TCONS_00070506 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070506
Unique NameTCONS_00070506
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070506 ID=TCONS_00070506|Name=TCONS_00070506|organism=Clytia hemisphaerica|type=transcript|length=537bp
AtttgaataaataattattGAACTTGTGCTGCTGAACCTGAACTTATTGG
ACACTGATTTATGGATTTGATTGGAAATTTAATGAAACATTTATTGATTG
AACTTATGATGTTGAGCTTGGAACTCACACGGATAAGATTTATGGATTTA
CATTTGAATTGAAAACCTTATAGATTGTATcgaaaattggaaaactttgG
ATACAAATTTACGAATAATTCCTATCCGTCATTGGGGGGATATATCGTCA
CACATTTGATTTGAGATTTGAGGATACACATTTACGAATAATTCCTATCC
GTCATTGGGGGAATATATCGTCAGACACATTGATTTgagatttgaatttg
aaaacttttgacatTTAGATTGTATCGGAATGTTGTGATTTATATTTCGG
GGGGAATGTCGTGGAATAGAAATTATGATTGACAGTTTGACCACGTGACC
AGTAGGGTCACGTGGATATATAAATAGCGCGACATTTGTAATTTATGATT
AGTACGAAACCAGAAAGAGAAGAAGAAGCATCTAATA
Run BLAST on NCBI

transcript from alignment at scaffold_56:195514..196122-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070506 ID=TCONS_00070506|Name=TCONS_00070506|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at scaffold_56:195514..196122- (Clytia hemisphaerica)
ATTTGAATAAATAATTATTGAACTTGTGCTGCTGAACCTGAACTTATTGG
ACACTGATTTATGGATTTGATTGGAAATTTAATGAAACATTTATTGATTG
AACTTATGATGTTGAGCTTGGAACTCACACGGATAAGATTTATGGATTTA
CATTTGAATTGAAAACCTTATAGATTGTATCGAAAATTGGAAAACTTTGG
ATACAAATTTACGAATAATTCCTATCCGTCATTGGGGGGATATATCGTCA
CACATTTGATTTGAGATTTGAGGATACACATTTACGAATAATTCCTATCC
GTCATTGGGGGAATATATCGTCAGACATTTGATTTGAGATTTGAGGATAC
AAATTTACGAATAATTCCTATCCGTCATTTGGGGGAATATATCGTCACAC
ATTGATTTGAGATTTGAATTTGAAAACTTTTGACATTTAGATTGTATCGG
AATGTTGTGATTTATATTTCGGGGGGAATGTCGTGGAATAGAAATTATGA
TTGACAGTTTGACCACGTGACCAGTAGGGTCACGTGGATATATAAATAGC
GCGACATTTGTAATTTATGATTAGTACGAAACCAGAAAGAGAAGAAGAAG
CATCTAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043893XLOC_043893Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070506-exon-scaffold_56-1575043694:195797..196122TCONS_00070506-exon-scaffold_56-1575043694:195797..196122Clytia hemisphaericaexon
TCONS_00070506-exon-scaffold_56-1575043694:195514..195724TCONS_00070506-exon-scaffold_56-1575043694:195514..195724Clytia hemisphaericaexon
TCONS_00070506-exon-scaffold_56-1510915933:195797..196122TCONS_00070506-exon-scaffold_56-1510915933:195797..196122Clytia hemisphaericaexon
TCONS_00070506-exon-scaffold_56-1510915933:195514..195724TCONS_00070506-exon-scaffold_56-1510915933:195514..195724Clytia hemisphaericaexon
TCONS_00070506-exon-scaffold_56-1491911889:195797..196122TCONS_00070506-exon-scaffold_56-1491911889:195797..196122Clytia hemisphaericaexon
TCONS_00070506-exon-scaffold_56-1491911889:195514..195724TCONS_00070506-exon-scaffold_56-1491911889:195514..195724Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:195514..196122 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.40458	4.39916	3.72327	2.94195	13.1979	9.09912	7.21362	12.3295	17.0006	24.6043	53.6683	18.5236	21.3264	20.179	60.2322	56.8983	22.6366	24.3174	14.32	20.7135	59.7442	54.9399	39.6336	27.9173	2.73348	6.63124	80.4403	73.7832	57.4732	54.7466
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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