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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070501 ID=TCONS_00070501|Name=TCONS_00070501|organism=Clytia hemisphaerica|type=transcript|length=867bp
GGCGACGGGCGGTTGGAAATTAATTGTATTTGTTCGGTTCCgcaaattac
aaacaaaaatgGCTGCAAAGGACCCGTAAACTTGACCCGCAATTTCAGTG
ATTCCTTTACAAACTTGTTCAAGAAATTTGGTTACTGGAATTATACCATA
GTCAACATGGTCGTTCCAACACAAAAGAGGAAGCTCATCAAAAAGCGAAC
CAAAAGATTTATTCGTCATCAATCTGACCGATATGTTAAGGTCGCAGAAA
GCTGGAGAAAACCAAAGGGTATTGATAACAGAGTCAGACGACGATTCAAG
GGGCAATATTTGATGCCAAACATCGGTTATGGAACTAACGCTAAAACCAG
ACATTGTATGCCTGATGGCTTCAAGAAATTTGTCGTTCACAACCAAAAAG
AATTAGAACTCCTCCTCATGCTTAAAGGAACATACGCCGCAGAAATCGCA
CACAACGTTTCCGCCCGTAAACGAAAAGACATTGTTGAACGTGCCAATCA
ACTTTCAATTAAAGTAACCAACGCCACCGCCAGATTAAGGTCTGAGGAAA
ACGAATAAATTAATACAAAAAAATCTtgaacaaaaattgatttgtCTCAT
TTTATTGAAGCTTATTGAAGGGTGGTAGAACTGCTTTCAGAAATGCATGT
TTCAATCTTGGGGAAAAAGGTTTGCATTTCCTGGCATTTCTACCATCCTT
CAGTATTATCCAAGAATTGTTGAATAAACCAGAATGAGCCCTTTGAGGTA
GGCTTAAAACAGCAAAATGACCTAATTTACAGTGCTACAGGGGCGTTTAC
TAGAAACTTGTATGACTTAAATACTTTGATACAAGTTCTGATTAGgattg
aaaaggaagattttagt Run BLAST on NCBI transcript from alignment at scaffold_56:160841..167505- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070501 ID=TCONS_00070501|Name=TCONS_00070501|organism=Clytia hemisphaerica|type=transcript|length=6665bp|location=Sequence derived from alignment at scaffold_56:160841..167505- (Clytia hemisphaerica)
GGCGACGGGCGGTTGGAAATTAATTGTATTTGTTCGGTTCCGCAAATTAC
AAACAAAAATGGCTGCAAAGGACCCGTAAACTTGACCCGCAATTTCAGTG
ATTCCTTTACAAACTTGTTCAAGAAATTTGGTTACTGGAATTATACCATG
TAAGTTTATCGTCGAAATTCTGGATAATCTCATGATTTTGTATGCTGGAT
GAGTATCATATGCATTGCAGAATAGTTGAAGGTCCTTATGGATGAAAAAT
TTTGGCTTACTTAATGCTATTGGCATTGTTATGCAGCTTTGTTTACATCA
CATTGGAGTTGGCATATTTTCTGTAATGGAGACTGATAGTGTATAATTTT
GGTATATGAATGTTTGGTTTTGAAAGGAATGAATTTCAGCTTCGGTTTGA
GAAATTGCTCTTCTACTTCTCCAAGTAAATTGTTACTGAGCCTGTCAAAG
GCTGATTGAGTTGGTTGTTTGATCTTTAACAGCATTTTTTTTGTTGATTG
GGATTCTGTTCTCAGTGGTATTTTACTGTATTATTCTTGATGATCTATCA
ACGAATTTAACAGATTGCTTGGGTTTTTTGTTTCATGTTCTCACTGTTAA
GTCAAAGATAAACAAGGCTAAAGGAGGGGGAAAAGCTCACTGTTGTAGTC
ATTGGGTCATCCCAGAAAATTTTTGTTACCCCCCATTGGAAGACGTCCAT
TTAAAAATTTTTTTAGCCTCAAAAATAATTTTTCTTTTCCAGTGGTGGTC
CGAAATTCCGATGAAAATCCATGTATTTTTGCAAAATACATCGGAAATTC
GCTTTTAAAACATCAATTGATGTTTTTCTAACCTAAAATCAATTTGTGAG
AGACCCCTAAGAAAGTGGATGATTTAAGTTCGACCAAACATACAATGTTC
ATCACATTCAGCAAAAACTATGTTCAACAGAGTTCAATTACAAATTCTAT
AATAAATTAAATGTTGGACAAAGTTGGACAACAAAGATTAAAGCTGGAAA
