TCONS_00070493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070493
Unique NameTCONS_00070493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070493 ID=TCONS_00070493|Name=TCONS_00070493|organism=Clytia hemisphaerica|type=transcript|length=1263bp
NGAAAATCATGCAAGTGCAGAAAACGTGTCGTGCCCATACCTCTCCAAAA
GGAAAAATACCAAGCCTGAAGGACAAAGGTTAGCTGTTTGCTTTACCTTC
GAAAAACCATGTGCTGCAGATTTCAAGACAAGGATAACATACATTGACAG
ACAGAACGAATGTTCGGTTTGCGCATGTCAATCTTTTCAACTGTCATTTG
TGGACATCATTCAACCCTTACCTAAACTTTCTACTGGACAGAGAGAATCC
CACATCAATGAAAGCTCTTTCAGTCAAAGTGCTTCATAATTCAACTCAag
agcaattgttgacgctacTACAACCGTTTACCTTGGATGATGACCAAGAT
TCAGCATTCTTGAAAGTTGGATTTTACTTGCCGCCACAGAGcactatttt
aatgaaattcgaACCCAGTGAAATGAGAACGATCGCACGAATAGCAGTTG
ATAATTACACGTTACTTGATGACCTCGACCGCTACTTGAACAAACTGGCG
AACTCTTAAGAATTACAAAACGGACGGGATTTTTATGTGAATGTTTTCTA
ATATTTtgtattaattttgattttctagCTATTTTCTCGACGATTATCGA
ATTCTGACTTCTGGGCTTAGCATTTTCACTTGAAACAGGGAAATTCAAAG
AAGATGCcttctatattataatacgcttaaatcggaactctcccatttTC
GCTTGAAGCCTTTTCGgtagcgattttttaaagcacACGGTAATTATTTT
CGGTGCTTTTTCTGTATTTATTGGTCAttcaattggtcaattttcagcct
taaaatgaaaaccgtgaaaacatcaaaaaacatGTTTTGTGTTTCGTTAT
TTctaatcttcttttttgaagattttcaagagtaatatccaattttcaaa
gttattccaaagtcaccctcgaatgtctGCCCACGATGTTGacgatggct
agccacgatgATTGGACTACTAAAGGCTTAAGAATAGGTTTACAAGATAC
CCTTGATGGTAGATAAAGATCTACTTTCCTTGCCACTAGATTAAAAGAAT
GGCAGTTTCGATTCGATTTGCTTTCAAAattactctaccattttttctct
ttttttaagaCAGAGTAAgaacatagtataagaaagccgcggctggaatg
agtacagctgaatttctgttgttctatctatgtcgtaagaacgaattttt
tttatggttcagtgacaatttccattgtcaatttaatttgacttttaaca
aactcCCTCGTTG
Run BLAST on NCBI

transcript from alignment at scaffold_56:928658..933749+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070493 ID=TCONS_00070493|Name=TCONS_00070493|organism=Clytia hemisphaerica|type=transcript|length=5092bp|location=Sequence derived from alignment at scaffold_56:928658..933749+ (Clytia hemisphaerica)
NGAAAATCATGCAAGTGCAGAAAACGTGTCGTGCCCATACCTCTCCAAAA
GGAAAAATACCAAGCCTGAAGGTAAACGATCCATAAGTTTgttagtctga
atcacagacctcttAAAAACCCGCTGGTAgtatacacaggaaaaaatgtt
cgaATTCATGGCTggaaaaataccatttttcgCCCCCGAATATGTAAATA
TCCAACCTggaattacgtcattttcgCCGCCGAATATATAAGTATCCAAC
CTGGAATCACGACATTTTCACCCCTGAATAAGTAAATATTCAACCTGGAA
AAATGCTTTCCACCCTGGAAATAAGCCCTTTTCGAACCTGAAAACTATTT
TATGAATTATAACGAGGctggaaaattattttctctgGTGTAAATAAAGC
AATTTTCCTACCCTGTAAAAAGTCATTTTTCCTACCCTGTAAAAAGTCAT
TTTTCCAAGGCTGGAAGAGGCGTCAACATTAACCCTGGAATTCGATAGTT
TGTTCATGTGATAGGTAtcaggagcacgaatccgttagtggatagCAGTA
GTCTATACGTCTGTTGGAGCAGGTATCCCGGCGATTTTCTTTTACACTTT
TGTCTGGATTTTGATATTGGTGATATTGGTAAAAGTGTGAACTGTGTGTT
TTGGTTGGAACTTAAATTTTNTCAGTAGTCTATACGTCTGTTAGAGCAGG
TATCCCGGCGATTTTCTTTTACACTTTTGTCTGGATTTTGATATTGGTGA
TATTGGTAAAAGTGTGAACTGTGTGTTTTGGTTGGAActtaaattttttg
ttattttttccacAAAGGACAAAGGTTAGCTGTTTGCTTTACCTTCGAAA
AACCATGTGCTGCAGATTTCAAGACAAGGTAATTAATTGCTAAAAGTTTT
ACATACCGTATAGTAGGTCTATTAATAAGTTTCTTATATAATTGAAAGAA
GTGttgctttgaaaatattaaCTCTCCGATATGTGTTGATGGTTAAGATG
