TCONS_00070513 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070513
Unique NameTCONS_00070513
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2049

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070513 ID=TCONS_00070513|Name=TCONS_00070513|organism=Clytia hemisphaerica|type=transcript|length=2049bp
CAACAACATCAACGACAACCACTTTACCTACtactacaacaacaacgacc
accccaacCACAactacgacaacgaccaccccaaCTACAACCACcacaac
gaccacccctactACTACAACAACAACTACTACTCCGACCACAACTACGA
CACCGACCACAactacgacaacgaccacccctacaACTACCACGACCACC
CCAACTACTACAACGACCACGACCACCCCTACTATTAAAACGACTACGAC
CACCCCTACTACTACAACAACAACTACTACCCCAACCACAactacgacaa
cgaccacccctacaACCACTTCAACGACCACGACCACCCCAACCACAAca
TCAAAACCAGATACTACACCTTGTGCAACACCTGCCCCAGTTTGTCCAGG
CATCGACAAATGCAGTGTGTGTTGTCAACCGCAACAAACTTACATCAATA
TCTTCCAAGCTGGATCGGGACCAAATTACTTGATGCAAGGCATGAGACTT
TCCCAAAACACGAACACAAACCCAGGATTTTTAAACGGCGTTGTTTTCCC
AAAAATGGAACCCTGGTTAAATTTGACTTCAGACCAAGCTATAAGTAATG
CTGATATCGTTGGTATTATTGAGAAACGTTTGAATGGCCAATCTGCTTTG
TTAGAAGCCATCAAAAAAGCTTTGGCTGTTGGAAATAACAAAAGAGCAAG
AAGATCATTGAGCAAAGATCCGTTCGAAGAAATCCTACCAATCGTAGTAG
CGTCTGGCTGTCATTTGTTCATCCAACAATTAAAGCAAAACAATCTCTGG
AAGCAGGTGATGAACTCTATGACCACACATCATAAACCATTGACACTGTT
CTGCCCACAAGACATTGCTATTGATAATTCACAATTGGCGCCCGACGTGT
TATTGCACCATTTGACGAAAAAGTATGGCCGAAATGGAATGATGTTTAAA
TCATTGATGGATGGAAGTAAGATGATGCTACAAGCTGCTCCAACGAAATC
TCCCGAAGGCAAAACTATGTTCAAGATCGAAGAGGCCAACATCAAAATCT
GTTTATCCCAAGGAGTCATAAATATTTGTGTGATCGACAAAGTTCTTCAG
CCAATCACTTTTACTGTGAAAGAAATCTTGGAGAGcaacaaaaatctttc
aatcatGAATGAATTAGTTCATAAAAGTCCTCTCCAGAAGCTGCTACATC
GCAATCGATTTGTAAATCGTGTGTGTTTCACTGACAAAATCTGTTTACCA
ATTGTCGGCAAATTAAGAAAGCATTTCAATGATTTGTTGAAAGCTAAGCA
ATACACCATTCAACTTGTTGAAAATAATTACTTCAACAATATGAATCCGA
AGCTGATGTTATCATTGAggcaaaacaaagaaatcagAGAAGAATTTTTG
TTACAGCATATTTTCCTTGGCATCTTACAACACAACGATCAAGACAACAA
CTCAAGGTTGATCGCTACCTCGGCGCAACAACGACAACCCGTTTCGGAAT
GGTTATGGAGTGATGGCAAACCGATTGTCTCGAAATCAGAAAAATCGGTT
TTTGTCATCGACCGTCAAGTTAGGGTTAAAGAAGGACTGGTTCAAGTTTT
AAGAAGACTCGAGTAAAGCCCTAGTTTCAATGCATCCAATAATGAAATAA
GTCTTTGGAAGGAAAATGAAATCGAAGATTTTAGAAATCATGAACTACGA
GAGGGAAGATTCGCTGGTGGAAAAAAAGACTTGAAATGAAACTAGAAATA
TGCAGACCtaaattaagaaaataaagatgtgTCCCCTGTTTTTGCGTTAT
TTTAATAACTACGTCCCTTATTGACTTATTCCCTTGGGTGTGGTTTCAAC
ATGGTGGCAAAAATTATTACTCGCTTTTTATAAACAGAATTAGATACTTA
TTAAACACCATATATTCATAATTCTTTTacagggctacatacactacaca
atattgtcaaatattgttcgtcaatatattgtgtagtctaagtagccctt
agtgattttaatgttttataaATAGTTTTTAGATTATCGAATATTCACA
Run BLAST on NCBI

transcript from alignment at scaffold_56:236840..241465-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070513 ID=TCONS_00070513|Name=TCONS_00070513|organism=Clytia hemisphaerica|type=transcript|length=4626bp|location=Sequence derived from alignment at scaffold_56:236840..241465- (Clytia hemisphaerica)