TTACGAAATAGAAAATTAGAAAGAAATTTGTGAATATCATTCAGTTTGTT
TTTTTCGTGTTAAATTATAAATATGAAATGTACATCCAAAATAATTAAAA
TAATCATGTGACAAAACAAAGCCAGGTTAAGGGGTTTTAGGTTTAAGACC
TGTGTACATGTCCAGACAGTGTCAATCGAACAAAAATCGCAATCGAACCA
ATCGAACGTAATCGAACGCGATCGAATAATTGCAATTCGATGGTCGAACG
TAATCGAATCTCAATCGAACGGCCGAATCCTGGGTAATATTCGATTGTGT
TCGATTGCGTTTGAATAAGGTAGATTGGTTCGATTAATAGTTGAACTATT
TTCGATTGTCATTTGCATTTGATTTCGATTGATTAGACTAGAGGATTCTG
TTTGATGAGTTTGATTGAATTAAATTGGATCACTCTGTTAGGGCTTTTTA
GGGTTTAGCGGGTGACCGAGTGCTAAAAGTACCGTAGCAAAGCGAATGAA
ATCTAATATAATTGAATCAATCGAACGTAATCGAATACAATCGAACGTAA
TCGAAGCAATCGAAAAGCAAATCCTGGGTTATATTCGATTGCAATTCGAT
TGCGTTCAATTGATTCGACGTTCGATTCGTTGGATTGACACCGTCTGGAC
ATGTGTAACATTTAGCCACAGATTTTAAAAACATCAAACATAAAACCCTA
TCCCATTAGGGAGGGGTCACCCACATATCAATGTTTCCTGCAACTAACGT
CATTGTGAGTGATGCGAGGGGACGGGGGGTCAGAGCCCATGACGCTAAGA
AATTTCAACAGAATATCGATTTGCAAACCTGTAACATTTTGTATTCCATC
CTTCGCTACACCTGCCATCTTAATTCAAATGCATAAAATATAACAGATGA
TATCCAATACCCTTCCGTTACGTTTGTAGGAATATGTTATTATCTCCCTA
ATCATAAAAACAGAGATACCGCAATAAAAAATAGATGGGCCGTATTTTGA
TATACAAGGGCCGCGCTGACAGACCATCTACATAGATATGACGAAACAAC
GAGCCCTTTGTCTGGGGACAAACAAATGTGAAAGTCACAAGTCAAAACCA
TTTGTTTTAAAACCGTGCGAAACAAAGCACAAAAATCAATGTGACTGGAA
TATCAATATCTGTAATAGAGAAGAAAAATTACTTTCATCGATTTTTGTTA
TATTTATGTAAATAATGCTAAGAAAGGGGGGTGGGGTTCTTCAGATAGCG
TCACAATGACGTTAATTGCAGGAAAAATCGATATGCGAGTGACCCCTTAA
ATGTCAAATTGATGTTGTTGGTGTTTTTTGTGGTACAATGAGTATTGATG
TCACTCCTTATCAGAATCTCTGGGAAAAGAACCAAATCAGTATAAGGTTT
CTTATTGTAACAAATGTGAATAAATTTTAGGAATAGTTTCAACTTTCCCT
TTCTGAATCGCACATGGTATTGCATCTCAATGCTCTACTGTGTTGAACCG
TGAAAGGAGATCAGTTGCACTCTCCCATTTTATTACACCTTTCTAATAGG
TGATATAAAAGTAAAGAGTTCAACAAAATTGTTTTTTTTTTCTTTCAAAT
TGAATGAAAATTAGTCTCAAGCTTTTTTATATTCAAGATTGTCAAGTTGG
TCGATTTTCTCTATGGGACGTCAGATATCTAGTAAAGCTAGTGCCTTGAA
TATGAGGGAATGTTGATTATTTTACAGACTTAATGCTTTGAACGGATTTG
AGGAAATTTACTAGATTTTAGATCCTTTAAGTTTAAGGCCTCCTTTGTTC
CATGAATTGCAGAATTGTTTTTGAATTTTTTCCGTGGCTTTTTTTAAGAA
CTGACAATGTAAAATGTAACTGCATTTTCTATATTTTTTTCAATCTTTCT
CTATTAGAAAAAGAGTGGAGGACCTCACAAGCTAACATTACCTTCACAAT
CAACGGTAACTTATTTTCTTTTGATATTCACTACGGGCTTGGTTGAACGT
TTAGTATTTATCAATATAACATGGCTCAAATGAGAATTCAACGTAAAGAT
TTTCTTCAAGAGTAACGAGAAGACAGCCTGTAATTTCAGATTGCATTTCA
GGATTTCTAGATGAATCTTTAGATGGATGTTGATACCATTTGATAGAAAC
ATTTTTGACAACTTTGATTTGAATCTTTAAAATTCTCTCTATGATAGCTA
TGCTTGGATTATGTTTAAATTCGCATGCCAAATTATGTCAAAGTCTGTTT
AAGCTTGATGATTGATAGGTCTCCTTTCTGAATCGCACATGGTATTGCAT
CTCAATGCTCTACTGTGTTGAACCGTGAAAGGAGATCAGTTGCACTCTCC
CATTTTATTACACCTTCTTAATAGGTGATATAAAAGTAAAGAGTTTGACA