GTTAATTTTAAATATCTCTACAAATTTTTTACCATTGCAGTTGCATTTTT
TGGCTCGCTTTATCACTTCTCAATGCTAAGGGTCACTTCGCCCTTATTTT
AGGCGTACAAAGTGTCGGGAACAAAAACCTTTGCAACTTTCgcgatttta
gtttttttttctcgcaAAAGTAAACGTCTTTGGAACTGAGTCTTGAGAGT
TTATTCTCGCCAGCGAAAGGTTTTGTCGTTAATTTCACGTAGagtttctg
cttgcgaaagcatgaatgatttttttgttcCCCACTCATAATGTTacttc
aaaaaaagaaatattcttaaattccagGATAACATACATTGACAGACAGA
ACGAATGTTCGGTTTGCGCATGTCAATCTTTTCAACTGTCATTTGTGGAC
ATCATTCAACCCTTACCTAAACTTTCTACTGGACAGGTAAGTGTCCAAAG
CAGCTTGTCATTTTAAATTCACCTCATTCtcatctcgtacccagagccac
ttgcgCCATTTTTTTATTTCCCCAATAGACGTGATACAACCTTTCATGAG
CGCTATCAGTAGATAAGAAGTGAACTAAAGGAACTGGGTTCGACTTTGTT
CTTTGGTTAAAGTGAATATACCGGTAGATGTCATTTTGTGATCCTTGTGG
TTATTggacaaatttacaaaaattggcGCAGTTTATTTTGTaacgccccc
ccccctggggggtactaggtttgcgtaGTGATGGGTATATCCGAGTCAAA
GTTCGACAATCGACCCCTGAAAGACCGAATTTCGACGTTTTTGCGACCCT
CTTAGAGACTTTGTCCCAATTTTTAGCTCAAATTTAccagaatttatgac
ccttttgAGGGAGTCGGTTTTTTGTATTTCGTAATTTTGCGATATTTTCA
GAAACTCAATTGCGAATTTAGCGTTTTATGTAACCTTTTGAGGGACTTTC
GAGAGTTTAAAAAAGGGCTTTTATGACTCGCACATACCTGACATCCATTT
TGcccaagccccccccccccccccccgagtgTAAACCATTATTTTAAACT
GATTCTCATCCATCTTTCCCTTTTTACAGAATATCGAGTTATTCCATCAA
CTTTGGAATGATATTATTAACGACCAAAAGTCTATGTAAGTAGCAATGAA
GTGAATGATTTGAACAATGATTGGCTTTCATCCCTTTGAAGAATAGTTCA
AATTTGtttctaaaggcttggggacacgagaagtttttttcgcgttggtg
caatgcaacatgctccatcccaccaacctgaaacgctttctcgtgtctcc
accccaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNtaccaataaaagtgaaatctgacttttgtcccagggacaaaatcag
cgtgtcttttgggtattttcctcactttttgtcccatgaaacaaaaaaag
aaaccacacactttttttcttgtgttggtgggatagagcatgttgcattg
taccaacgtgaaaaaaactatttgtgtccccaagccttaacttTTACCGG
AATTCATCTTTCTCTTTCAGAGAGAATCCCACATCAATGAAAGCTCTTTC
AGTCAAAGTGCTTCATAATTCAACTCAagagcaattgttgacgctacTAC
AACCGTTTACCTTGGATGATGACCAAGATTCAGGTCAGGATCCCTTTTAT
TCGAAATTCTGCTATTCGAATCTTtatataattcgaactaatccCCAGTC
CCCGCCAAAGAGAAACCCACTTAAAATATcttatattataatacgcttaa
atcggaactctcccattctcgcatgaggctttttcgctagcgatttttaa
atacacggcaatttttttcgcgcctttttgaNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TGTATACAAAtccctacaagtttctgaaaaatagaaaagcgagcgaagcg
agcgtattaaaaggagtaagaagtcgtctcggacgacgccgggacggcta
gtatttaataattcgaatctctctttaatttgaataaaaaagattCCCCG
TttcagttcgaattagcgaCTGTCAACTGTATTCATTTTGATAGTTTGTC
ATTTCCCCACAACTTGTGCGTGTTTGAGCTAATTATTAGTTGGCCTCAAT
TCATTTGCTATATACATACTATCAAGTTAGTTGCTGTTTAACGGCGCACC
GTATAAACTTTCATAACCTTTTTCTTTCATCAGCATTCTTGAAAGTTGGA
TTTTACTTGCCGCCACAGAGcactattttaatgaaattcgaACCCAGTGA
AATGAGAACGATCGCACGAATAGCAGTTGATAATTACACGTTACTTGATG
ACCTCGACCGCTACTTGAACAAACTGGCGAACTCTTAAGAATTACAAAAC
GGACGGGATTTTTATGTGAATGTTTTCTAATATTTtgtattaattttgat
tttctagCTATTTTCTCGACGATTATCGAATTCTGACTTCTGGGCTTAGC
ATTTTCACTTGAAACAGGGAAATTCAAAGAAGATGCcttctatattataa
tacgcttaaatcggaactctcccatttTCGCTTGAAGCCTTTTCGgtagc
gattttttaaagcacACGGTAATTATTTTCGGTGCTTTTTCTGTATTTAT
TGGTCAttcaattggtcaattttcagccttaaaatgaaaaccgtgaaaac
atcaaaaaacatGTTTTGTGTTTCGTTATTTctaatcttcttttttgaag
