTAAAAA
CCATTCTTTTTAACAATTATTTTGAATTTGTTTTAAAATTCGAATCTTGC
AGTGTAATCTCAAAGAAACACACCCTTACAGTGCATTTTGGGATGCTGAA
AAACCCAACCCTTAAGCGCGCCACATGACGTAGGCCAGATCATATGAGTG
CCCCCCTCCGCGGGCTCTCTCACCTTTGTTCCTGGGACAATGGAGCAAAA
TTGATTCGTGTCCCCAAGTCTTTATACAAACGCCTGATTGCAAACAAACT
TCGTTGCGGCTCGTTTTATCGCATCCAATCAGATTGTAGTATTTTCTCTC
ACAATAACAAAGAGAAAAAGTTTGCCATTTTGAAGATGTTGTTATTTTTG
CCTTTGATAACAAAATATTTTTATTGCTTTGGGAATACGAAAAGTCTTCG
GCAAAGACGATCATGTTTTTACCGAGTTTGTTTGTAACTAAGCTAATAGT
ATAGATATTTTTAAAGTCAAAATTATACTATTTACTTAAAACCTTGGCTA
TACAATTTTAGTCTGTACTGACCATATTTCTTGCCCAACCTGTAGTTAAG
TTCTTTTAGGTCTTCTAGAAATTAACTAAAGGGGGCAAAAAGATAAGCGA
GGTTGGGTTACTTTAATAATAAGATATTTACTTTTAAGATTTTCATTAAA
AGAAACAGTACTTTTTCTTAACCTACGCTGTGAGCTGGGGTCCTAGTGGG
TCTGTGACACAGGGGTGTATTAGAAAAATGAGTATATGTTACGTAAAATT
TGTACAAGTTCAATTTAATTGCTTTTCCATTTTGTAGGAATCAGTCAAGG
TCACCTTATTGAAACTATTAAGAAACTATATAACACATGGACACTCCAAA
TCACCTTGCTCCCTCTTGGTATACGAGATAGTGACTCAAACATACTTCAC
GTCACGCAATACTTGAACAGCGCGAGGGAAGGATTGTTGAAGTTGGATTT
TATGGACGGCACTAGCCATTTGAGAATCTGTTCGCCTTCCATTACGTCAA
AATCGTCAAATGGTTGTATCATACTGTTTCGTCCGTTGGAAATCAATAAG
TTGGTCACAATAACGATTCAAAGAAGACAAACAACAAAAGGCGGATATGA
TTTAGTGATTACCCTTACTGGGTCACAGTTTTTTTCGATCAGATTCAATG
ATGCTGTATCTCGAGTATTGGAAGATGTCAATGTATACGTGTCTGATTCG
TGGATGCCATCTGCAAATGCTGTACTGGATGCCTATCAATTTAGCACGAA
AATAAAATGATTTAACCACCTGCAAATATCTTCATTGACCTTGAGGGGAT
TAATTTTCGCGAGGACTTATATTTTCACGAGGCAAATTTTTTTCAAAANT
TGGGAGTAATTTTCGCGAGGCAAATTTTTTATAAAAATTATTTAATTTTC
GCAGGACTTATTTTCGCTACATTACTACTATTATTACTACGTTTCGCGAG
TTTCGCGAGAAGCGGCCTTTTTTCGAAAACTCGAACCTGAAGACTAAAAG
ATCGAACAGTAGACTCATAGAAAACTTCAAAACATTTGAGATTTTGTCAA
AAAATAGAAACTGTTGTGCTTCTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043900XLOC_043900Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070524-exon-scaffold_56-1575043694:548300..548429TCONS_00070524-exon-scaffold_56-1575043694:548300..548429Clytia hemisphaericaexon
TCONS_00070524-exon-scaffold_56-1575043694:547116..547454TCONS_00070524-exon-scaffold_56-1575043694:547116..547454Clytia hemisphaericaexon
TCONS_00070524-exon-scaffold_56-1575043694:545964..546245TCONS_00070524-exon-scaffold_56-1575043694:545964..546245Clytia hemisphaericaexon
TCONS_00070524-exon-scaffold_56-1575043694:545289..545559TCONS_00070524-exon-scaffold_56-1575043694:545289..545559Clytia hemisphaericaexon
TCONS_00070524-exon-scaffold_56-1575043694:542404..543192TCONS_00070524-exon-scaffold_56-1575043694:542404..543192Clytia hemisphaericaexon
TCONS_00070524-exon-scaffold_56-1510915933:548300..548429TCONS_00070524-exon-scaffold_56-1510915933:548300..548429Clytia hemisphaericaexon
TCONS_00070524-exon-scaffold_56-1510915933:547116..547454TCONS_00070524-exon-scaffold_56-1510915933:547116..547454Clytia hemisphaericaexon
TCONS_00070524-exon-scaffold_56-1510915933:545964..546245TCONS_00070524-exon-scaffold_56-1510915933:545964..546245Clytia hemisphaericaexon
TCONS_00070524-exon-scaffold_56-1510915933:545289..545559TCONS_00070524-exon-scaffold_56-1510915933:545289..545559Clytia hemisphaericaexon
TCONS_00070524-exon-scaffold_56-1510915933:542404..543192TCONS_00070524-exon-scaffold_56-1510915933:542404..543192Clytia hemisphaericaexon
TCONS_00070524-exon-scaffold_56-1491911889:548300..548429TCONS_00070524-exon-scaffold_56-1491911889:548300..548429Clytia hemisphaericaexon
TCONS_00070524-exon-scaffold_56-1491911889:547116..547454TCONS_00070524-exon-scaffold_56-1491911889:547116..547454Clytia hemisphaericaexon
TCONS_00070524-exon-scaffold_56-1491911889:545964..546245TCONS_00070524-exon-scaffold_56-1491911889:545964..546245Clytia hemisphaericaexon
TCONS_00070524-exon-scaffold_56-1491911889:545289..545559TCONS_00070524-exon-scaffold_56-1491911889:545289..545559Clytia hemisphaericaexon
TCONS_00070524-exon-scaffold_56-1491911889:542404..543192TCONS_00070524-exon-scaffold_56-1491911889:542404..543192Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:542404..548429 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.96659	0.713931	0.359003	0.0558306	1.14062	0.512718	0.138991	0.293802	0.0942708	0.489886	0.134621	0.108929	5.3545	4.38179	0.908666	1.50186	0.791415	2.56663	0.557885	1.66067	0	0.0375461	0.403375	0.347681	0.61163	0.455614	0.0303664	0	0.193994	0.347279
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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