CAACAACATCAACGACAACCACTTTACCTACTACTACAACAACAACGACC
ACCCCAACCACAACTACGACAACGACCACCCCAACTACAACCACCACAAC
GACCACCCCTACTACTACAACAACAACTACTACTCCGACCACAACTACGA
CACCGACCACAACTACGACAACGACCACCCCTACAACTACCACGACCACC
CCAACTACTACAACGACCACGACCACCCCTACTATTAAAACGACTACGAC
CACCCCTACTACTACAACAACAACTACTACCCCAACCACAACTACGACAA
CGACCACCCCTACAACCACTTCAACGACCACGACCACCCCAACCACAAGT
AAACATTTTTAATACCGATTCTTTATACAAGCAGTTTAAACTTAAGTCTT
AAGTCTTTTAGAGGTACTGTTAAAATACGAAGTTAAGATTATTTCACTCT
TAACCTTCTCTCCATTGTCGATCATCTAAAACGAGTCGAACATCTTATAA
TTCAGAAACAAGTGTTTTTTACTAACATTCTTCTTCTTCATTTTCAGCAT
CAAAACCAGATACTACACCTTGTGCAACACCTGCCCCAGTTTGTCCAGGT
ATGAGTAATTTTGTATGATAGGGAAATCCCTGTCTTTTTTATTCGATAAA
CGCTTTTATGTTATAGACAGTACACAGATTTCGAATAACATTTTTGTGTA
GCTTTTGCTTTGATCTCACGTAATTTGCACGAACAAAAAAATCAAATAAG
GAAAACAGAAATTGGCCGTGCGACAATTTTGGTTCTTTTTTCAATTTTGG
CATACTTTATGGGTCACTGTGTAACAACCAAAACATAAAATTGAAAAGAA
AATGGTATAGTCTAATTTCTTTTATTGAATTTAAAAATAGAAAAAACATT
TTTTAAATGAATAAAATTATTTTATAAGGCATTCACGCTTGTCTCTCGCT
GTGTTTACTTGATATTTTTCCGTGTGCGTAGTTTAATGCAAAACCCGTGT
ATTAATAAAAAAGATCTGTCAATTCTCCATAAAAATCAATTTTAAGCATC
TAAGTTACCATAATTAACATTGTATAGCCCCGTATAACAAACGTCTTGAG
AAATAAATTTACCAGTTTTTATATAAATGATCCCCTCCTTCTTTGCATCC
CCCAACCTTTAAAAATGCCTACCCCCAAGGATTTTGAACAAAAAATAGCT
AACAAATATATGTGAAATATCTTTAGAGAGAGAAAGCGAAATAATAAACT
TTTTCTTTTTGACTCAGACTACTCTAACAGAAAAATTCCTTTCATGATCT
ACAATATATATGTAAGCCCCCCCCCCCTTTTTGAACTACCCCTTCTTCAT
TATTTGGAAGGTGTCACCCCCCTCTTAAGAAAGGGGGGACGCACAGTAAG
GTTCAAAATAACCTTCTTTGAACACGGTCTTGTATTTGTACAATGCAATA
TGAAATACAGCATTTTTGTACGCATTTTTAGCCAATCAGATTGCTTATAT
TTTTCATGTTGATGATAATGAACGATATTTATAATATGTGTATAATTTGC
AGGCATCGACAAATGCAGTGTGTGTTGTCAACCGCAACAAACTTACATCA
ATATCTTCCAAGCTGGATCGGTAGGATTTTTGCTTTCCTTCATGTTGGAA
GCCCTTGAACTTTGCATATACTACCCTTTTTGTAAAGTGTCGTCTCGTTT
TTTGGCCCTATCCCGGTGTATCCTTCCGTACGTCCTTCCGTCCGTCCGTT
TGATGCAAGCTTTTCTCAGGATTGGCTCATTTGATTTTTTGCACAAAGAT
GCGTATTAGAAATGCCCAAAACATGGTTGAGCCTGATTGTGGAGAAAATT
TTTTCCGGTTGAAAGTGCCGGAAATATGCCGTTTCTTATTTTACTTCGTT
TTCTATTTCCATTCTTTTATTTATCATTAGGTAGGTCCAATATGCATTGT
GCTTGTTTAAACTTGTCATTATAGTGTTTAAAAGTGATTGCTGATATACC
CCTCTTCTTAACTCATCCTTTACAACTTTTAGGGACCAAATTACTTGATG
CAAGGCATGAGACTTTCCCAAAACACGAACACAAACCCAGGATTTTTAAA
CGGCGTTGTTTTCCCAAAAATGGAACCCTGGTTAAATTTGACTTCAGACC
AAGCTATAAGTAATGCTGATATCGTTGGTATTATTGAGGTAAGTTTTACT
TCACCCCTGTCTCACTTAGTTACCCGAACCAAGTTTATTATCCGATGGGA
GGGGGTGAAACGGGGTTTTCCAGGACATCTGTATTTTCTTGTTTCTTTCT
GTTTCTTGCATTCATTCTGGACTTTAAGCAGGAATCCACAACGAGTTCAT
TTTCACCCAACTATTGCATTTTTCATTTTTAACTTATTTATTTAACGGGG
TAAACAACCACGACGACATTGGCCTGTAAATAATTATTAATAATAATAAT
AATAATAATTATTATTGAATAATAATGTAGATTACAAGAAAGTGAGATCT
CAATTTTTTTATGATTTTATCTCATCCTAGAAACGTTTGAATGGCCAATC
TGCTTTGTTAGAAGCCATCAAAAAAGCTTTGGCTGTTGGAAATAACAAAA
GAGCAAGAAGATCATTGAGCAAAGGTGTGGTATTAAAGAATTTCCTTTAT