AAAGATTTTTCCTCTCAAATGAAATTTAGATTGATTTTGAACTTAAAATC
TGTAGTGCCCCTAATGTTGATCTCTGTCTTAATGACAGATGCGATAAACA
GAGATTTAAATGAAATTAATGAGGCTCATATCTTCAGTTTACCTTAATTT
GTTAACCCGTCTGGAAAGCACCTTCTTTATGCAAGACTTGCAATTATATA
CAAGGTCGTCAAATGAAGGAGATAAATTGCTTCATGGGTGTGGTCTGGCT
TACTATAGTAGCTATGAACAGCAATTATGGAGTAAACACTTATGACTTAA
GCTTTGCTGTCTTCCAAATTTTCTTTATTCAGCTTCCCTAAAAGCAGTGC
TGCAGATAAGGAATAGACCTTTTCAAAAATTACATCACAAACCTGCACGA
ACATCACTTGCCTCGTATTCAAACAATTACCATGGTAATTATGTCCCTGG
GATAAACAGATTTAAATGAAATTAACGAGGCTCATATTTTCAGTCTACCT
CAGTTTTGTTAACCCTTCTGTAAAGCACCTTCTTTATGCAAGACTTGCAA
TTATATACAAGGTCGTCAAATGAAGGAGATAAATTGCTTCATGGGTGTGG
TCTGGCTTACTATAGTAGCTATGAACAGCAATTATGGAGTAAACACTTAT
GACTTAAGCTTTGCTGTCTTCCAAATTTTCTTTATTCAGCTTCCCTAAAA
GCAGTGCTGCAGATAAGGAATAGACCTTTTCAAAAATTACGTCACAAACC
TGCACGAACATCACTTGCCTCGTATTCAAACAATTACCATGGTAATTATG
TCCCTGGGATAAATAGATTTAAATGAAATTAAAGAGGCTCATATTTTCAG
TTTACCTCAGTTTTGTTAACCCTTCTGTAAAGCACCTTCTTTATGCAAGA
CTTGCAATTATATACAAGGTCGTCAAATGAAGGAGATAAATTGCTTCATG
GGTGTGGTCTGGCTTACTATAGTAGCTATGAACAGCAATTATGGAGTAAA
CACTTATGACTTTGATGTCTTTTCTTTATTCAGCATCCGTAAAAGCAGAT
AAGGAATTGAGATAAGTGTAGTGAGAAAAAGCTCCTTATGATGATAGGAA
GATATAACAAATAATAAATAAAACAGAGCATGGACAAAAATTGATTCGTT
ACATTTTTCGACAAGGAATCTCAAGCTTCAATGACAAAAGTAAAATTAGA
CCTTTAAAAATGATGGGTTGATTTGCAGCACAGCCTAAAATAGATAGAGT
TTTCAAAAGAAAAAACTAATTAAAATAGTCCATAGCCACATTCTTTTTCA
CCACTGTTCAGGTACTTTGCGTTTTCAAATTGAGAATCCGATTTATATTT
TGAAAGAGTAACGACGTGTTAAGCTGTAACGAAACTTAAAATCTAAACTT
GTTGATGTATTATAGGTTTTCTCTATTAATACATCAAACCCAGGTATATT
TATTTTCCGATTTACTTCATTGCAGAGTCAACATGGTCGTTCCAACACAA
AAGAGGAAGCTCATCAAAAAGCGAACCAAAAGATTTATTCGTCATCAATC
TGACCGATATGTTAAGGTCGCAGAAAGCTGGAGAAAACCAAAGGGTATTG
ATAACAGAGTCAGACGACGATTCAAGGGGCAATATTTGATGCCAAACATC
GGTTATGGAACTAACGCTAAAACCAGACATTGTATGCCTGATGGCTTCAA
GAAATTTGTCGTTCACAACCAAAAAGTAAGTTATTTATTGTAATTGTTTC
TGATTTGGCCAGCTGATTTTCTTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCT
AGGCCGAATAGGGTTAAACAAAATTAGAAGGCAAATGTGATTGTGATCGT
TTATCACGGGACAAGCTGGAGTTTTTACAAGCTCTTTTTTGATTTGGTTG
GTCGTTAAGATGTAATAAAAGAATGCTATTACTTTTTCTAAAGAACGCGT
AATCTCTATCACTTTAAATGACCAATTAGTGAAGTATCTTGTAAAAACTC
CAAGGCATCTCTTTATCACACCCTTCTGTTACGATCAACATTGAGAGTTC
CCCAAGTTTGAAACATGCAGTGAAAAGCAGTCAGTTAAAACTTACAAACA
GAAAATTCCTAAACCTAATTGTTTTCTTTTCGTTTCTTTCACTTTAGGAA
TTAGAACTCCTCCTCATGCTTAAAGGAACATACGCCGCAGAAATCGCACA
CAACGTTTCCGCCCGTAAACGAAAAGACATTGTTGAACGTGCCAATCAAC
TTTCAATTAAAGTAACCAACGCCACCGCCAGATTAAGGTCTGAGGAAAAC
GAATAAATTAATACAAAAAAATCTTGAACAAAAATTGATTTGTCTCATTT
