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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070517 ID=TCONS_00070517|Name=TCONS_00070517|organism=Clytia hemisphaerica|type=transcript|length=4078bpRun BLAST on NCBI protein sequence of TCONS_00070517-protein >TCONS_00070517-protein ID=TCONS_00070517-protein|Name=TCONS_00070517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=950bp MTTGGGPQLNSTSHTEFEHYHQQQQQRLGGGRSMSRDQNMTSTMTSSSTHRun BLAST on NCBI transcript from alignment at scaffold_56:403819..415765- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070517 ID=TCONS_00070517|Name=TCONS_00070517|organism=Clytia hemisphaerica|type=transcript|length=11947bp|location=Sequence derived from alignment at scaffold_56:403819..415765- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_56:403819..415765- >TCONS_00070517 ID=TCONS_00070517|Name=TCONS_00070517|organism=Clytia hemisphaerica|type=CDS|length=39942bp|location=Sequence derived from alignment at scaffold_56:403819..415765- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070517 vs. Swiss-Prot (Human)
Match: CTND2 (Catenin delta-2 OS=Homo sapiens GN=CTNND2 PE=1 SV=3) HSP 1 Score: 320.087 bits (819), Expect = 2.637e-90 Identity = 202/538 (37.55%), Postives = 300/538 (55.76%), Query Frame = 3
Query: 1284 LKANTAGYIMHLTFNDDEAKQKIREFDIIPLLVKLLDHEDEDCQRNAAGALRNLSYGKFVNDNKIAIYECGGIEACVRLLYRTSWIEVRQHVTGILCNLSSYESLKLHVLREAMEAVALLIIVPLSGWEKDHAMMGRRPGIISWSLLLRNATGILRNVSSAGHEARTTIRFRIEGLVDACLWILRAAVGSEATEDINNKIIENIMCTLRNISYKIDVEIDRNVYTDAVRVPVKHSNANSPQMSPSRDHRSTNQ-DGDSDSVDNGNHDXXXXXXXXRLIPRDASKTGCLGMKKKPFKKRMENRGTLPLQPSKKPPPEQWAYHPPHANDKKYTPMGVELLWQPNTVTIYIYVITNSTNPLTLESAAAAVHNLTGGKWNWAALLRVHVRLNRGLPPLHDLLSVDQEYVVRSVAYALRNLAIDHTNKWSIGWFAPEGLVQVLPSV-KAYETDTKP-SEYTICAILSVLQALVYKDYNNSKKVKEADGIRKLVALTREEPREQKNDQLRSYSNKVIIDANRVLLYMWEFKDCRESIKKLLWSH 2888
+++N A Y+ HL F D++ K +IR I LLV LLDH + R+A GALRNL YGK +DNKIA+ CGGI A VRLL +T+ +E+R+ VTG+L NLSS ++LK+ ++++A+ + +I+P SGWE R+ + S S +LRNATG LRNVSSAG EAR +R +GL DA L+++++A+GS +I++K +EN +C LRN+SY++ E + H T++ DG NG +DA +GC G KKK K + + G PL +P P G+++LW P+ V Y+ +++ +NP TLE AA A+ NL G W W+ +R VR +GLP L +LL +D + VV +VA ALRN+A+D NK IG +A LV LP + T +K S+ T+ A+ L ++ K+ N+K +++A GI KLV +++ K D+ +S KV+ A++VL MW+++D R KK WS
Sbjct: 566 VQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKNCGGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDALAVLTNAVIIPHSGWENSPLQDDRKIQLHS-SQVLRNATGCLRNVSSAGEEARRRMR-ECDGLTDALLYVIQSALGS---SEIDSKTVENCVCILRNLSYRLAAETSQG------------------------QHMGTDELDGLLCGEANG---------------KDAESSGCWGKKKKKKKSQDQWDGVGPLPDCAEP------------------PKGIQMLWHPSIVKPYLTLLSECSNPDTLEGAAGALQNLAAGSWKWSVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNNTASKAMSDDTVTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKS-----KGDK---HSPKVVKAASQVLNSMWQYRDLRSLYKKDGWSQ 1033 The following BLAST results are available for this feature:
BLAST of TCONS_00070517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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