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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070512 ID=TCONS_00070512|Name=TCONS_00070512|organism=Clytia hemisphaerica|type=transcript|length=318bp
CGAGAATCGATTTGGCTTTCCAATTAGCCAATGAGAAATTGTTTACGAAA
CAATCAGGCGAACGTGATGGAGTATCTAAGATTGTCTTCTTGATCACCGA
TGGTAATCAAAACCCCAAACAAAGCCCTGATGGAAAAGTCCAATACGACC
CTGTCGTTGCATCACAACCAATGGTTGATAGAGGAATCGACATTTTTGCC
ATCGCTGTTGGAGACAAAGCATCCGAAGCCGATTTATCAGCCATCACACG
TGATCCAGAACGTGTCTTCACTTCAAAGGATGCCGCCTCTTTGAAAAGCG
ATGTCTTCATGAAACAAG Run BLAST on NCBI protein sequence of TCONS_00070512-protein >TCONS_00070512-protein ID=TCONS_00070512-protein|Name=TCONS_00070512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
RIDLAFQLANEKLFTKQSGERDGVSKIVFLITDGNQNPKQSPDGKVQYDP
VVASQPMVDRGIDIFAIAVGDKASEADLSAITRDPERVFTSKDAASLKSD
VFMKQ Run BLAST on NCBI transcript from alignment at scaffold_56:214740..217875- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070512 ID=TCONS_00070512|Name=TCONS_00070512|organism=Clytia hemisphaerica|type=transcript|length=3136bp|location=Sequence derived from alignment at scaffold_56:214740..217875- (Clytia hemisphaerica)
CGAGAATCGATTTGGCTTTCCAATTAGCCAATGAGAAATTGTTTACGAAA
CAATCAGGTATGTGAACCTCGCTGTTTCTTTTTCAACCGTCAAGAGAAAC
GTTATTGTTATCAATGTCTACTTTAATAGGATAAATTTTGATGGGGATTT
TATTATGCGGTTGAGCTCATCAGCGAAATTTTAAGATTTTGCGGGAACTT
AATTTCGTGGATGACACTATTTGGAGACAATATTTTTATAATTTTGTACC
AAACTATGCATTTTGGTCGTTGAAATAAGCTTTCTTTGATACCAGTAAAC
ATTGTGACATTTTTTTATGTTTTGACAAAAAATATTTCGCAGATAAGGCC
TTTCCAAACTTCCACTCAGACTAAATTTCGCAGATGAGACCTGATGAGAC
CCGAATACGCGAAATCTGCTAAATTTAATCCCAGCGAAAAGATATCCCAT
TAAAGTAGCTCACCCACTTAACTAGACGTTAAATAGATTGGTATAACTTT
CAAATTAAAATCATGGTACAATGCTGGACAAAAGGTTCGTAGACTTCTGC
AATATTTGCAAAATACTTCAATATCGATCAAAAACAAGTTCTGGGTGCTT
TCCAAACCAAAGTCTTTCAAAGTCACCCACTGCAGTCTAACCGGAAGGGC
AATTCACAAGGGCTTGATTAACTGGCTTACACCAGTATCAAAAGGCTGAT
TTTTTGCTTGTGGTTTCCTCAAAAGCAATTCAAAAGCAATGCAACGACTT
CAAAGGTGTTTTTCTTAACTTCCATCCCCTTTCAGACACATTGAAGAGTC
ATTTTGCTCTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTCTATTTCTCATCATTTTTTACTGAAATTTCATTTGTC
TACAACCTTTTGTCCAGCATTGTACTAAGCTAGATAGGCAAACTTTTTCT
CTTCGTTATACAGTCAACTTTCTCTAAAATCGAATCTCCATTATTCGAAT
TTCCCTGTAGTTCGAACTTAAAGATTGGTCCCCTTGGTTGGAAAGTCGTT
TAATTACTAACCGTTTAATCTGAATGTTTCTATAAAATTGTTGGTCCCTT
GAACCCCTCCCAAATAAAAAAATTCGATGGAACAAAGTAAAAGTACTAAA
ATTGCAATTTTCGCCCGAGCTTTAAATTCTGAAAAATGTTAAAATACACA
AAAAATGCCAATATATTTTACGATTGCTCAGTCCTTAAATGACTCTTAGC
AAAACTTTGCGAAAGCCGATGATGTTCGCGAATGTGCTTCCAATGCGAAT
GTCGGGAGTTCAAATTATATTCCAGACCTTAGTTTAGTAGTTTGTTTTCA
AACTAACAAATATTGTTATAAGAAACAAGCCACCTTTGATAAGCATAAGA
CAGCGGTAGAATTTTAGATAATCTCTAAATCTTTATCCATCTTTTCAGGC
GAACGTGATGGAGTATCTAAGATTGTCTTCTTGATCACCGATGGTAATCA
AAACCCCAAACAAAGCCCTGATGGAAAAGTCCAATACGACCCTGTCGTTG
CATCACAACCAATGGTTGATAGAGGTATGATGATTTCATGATTCATGTTT
CGTGGAAGCTGTTGATATGTCTCCAAAAATACGGAAGAAAACTGTTAACA
TTGCTGGTCCCAGGGACCATACATGTGAAGAATTATGTGAACTACTGCTG
TTCCCGGGGGAGGGGAAAGTTTANGCTGGTCCCAGGGACCATATATGTGA
AGAATTATGTGAACTACTGCTGTTTCCAGGGGAGGGGAAAGTTTATTAAA
AAAACGACCATGTGTGCAGAACAGAATCAGGCCTTTGAAATCGGATCCTT
ACAGTTCAGAGAAATTTTAGCCAAATTTGGGCAAAAAATCGACCCTGTCG
GTGTAATTTCTTGAACATTTTGACCATTTTAAGGCAAAATATGGTCAGAG
TTTACACCCTTAGAGTGAACATTTTCTCATCTTTGTTCATTTCAACCCTT
ACGGTGCACTTTGTGAACTTGGANAGTGAACATTTTCTCATCTTTGTTCA
