TCONS_00070518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070518
Unique NameTCONS_00070518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070518 ID=TCONS_00070518|Name=TCONS_00070518|organism=Clytia hemisphaerica|type=transcript|length=568bp
CTGTTATTAGTGTCCGGCAAATCAATTTGGTGCCATTCAATCTCAAAGAG
AAAGACAAAATGCATGGCATGCAAATATCGAACCACTCCTCTTATTCTCA
TCAACAACATTCCAACACGACCAACAACAATCAACACCATCATCAACAAA
CCTCCTCATATTCAACAAAATCCTCTTATCGCTCAACAAATTCTTCACAT
GGTGCAAGTAGAAATGGTGgTTCTCGACAAATAATTCAACCACCCGaaga
attttatgattttggttCGGTAAAGTATTCATCTGGTCATTCCACTTTGG
ATAATGGTTCGGTAAAATCCAGTCGTTCGTACCGAGATGATAGACTGGAT
GAAGAATACATGGATTCATTCAACGAGAATGCTTCTTATGTCAGTAACCT
CTCACAACAGAGTGAACCTGTCCACCGTTACACGTCTAATGGCTATTCAA
CCAAAGCAACCAATCAGAACTCTCGTTCCAGGTCCCTACCACGTGCACGG
ACCAATGGGTATGCTTCACACTCTCAAATGAATGACGAGACTTACGATGA
AGAGCTCTCTCGGtacat
Run BLAST on NCBI

transcript from alignment at scaffold_56:416068..423923-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070518 ID=TCONS_00070518|Name=TCONS_00070518|organism=Clytia hemisphaerica|type=transcript|length=7856bp|location=Sequence derived from alignment at scaffold_56:416068..423923- (Clytia hemisphaerica)
CTGTTATTAGTGTCCGGCAAATCAATTTGGTGTTAGTATTTTATTTGCTT
TTCTTTTTTAGGGGTAGTTTTTGCATAAGCTTTTCAAGACGCTAATTCGA
ACTTGCAAATTAAATTTAATTTCTTTCCATTTTCAAGAGATTGTGCAGTC
AACTCTCTCTATTATTCAAATCTTTCTGTAATTCGAATTAAAATATTAGT
CCCATTAGCTCGAAAGTGGTTTAAATCACTCTCTGTAATTTGAATTTTTC
TCTAGTTTGAATAAAATTTTTATTCCCTTGAAGATCGGATTAGAGAGAGA
GTCAACTGAATTTCATTTCTTTCTCCTTGAGGCAAATCAATTAATTTCGA
ATTAGCGAGAACCAAAAATTCGAAAGTTGTTTACTTTCCAGCTGTATCTT
CATTACTTTTTCAGGCCATTCAATCTCAAAGAGAAAGACAAAATGCATGG
TAAGAATTGAATCGCTTTTTAAAAATTTAAAATTCAAAATCATTAGTAAT
TAGTGTTCCTGTTTCAAATCGATTTGTATATGTAATCACATGATAACGAG
TGCAATTCGAATATAATTGCAAGAGTGATTTTTTTGCTATTAATTTTCCG
AGTCCGAAAGGACGAGGAAAATTCGAAACAAAAAAATCACGAGTGCAATT
TTCGAATTGTACGAGGTGGTGGATTGTTACGTGGTGGTAACAATTCCTAG
TTTTTCGAACCATTTTGAGCCTTAAGTTCCTTATAAACGTGTTCCTTATA
AAAAATGTGTAGTTTTGACGATACAGCATCTCAAAGATGGGCTATTAAGC
GAAAATTGACCCCTAAAAATCATGAGCTCTGGCAAGGAGCAGATTTTGAA
AGCCAATTAATTTTTATTCAAGTACATAAAGCTGATCTACAGTGGATTTC
AAGAACTTTTTGCAGGAAATCAGAAAAATCAAATTGAGTTTCCAAAATTT
TCCCAGAAAATCTCTAGCACCTTTTGGAAGCACTTTTAGCTGTCTGCTGA
TGGTCCTTGTGACTTATTTGAAGCAAACTTTAGACCCGGAGTGATTTACT
GGTGGGTTTTGACCACATAAATAACATTTTCAGGATTTTTAACTTTGCAT
AATCGTCAAAAATGGCCGAAAAAATTGCTATTTCGGCAGATCTGGAGCAA
AATTCAAGATAGCGTATCTTTTTGCAGTGACAACAAATTTTCAGGCAAAC
TTTCAGTATGGCTTTCCTTAATATAGGTCTAGTTTAAAGCCTCTCAGTGG
