TCONS_00070478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070478
Unique NameTCONS_00070478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070478 ID=TCONS_00070478|Name=TCONS_00070478|organism=Clytia hemisphaerica|type=transcript|length=645bp
TAATTTTCTATTATCTAATATCAAAAACTGAACATTCTGCCAATTCTAGA
TCGAGTGACCCAGTTTTGATTCTCTGTTATACGTCTCTAGACGTATTGCC
AACACAAATAAGGTCTGAAATATTATATCCAAAAAGCCATACcattaaga
acaatttgaacCAGCCATTTCCCAAGAGGTTTTTCTCCCCAGAAATGAAC
AGAAGTGAATCTCCATCTAGAAAACCATCTACGACTGGTGTCTTTGTATC
GATATCCAAGCAACTCAGTGACGGTACCACTTGGTGACGTCAGATAGAGT
GCAATTTGACCTCTTTTAGTGAATCTTATAGACGTTAGCAAAGAAACATG
TTCCAGGCATTTGATGTTCGACTTGGTGATTTTAATGGGCAGATTGATTA
GTTCGTTCTTCTTCAATGAAGTCAACGCCCTAAAACAATGAAGAGATAAT
GACGTttttagAAAGGGTGACCATTTTTCCGGCATCGAGAATCCCGAAAC
CGTAACGCGAGTTGAAGCGAAGACCAACACTATTGGTGTACCACGTGACA
GGAAGATTGTTCTGATTGGATGATTTGATGATCAAGCTATAAATGAAGAA
GATCATGATACCTACTTGACACTGAGAGCAAGAGCAACAATAGCG
Run BLAST on NCBI

transcript from alignment at scaffold_56:726529..727836+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070478 ID=TCONS_00070478|Name=TCONS_00070478|organism=Clytia hemisphaerica|type=transcript|length=1308bp|location=Sequence derived from alignment at scaffold_56:726529..727836+ (Clytia hemisphaerica)
TAATTTTCTATTATCTAATATCAAAAACTGAACATTCTGCCAATTCTAGA
TCGAGTGACCCAGTTTTGATTCTCTGTTATACGTCTCTAGACGTATTGCC
AACACAAATAAGGTCTGAAATATTATATCCAAAAAGCCATACcattaaga
acaatttgaacCAGCCATTTCCCAAGAGGTTTTTCTCCCCAGAAATGAAC
AGAAGTGAATCTCCATCTAGAAAACCATCTACGACTGGTGTCTTTGTATC
GATATCCAAGCAACTCAGTGACGGTACCACTTGGTGACGTCAGATAGAGT
GCAATTTGACCTCTTTTAGTGAATCTTATAGACGTTAGCAAAGAAACATG
TTCCAGGCATTTGATGTTCGACTTGGTGATTTTAATGGGCAGATTGATTA
GTTCGTTCTTCTTCAATGAAGTCAACGCCCTAAAACAATGAAGAGATAAT
GACGTGTAAGTAATCAATGTCAAGACACATATCAACCCTTAGCGGTGCGG
TCTTTTAAAGAAGACTGACAACAACAAACAGGAAAATGCTTTTCGACGAC
GGTATTGTAGGTTGGAGAGCTCTTGTGAAAAATGTAAGATCCCCTTGCAT
AAAGTAACGTTGAATTAATAGAACTATGGAACCATAttcaaatgcaaaaa
attgtgtagaacagcggattttattaagactactttcaattcataaaaaa
aatcatttaatgtctcagaAAATTGTCCTTAAAACaatacattcaaaatt
tttatacaaAGCACAACTAAATTTGATATTGACGAAAAATACTTACATTG
ATTTTGTGACTAGAACCTTTTGTGAAACCATAATAACGCCTgttgttttc
caagttttagAAAGGGTGACCATTTTTCCGGCATCGAGAATCCCGAAACC
GTAACGCGAGTTGAAGCGAAGACCAACACTATTGGTGTACCACGTGACAG
GAAGATTGTTCTGATTGGATGATTTGATGATCAAGTATTGAACGTCACGC
CAAGTCAATTGCTGACTGAAAGATATGTTTTGACTTGTTGTCATCCGTCA
AGTACACATTTTATCTATATAAGCTACCCATATTTTTGGGCTGGAACCAT
GTTataaatttagaacgccatggctGGAATTTTAAACACCCTTCGGCACT
ATGCGATAACTAATACATATCAATGAAGAGATATTTAAGATAAAAGAGAA
ATGCtgataatttgaagaaaaaatgatcTGTTTTTACTCGTTTTTCAGGC
TATAAATGAAGAAGATCATGATACCTACTTGACACTGAGAGCAAGAGCAA
CAATAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043879XLOC_043879Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070478-exon-scaffold_56-1491911889:726529..726983TCONS_00070478-exon-scaffold_56-1491911889:726529..726983Clytia hemisphaericaexon
TCONS_00070478-exon-scaffold_56-1510915933:726529..726983TCONS_00070478-exon-scaffold_56-1510915933:726529..726983Clytia hemisphaericaexon
TCONS_00070478-exon-scaffold_56-1575043694:726529..726983TCONS_00070478-exon-scaffold_56-1575043694:726529..726983Clytia hemisphaericaexon
TCONS_00070478-exon-scaffold_56-1491911889:727383..727512TCONS_00070478-exon-scaffold_56-1491911889:727383..727512Clytia hemisphaericaexon
TCONS_00070478-exon-scaffold_56-1510915933:727383..727512TCONS_00070478-exon-scaffold_56-1510915933:727383..727512Clytia hemisphaericaexon
TCONS_00070478-exon-scaffold_56-1575043694:727383..727512TCONS_00070478-exon-scaffold_56-1575043694:727383..727512Clytia hemisphaericaexon
TCONS_00070478-exon-scaffold_56-1491911889:727777..727836TCONS_00070478-exon-scaffold_56-1491911889:727777..727836Clytia hemisphaericaexon
TCONS_00070478-exon-scaffold_56-1510915933:727777..727836TCONS_00070478-exon-scaffold_56-1510915933:727777..727836Clytia hemisphaericaexon
TCONS_00070478-exon-scaffold_56-1575043694:727777..727836TCONS_00070478-exon-scaffold_56-1575043694:727777..727836Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:726529..727836 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.282877	0	0	0.409884	0	0.949242	0.187465	0	0.215349	0	0	0	0	0	0	0.565846	0.346295	0.389019	0	0	0	0	0	0.965216	0.358523
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002884PrprotnconvertsP
IPR008979Galactose-bd-like
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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