GAAAACAGACCATCAACTAAGCAAATCAAATCAGATTGTTGTTTGAATCT
TAGGCTATTTTTCTACTCTTGCCATTTTTCACGTAAACTTCATAATTCTA
CTGCATTACGTTTTTTTTCATAAGAACAAACTATATAAGAACATAAGGCT
TCGCTGGCCAAAATGTTAAGATCAAGTTAAGAACATTTTAAGGCTTTGTA
GACTCGAAAACACCCAATTCAAAATATCAAAGATATTCGCAAAATTGTCA
AAATAAGAACATGTTAAGAACTATTGGGCTTAGAACTCATAAGGTTAAAA
ACATCCGAAGGCTTCAAAAATTGGATGCTCTTATAAAAAAAACAACGCAT
TATTTGAGTATTATTTGACAAGCACAAAAAGGCTTGTTTTTTTCTTCACT
TTTATAAATTGTTGTGAATGTTTTATTTCAAGATCCGTTCGAAGAAATCC
TACCAATCGTAGTAGCGTCTGGCTGTCATTTGTTCATCCAACAATTAAAG
CAAAACAATCTCTGGAAGCAGGTGATGAACTCTATGACCACACATCATAA
ACCATTGACACTGTTCTGCCCACAAGACATTGCTATTGATAATTCACAAT
TGGCGCCCGACGTGTTATTGCACCATTTGACGAAAAAGTATGGCCGAAAT
GGAATGATGTTTAAATCATTGATGGATGGAAGTAAGATGATGCTACAAGC
TGCTCCAACGAAATCTCCCGAAGGCAAAGTAAGAACAGATCCTTTAATTT
TCCGCTTACTGGCAAGCCAAATTTAACTTTCCCTAGGTTTCTTCACTTCA
TTGTTTAGCTTCTTTTTAGTTAGTCTTATTTCTTTGCGTGTACATGAGGG
TTTAGGGTGCTCCCTGCCGTAATGCGGACGTAATACTGACGTGGGTGGTT
TTCTTTATTCTTAATTTTGTTATTGATTTATTCTTACTAGACTATGTTCA
AGATCGAAGAGGCCAACATCAAAATCTGTTTATCCCAAGGAGTCATAAAT
ATTTGTGTGATCGACAAAGTTCTTCAGCCAATCACTTTTACTGTGAAAGA
AATCTTGGAGAGCAACAAAAATCTTTCAATCATGAATGAATTAGTTCATA
AAAGTCCTCTCCAGAAGCTGCTACATCGCAATCGATTTGTAAATCGTGTG
TGTTTCACTGACAAAATCTGTTTACCAATTGTCGGCAAATTAAGAAAGCA
TTTCAATGATTTGTTGAAAGCTAAGCAATACACCATTCAACTTGTTGAAA
ATAATTACTTCAACAATATGAATCCGAAGCTGATGTTATCATTGAGGCAA
AACAAAGAAATCAGAGAAGAATTTTTGTTACAGCATATTTTCCTTGGCAT
CTTACAACACAACGATCAAGACAACAACTCAAGGTTGATCGCTACCTCGG
CGCAACAACGACAACCCGTTTCGGAATGGTTATGGAGTGATGGCAAACCG
ATTGTCTCGAAATCAGAAAAATCGGTTTTTGTCATCGACCGTCAAGTTAG
GGTTAAAGAAGGACTGGTTCAAGTTTTAAGAAGACTCGAGTAAAGCCCTA
GTTTCAATGCATCCAATAATGAAATAAGTCTTTGGAAGGAAAATGAAATC
GAAGATTTTAGAAATCATGAACTACGAGAGGGAAGATTCGCTGGTGGAAA
AAAAGACTTGAAATGAAACTAGAAATATGCAGACCTAAATTAAGAAAATA
AAGATGTGTCCCCTGTTTTTGCGTTATTTTAATAACTACGTCCCTTATTG
ACTTATTCCCTTGGGTGTGGTTTCAACATGGTGGCAAAAATTATTACTCG
CTTTTTATAAACAGAATTAGATACTTATTAAACACCATATATTCATAATT
CTTTTACAGGGCTACATACACTACACAATATTGTCAAATATTGTTCGTCA
ATATATTGTGTAGTCTAAGTAGCCCTTAGTGATTTTAATGTTTTATAAAT
AGTTTTTAGATTATCGAATATTCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043894XLOC_043894Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070513-exon-scaffold_56-1575043694:241118..241465TCONS_00070513-exon-scaffold_56-1575043694:241118..241465Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1575043694:240868..240918TCONS_00070513-exon-scaffold_56-1575043694:240868..240918Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1575043694:239846..239913TCONS_00070513-exon-scaffold_56-1575043694:239846..239913Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1575043694:239278..239433TCONS_00070513-exon-scaffold_56-1575043694:239278..239433Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1575043