GTTTTGGATGGNAAAAAGATGTAAGAAAAAACATTAAAATCAATTTTGTA
AACATTGGCGCTGCATTGAAGAGTGTGATTAACGATTAATTGCTCTCTAC
AGGATGCAATTAACGATTAATTGCTCTCTTTGAAGGCACGCCAAATGAGA
AAAAATAACTCATCGTGCGATTATGAGGGTAATCAAGATTCAGGCCTTTA
AAAGTTTTTTGTTTTAAAAACGATTTTTGTCCAAAAATATCCTGAAACCT
CCAAACTAAATCCCCACCTAAAAGTAGTTTTGGCTGATGAAAACACGAAA
CCTTAATTTTTTGTGACAATGTATATGACAAAAGATATTACATTTGCATC
GCTAGTGAAATGTTCTATCGTTATCGAGTTACCCAGTCTGCAACTATCAA
TATCTGCATTATTATAAAACAGACTCTATAAGATCATTTCAAATTCTAGG
CATGCAAATATCGAACCACTCCTCTTATTCTCATCAACAACATTCCAACA
CGACCAACAACAATCAACACCATCATCAACAAACCTCCTCATATTCAACA
AAATCCTCTTATCGCTCAACAAATTCTTCACATGGTGCAAGTAGAAATGG
TGGTAAGTTTCTTTTTTCTGAAAAATATGTACCGTGTAAACTGTGATTAA
GTGCGTCATATGAAATCGCACTATCTTTTCGGTCCTGTACCTAGACATAG
GAGCTAGAACCTAGGAGCCCTATGACCCATAGCGCTCTGTTTTTTGACCC
CGCCCGAATATCGTTATCCCACTTGCCTTGTTTTAAAATCATTGCGATTA
ACTCCCAGCGGATTTTATTAAAAGTACTTCCTATTCATGAAAGAATCATT
TAATGTCTCAAGGGACGCAATCACCATGGTAATTGTTTGAATACGAGGGT
TTGTGTTTTAGTATCCTTTACTGAATTCTCATAGTGATATGTTTGTAAAA
AATCTGTGTCGGGTTTGAAAAATCATATGAACGGTCGTCAGCCGCGATGA
AATTACGACAAAGTCCAAAAACGATCATTTTCAGCCATAACACTGTGAAA
ATTTCTCCAATCTTGTTCAAATTTACACAGGAATGGTGTTTTAGTATCCT
TTATTAAATTCTCATAGTGATATGTTTGTAAAATATCTGTGTCAGGTTTG
AAAAATCAAAAGGAACANGCGCTCTGTTTTTTGACCCCGCCCGAATATCG
TTATCCCACTTGCCTTGTTTTAAAATCATTGCGATTAACTCCCAGCGGAT
TTTATTAAAAGTACTTCCTATTCATGAAAGAATCATTTAATGTCTCAAGG
GACGCAATCACCATGGTAATTGTTTGAATACGAGGGTTTGTGTTTTAGTA
TCCTTTACTGAATTCTCATAGTGATATGTTTGTAAAAAATCTGTGTCGGG
TTTGAAAAATCATATGAACGGTCGTCAGCCGCGATGAAATTACGACAAAG
TCCAAAAACGATAATTTTCAGCCATAACACTGTGAAAATTTCTCCAATCT
TGTTCAAATTTACACAGGAATGGTGTTTTAGTATCCTTTATTAAATTCTC
ATAGTGATATGTTTGTAAAATATCTGTGTCGGGTTTGAAAAATCAAAAGG
AACAGTCGCCCAGTCAAAAAATGATGAATACAAAACAGGATCATTTTCAG
CCATACACATAACACCACAAAAACTGCTCAGATCGTTTTCAAATTTGCAC
CGTAATGTTGTAATTTTAGTATTCTCTTTCGAATTCCAATAGATGTGTGT
TTGAAAGTTTCATTCCATTAGGCTATTCCATTTTTAAACCATACAGGGGT
ATTGACGAACTTTTCCAGGGCGCAGGGGGTTCTGAGCCTTGGTTTTCCAA
GGGGTTCTTTCTTCCTTTTTCAGATTTTCCAAGGGGGTTATTGAAGGTTT
CCAGGGGGTTCTCTCTTTATAAACTGACATCAATAGTTGTTTTCCAGCCC
CTTTTTCACAAGATTTCACTTTCCAGAGGGGTCTACCCCCTAATTTCCAG
GGGATAACTTGTTATTCAAAATTTCCAGGGGGGTTAGTGAAAAAAGTTCG
TCAATACCCCTGTATAAATCTTTTTTGGAATAGCCCATTGTCAAGTTACA
GAGTTTTATGGTTTTGTGCGTCCATAAAACTAGCATAGAAGTTTATAGCC
ATATGCATAATGCAAGATTTAAGCATTCGAGCAGCTGACGATTCATGGCC
AAAATTTCTCCAAAGTCTTTCCATATTGTTATAGACCAGTATGCATCAAA
CTTCTCATAAATCATGTCCAAAACATCATGAATAATGATGAAAATGATCA
CTATCTTTCACTGAGATTTGCAGCTAATCGGCAGCCATCTTTTTCTAAAT
ACTTTCGCAATATTATCGAAATCCAGATAATGCGATTTTATTAAATCGGA
ATAGATCATCGGATTAGATAAACAAAAAAAAATGTCTTGACCTTGAACGT