attttcaagagtaatatccaattttcaaagttattccaaagtcaccctcg
aatgtctGCCCACGATGTTGacgatggctagccacgatgATTGGACTACT
AAAGGCTTAAGAATAGGTTTACAAGATACCCTTGATGGTAGATAAAGATC
TACTTTCCTTGCCACTAGATTAAAAGAATGGCAGTTTCGATTCGATTTGC
TTTCAAAattactctaccattttttctctttttttaagaCAGAGTAAgaa
catagtataagaaagccgcggctggaatgagtacagctgaatttctgttg
ttctatctatgtcgtaagaacgaattttttttatggttcagtgacaattt
ccattgtcaatttaatttgacttttaacaaactcCCTCGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043886XLOC_043886Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070493-exon-scaffold_56-1491911889:928658..928728TCONS_00070493-exon-scaffold_56-1491911889:928658..928728Clytia hemisphaericaexon
TCONS_00070493-exon-scaffold_56-1510915933:928658..928728TCONS_00070493-exon-scaffold_56-1510915933:928658..928728Clytia hemisphaericaexon
TCONS_00070493-exon-scaffold_56-1575043694:928658..928728TCONS_00070493-exon-scaffold_56-1575043694:928658..928728Clytia hemisphaericaexon
TCONS_00070493-exon-scaffold_56-1491911889:929475..929535TCONS_00070493-exon-scaffold_56-1491911889:929475..929535Clytia hemisphaericaexon
TCONS_00070493-exon-scaffold_56-1510915933:929475..929535TCONS_00070493-exon-scaffold_56-1510915933:929475..929535Clytia hemisphaericaexon
TCONS_00070493-exon-scaffold_56-1575043694:929475..929535TCONS_00070493-exon-scaffold_56-1575043694:929475..929535Clytia hemisphaericaexon
TCONS_00070493-exon-scaffold_56-1491911889:929985..930093TCONS_00070493-exon-scaffold_56-1491911889:929985..930093Clytia hemisphaericaexon
TCONS_00070493-exon-scaffold_56-1510915933:929985..930093TCONS_00070493-exon-scaffold_56-1510915933:929985..930093Clytia hemisphaericaexon
TCONS_00070493-exon-scaffold_56-1575043694:929985..930093TCONS_00070493-exon-scaffold_56-1575043694:929985..930093Clytia hemisphaericaexon
TCONS_00070493-exon-scaffold_56-1491911889:931328..931440TCONS_00070493-exon-scaffold_56-1491911889:931328..931440Clytia hemisphaericaexon
TCONS_00070493-exon-scaffold_56-1510915933:931328..931440TCONS_00070493-exon-scaffold_56-1510915933:931328..931440Clytia hemisphaericaexon
TCONS_00070493-exon-scaffold_56-1575043694:931328..931440TCONS_00070493-exon-scaffold_56-1575043694:931328..931440Clytia hemisphaericaexon
TCONS_00070493-exon-scaffold_56-1491911889:932841..933749TCONS_00070493-exon-scaffold_56-1491911889:932841..933749Clytia hemisphaericaexon
TCONS_00070493-exon-scaffold_56-1510915933:932841..933749TCONS_00070493-exon-scaffold_56-1510915933:932841..933749Clytia hemisphaericaexon
TCONS_00070493-exon-scaffold_56-1575043694:932841..933749TCONS_00070493-exon-scaffold_56-1575043694:932841..933749Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:928658..933749 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.109929	0	0	0	0	0.144667	0	0	0	0.0524635	0	0	0	0	0	0	0	0	0	0	0	0.0770006	0.235583	0.708794	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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