694:238842..238935TCONS_00070513-exon-scaffold_56-1575043694:238842..238935Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1575043694:238088..238383TCONS_00070513-exon-scaffold_56-1575043694:238088..238383Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1575043694:236840..237875TCONS_00070513-exon-scaffold_56-1575043694:236840..237875Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1510915933:241118..241465TCONS_00070513-exon-scaffold_56-1510915933:241118..241465Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1510915933:240868..240918TCONS_00070513-exon-scaffold_56-1510915933:240868..240918Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1510915933:239846..239913TCONS_00070513-exon-scaffold_56-1510915933:239846..239913Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1510915933:239278..239433TCONS_00070513-exon-scaffold_56-1510915933:239278..239433Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1510915933:238842..238935TCONS_00070513-exon-scaffold_56-1510915933:238842..238935Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1510915933:238088..238383TCONS_00070513-exon-scaffold_56-1510915933:238088..238383Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1510915933:236840..237875TCONS_00070513-exon-scaffold_56-1510915933:236840..237875Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1491911889:241118..241465TCONS_00070513-exon-scaffold_56-1491911889:241118..241465Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1491911889:240868..240918TCONS_00070513-exon-scaffold_56-1491911889:240868..240918Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1491911889:239846..239913TCONS_00070513-exon-scaffold_56-1491911889:239846..239913Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1491911889:239278..239433TCONS_00070513-exon-scaffold_56-1491911889:239278..239433Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1491911889:238842..238935TCONS_00070513-exon-scaffold_56-1491911889:238842..238935Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1491911889:238088..238383TCONS_00070513-exon-scaffold_56-1491911889:238088..238383Clytia hemisphaericaexon
TCONS_00070513-exon-scaffold_56-1491911889:236840..237875TCONS_00070513-exon-scaffold_56-1491911889:236840..237875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:236840..241465 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.28424	1.68892	0.66901	0.537157	0.837532	0.74966	2.10875	3.11665	2.71827	1.95693	2.13212	2.27886	21.969	16.1097	1.1635	2.06371	0.807324	0.993837	25.7281	15.5096	0.585519	0.769161	1.03362	0.912983	3.12484	1.8579	0.157322	0.448589	0.870848	1.35589
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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