CGTTGTTGTCGGAAGAGAGAATTAAAGGCTCCTAGGCCGGAGCAATTAGC
TGTAGATACTGGGTCTGTGTACAGACAAGTACAGCAAAGACTGGGCTAAA
ATGAAATTATAATGCAGCTTCCTTTTATTTAGGAAGATTGCCTCCAAAGG
AAGACTAGCGAACGTTCTATTACTTAGTTAAAGGGGCTTTAAATTGTGGT
AAAAGAAATCCTAGCTTGTAACTAGTTTATGAAGTTTGAAATTGCTTTTT
GCCATTTTGAAAAGTATCGACTCCCATTTTAAGTTTTGTGTTTTGTTTGT
TAGATTTCAGCTTCAGGATGATTTTCAGGACTTTTTTCAGGACTTTTTTT
TCATATCAGACACATATTTCATATCAGGATAGTGTCTGCCTATTGTTATG
TTATGCTATGCTGATATAAGCGAAACAATGTTTTTCTTTTCCTCTTTCTG
ACCAATCTTGTTCCACATATGTGTCAACCTAATGTGAAAAGCCTGTGAAT
TAAAATTCATGAGTAAGCAAACAATGTTTAAAAAGCAGGCCTTTTGTTTT
TTTACAGGTTCTCGACAAATAATTCAACCACCCGAAGAATTTTATGATTT
TGGTTCGGTAAAGTATTCATCTGGTCATTCCACTTTGGATAATGGTTCGG
TAAAATCCAGTCGTTCGTACCGAGATGATAGACTGGATGAAGGTTGGTTT
GATATTTTGTCGAGCAAATTTGTTGCCTTGGCTGAGACTGTAATCTTGCG
TAATGCACTATCACAGAAAGACCGTTCTCCGCCTACCGAAATGAAAACCA
TTGAGTTTAAAACCCCGAAGGGGCTAGAGTAGAAAAAATGAAGCTAATTA
ATTTCCCATCCAGAACGCCCGCGCGTGGTTTTTACACAANNNNNNNNNNN
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NNNNNNNNNNNNNNNNAGGTGGGAAAACGAGTTTCCTTCGAAACGGATTT
TCTGTAAAAAAAAAGGGGGGATAAGATTTCATTACAAAAGGGGGGGATGG
GTATATAGGGGGGGGGATGAAATAAACCTAGGGGGTTCATACCCCTCTGC
AAACTGAATGGTAGATCCAAATTTAAAAAATTCGACTTTTTCCTCTTTAT
CATATCAATAAGCGACTTTCATGCCATATTCATAGTGCTATTTTAAATTC
ATAAGGGATGACTTTTTCAACTTCTTCAGCTAAAAATATCTGCAAAAAAA
CTTGCACAAAAAAAATTTCACAAAAACAAACACAAAAAACAATAGGAAGT
ATCTGACCTGATATGAAACAAGAAGCCCGTTAGGCGTGAAGGCCCAGCAA
AAGCGAAATTTACGCGATTTTCGCGAATTTCGAGATTTCCAAAAATTCCA
AAAAATGTTTAACAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAAAAA
TAAGTCGACAAGGATAATTCTCCCTTTCTTCATTTCTTAGAACAGGGAAG
TGAAAAAATAAACGAAACATAATGTACAGTAGTCAATCAAAAATTAATTG
AATGTTGAAAGCTCGAAACTTTCTACCTGAAGGTAAACAATCAAATTCAA
AATATCATTAAATTCAACTTCCATAAGAAACAACATCATTGAAGAAAAAA
GTTCAAATCTTGTTCAAATTTACACATGAGCTGCATTTTAGTCTCCATTT
ACCATATCCATACCGTAAGTTGGTCTAATATCGACATCCCTCGTCTAATT
CCGACACCCTTTTTAGAGAAAGGAATAATATGAAAGCTTGAATCACTGAT
TGAAAAAGGATTATTCCTCTCTGACCACTAAGCAAAGAAAAACAGTTTCA
ACCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAGCGCCGTTTCTACCAAAACGGACACACAGAAGGAAACACGGAAAAA
AAAATAGTGACACTCTCTTTAAAGGCCCACTCGCTAGCGCTGGGCCAATA
ATGTGTCCGGTATAAAACTTTTGAAGAATTATTATTTTCTAGAATACATG
GATTCATTCAACGAGAATGCTTCTTATGTCAGTAACCTCTCACAACAGAG
TGAACCTGTCCACCGTTACACGTCTAATGGCTATTCAACCAAAGCAACCA
ATCAGAACTCTCGTTCCAGGTCCCTACCACGTGCACGGACCAATGGGTAT
GCTTCACACTCTCAAATGAATGACGAGACTTACGATGAAGAGCTCTCTCG
GTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043898XLOC_043898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070518-exon-scaffold_56-1575043694:423893..423923TCONS_00070518-exon-scaffold_56-1575043694:423893..423923Clytia hemisphaericaexon