TTTCAACCCTTACGGTGCACTTTGTGAACTTGGAAAAAGGAACCTTAAGG
CCCCCCCAAGGTTATTGTCCTAGTTCTATGTAACCATCTTTCTTTTTCGC
CATCTTTAAAAACTAGATACTCTTGGTATCCATGACGTAATCTTTTAAAC
GGAAACACCCGAAAAACACTGGGCATTAAGATTAAACTGGTGGCAAACGC
CCGGCAATTTCAAGTGTTTCCGTATAAAAGATAACGTCGTGAATATCAAG
AATTACCATAAGTAAGATTTTATGTATTATTGTTCTTATATCTACCAATA
GGAATCGACATTTTTGCCATCGCTGTTGGAGACAAAGCATCCGAAGCCGA
TTTATCAGCCATCACACGTGATCCAGAACGTGTCTTCACTTCAAAGGATG
CCGCCTCTTTGAAAAGCGATGTCTTCATGAAACAAG Coding sequence (CDS) from alignment at scaffold_56:214740..217875- >TCONS_00070512 ID=TCONS_00070512|Name=TCONS_00070512|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at scaffold_56:214740..217875- (Clytia hemisphaerica)
GAATCGACATTTTTGCCATCGCTGTTGGAGACAAAGCATCCGAAGCCGAT
TTATCAGCCATCACACGTGATCCAGAACGTGTCTTCACTTCAAAGGATGC
CGCCTCTTTGAAAAGCGATGTCTTCATGAAACAAGCGAACGTGATGGAGT
ATCTAAGATTGTCTTCTTGATCACCGATGGTAATCAAAACCCCAAACAAA
GCCCTGATGGAAAAGTCCAATACGACCCTGTCGTTGCATCACAACCAATG
GTTGATAGAGAGAATCGATTTGGCTTTCCAATTAGCCAATGAGAAATTGT
TTACGAAACAATCAGGAATCGACATTTTTGCCATCGCTGTTGGAGACAAA
GCATCCGAAGCCGATTTATCAGCCATCACACGTGATCCAGAACGTGTCTT
CACTTCAAAGGATGCCGCCTCTTTGAAAAGCGATGTCTTCATGAAACAAG
CGAACGTGATGGAGTATCTAAGATTGTCTTCTTGATCACCGATGGTAATC
AAAACCCCAAACAAAGCCCTGATGGAAAAGTCCAATACGACCCTGTCGTT
GCATCACAACCAATGGTTGATAGAGAGAATCGATTTGGCTTTCCAATTAG
CCAATGAGAAATTGTTTACGAAACAATCAGGAATCGACATTTTTGCCATC
GCTGTTGGAGACAAAGCATCCGAAGCCGATTTATCAGCCATCACACGTGA
TCCAGAACGTGTCTTCACTTCAAAGGATGCCGCCTCTTTGAAAAGCGATG
TCTTCATGAAACAAGCGAACGTGATGGAGTATCTAAGATTGTCTTCTTGA
TCACCGATGGTAATCAAAACCCCAAACAAAGCCCTGATGGAAAAGTCCAA
TACGACCCTGTCGTTGCATCACAACCAATGGTTGATAGAGAGAATCGATT
TGGCTTTCCAATTAGCCAATGAGAAATTGTTTACGAAACAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070512-exon-scaffold_56-1575043694:217819..217875 | TCONS_00070512-exon-scaffold_56-1575043694:217819..217875 | Clytia hemisphaerica | exon |
| TCONS_00070512-exon-scaffold_56-1575043694:215652..215777 | TCONS_00070512-exon-scaffold_56-1575043694:215652..215777 | Clytia hemisphaerica | exon |
| TCONS_00070512-exon-scaffold_56-1575043694:214740..214874 | TCONS_00070512-exon-scaffold_56-1575043694:214740..214874 | Clytia hemisphaerica | exon |
| TCONS_00070512-exon-scaffold_56-1510915933:217819..217875 | TCONS_00070512-exon-scaffold_56-1510915933:217819..217875 | Clytia hemisphaerica | exon |
| TCONS_00070512-exon-scaffold_56-1510915933:215652..215777 | TCONS_00070512-exon-scaffold_56-1510915933:215652..215777 | Clytia hemisphaerica | exon |
| TCONS_00070512-exon-scaffold_56-1510915933:214740..214874 | TCONS_00070512-exon-scaffold_56-1510915933:214740..214874 | Clytia hemisphaerica | exon |
| TCONS_00070512-exon-scaffold_56-1491911889:217819..217875 | TCONS_00070512-exon-scaffold_56-1491911889:217819..217875 | Clytia hemisphaerica | exon |
| TCONS_00070512-exon-scaffold_56-1491911889:215652..215777 | TCONS_00070512-exon-scaffold_56-1491911889:215652..215777 | Clytia hemisphaerica | exon |
| TCONS_00070512-exon-scaffold_56-1491911889:214740..214874 | TCONS_00070512-exon-scaffold_56-1491911889:214740..214874 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:214740..217875 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002035 | VWF_A |
Blast
The following BLAST results are available for this feature:
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