TATTGAAGCTTATTGAAGGGTGGTAGAACTGCTTTCAGAAATGCATGTTT
CAATCTTGGGGAAAAAGGTTTGCATTTCCTGGCATTTCTACCATCCTTCA
GTATTATCCAAGAATTGTTGAATAAACCAGAATGAGCCCTTTGAGGTAGG
CTTAAAACAGCAAAATGACCTAATTTACAGTGCTACAGGGGCGTTTACTA
GAAACTTGTATGACTTAAATACTTTGATACAAGTTCTGATTAGGATTGAA
AAGGAAGATTTTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070501-exon-scaffold_56-1575043694:167357..167505 | TCONS_00070501-exon-scaffold_56-1575043694:167357..167505 | Clytia hemisphaerica | exon |
| TCONS_00070501-exon-scaffold_56-1575043694:162381..162630 | TCONS_00070501-exon-scaffold_56-1575043694:162381..162630 | Clytia hemisphaerica | exon |
| TCONS_00070501-exon-scaffold_56-1575043694:160841..161308 | TCONS_00070501-exon-scaffold_56-1575043694:160841..161308 | Clytia hemisphaerica | exon |
| TCONS_00070501-exon-scaffold_56-1510915933:167357..167505 | TCONS_00070501-exon-scaffold_56-1510915933:167357..167505 | Clytia hemisphaerica | exon |
| TCONS_00070501-exon-scaffold_56-1510915933:162381..162630 | TCONS_00070501-exon-scaffold_56-1510915933:162381..162630 | Clytia hemisphaerica | exon |
| TCONS_00070501-exon-scaffold_56-1510915933:160841..161308 | TCONS_00070501-exon-scaffold_56-1510915933:160841..161308 | Clytia hemisphaerica | exon |
| TCONS_00070501-exon-scaffold_56-1491911889:167357..167505 | TCONS_00070501-exon-scaffold_56-1491911889:167357..167505 | Clytia hemisphaerica | exon |
| TCONS_00070501-exon-scaffold_56-1491911889:162381..162630 | TCONS_00070501-exon-scaffold_56-1491911889:162381..162630 | Clytia hemisphaerica | exon |
| TCONS_00070501-exon-scaffold_56-1491911889:160841..161308 | TCONS_00070501-exon-scaffold_56-1491911889:160841..161308 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:160841..167505 - |
Blast
BLAST of TCONS_00070501 vs. Swiss-Prot (Human)
Match: RL32 (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2) HSP 1 Score: 199.904 bits (507), Expect = 1.245e-63 Identity = 94/130 (72.31%), Postives = 111/130 (85.38%), Query Frame = 1
Query: 166 PTQKRKLIKKRTKRFIRHQSDRYVKVAESWRKPKGIDNRVRRRFKGQYLMPNIGYGTNAKTRHCMPDGFKKFVVHNQKELELLLMLKGTYAAEIAHNVSARKRKDIVERANQLSIKVTNATARLRSEENE 555
P K K++KKRTK+FIRHQSDRYVK+ +WRKP+GIDNRVRRRFKGQ LMPNIGYG+N KT+H +P GF+KF+VHN KELE+LLM +Y AEIAHNVS++ RK IVERA QL+I+VTN ARLRSEENE
Sbjct: 6 PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
The following BLAST results are available for this feature:
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