TCONS_00070518-exon-scaffold_56-1575043694:423475..423509TCONS_00070518-exon-scaffold_56-1575043694:423475..423509Clytia hemisphaericaexon
TCONS_00070518-exon-scaffold_56-1575043694:422072..422224TCONS_00070518-exon-scaffold_56-1575043694:422072..422224Clytia hemisphaericaexon
TCONS_00070518-exon-scaffold_56-1575043694:419532..419666TCONS_00070518-exon-scaffold_56-1575043694:419532..419666Clytia hemisphaericaexon
TCONS_00070518-exon-scaffold_56-1575043694:416068..416281TCONS_00070518-exon-scaffold_56-1575043694:416068..416281Clytia hemisphaericaexon
TCONS_00070518-exon-scaffold_56-1510915933:423893..423923TCONS_00070518-exon-scaffold_56-1510915933:423893..423923Clytia hemisphaericaexon
TCONS_00070518-exon-scaffold_56-1510915933:423475..423509TCONS_00070518-exon-scaffold_56-1510915933:423475..423509Clytia hemisphaericaexon
TCONS_00070518-exon-scaffold_56-1510915933:422072..422224TCONS_00070518-exon-scaffold_56-1510915933:422072..422224Clytia hemisphaericaexon
TCONS_00070518-exon-scaffold_56-1510915933:419532..419666TCONS_00070518-exon-scaffold_56-1510915933:419532..419666Clytia hemisphaericaexon
TCONS_00070518-exon-scaffold_56-1510915933:416068..416281TCONS_00070518-exon-scaffold_56-1510915933:416068..416281Clytia hemisphaericaexon
TCONS_00070518-exon-scaffold_56-1491911889:423893..423923TCONS_00070518-exon-scaffold_56-1491911889:423893..423923Clytia hemisphaericaexon
TCONS_00070518-exon-scaffold_56-1491911889:423475..423509TCONS_00070518-exon-scaffold_56-1491911889:423475..423509Clytia hemisphaericaexon
TCONS_00070518-exon-scaffold_56-1491911889:422072..422224TCONS_00070518-exon-scaffold_56-1491911889:422072..422224Clytia hemisphaericaexon
TCONS_00070518-exon-scaffold_56-1491911889:419532..419666TCONS_00070518-exon-scaffold_56-1491911889:419532..419666Clytia hemisphaericaexon
TCONS_00070518-exon-scaffold_56-1491911889:416068..416281TCONS_00070518-exon-scaffold_56-1491911889:416068..416281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:416068..423923 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.52595	0.85358	0	1.35105	5.75143	4.96316	3.35165	0	0	4.52448	0	0	6.36834	0	0.591106	0	8.12595	12.1167	8.90814	2.28967	8.19788	12.9542	2.17458	5.65744	0	6.4519	5.5399	4.6359	1.93694	3.0463
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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