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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070454 ID=TCONS_00070454|Name=TCONS_00070454|organism=Clytia hemisphaerica|type=transcript|length=1933bp
ttatgGCAATAACAACTAGATGACATGATTTTTGCGacgaaaacaattca
aaactgCTGTGGCTAACATGACCTGCAGATTTCCTACAAATCTGCTGACA
TCAATCCAGAAAACACCGTATCAAACGAAGCAAACAACAAGTCAAAAAAC
AGGTGTTACACTTTGGAAATAACAATAGCCACAGATATTTCCGACAAATT
TCTCAACAACTATTTCAGAAATCACAAAAGACATCGAATTAAGAAAATAG
CGAACCAACGTCTATGAAGCGAGTCCGCTCAAAGAATCTATCAGTGAGCA
ACAAAGCAAGAAGTATGGAGCATACACCACAAGATATGCAAGAACTCAAT
GAAGAAATGTTTTCTTATGGCATGGAGCATGCACCACATTCACCATCAGA
CCATCGGCACCGTCACGGCTCCACCTCGATGACCATGCAAAGTGACTTTT
CAGACGAGAGCGGTGTTGACAAATCGGATAAAATCAAACGCCCTATGAAC
GCCTTCATGCTTTGGTCGAAACTGAGACGTCGCGAGATTTCCAAAAATGA
CCCCACCATACATAACGCTCAAATCAGTAAGCTGTTAGGTGAAGAATGGA
AGGTCCTATCGACAGAAGACAAGCAACCGTTCCTGAGAGAGTCACAAAAA
CTGATGGCCAAGCACAAGAAGGAGCACCCCAACTATCGATACAAACCACG
CAAAAATAAACAAGAGCGAGGTCATACATCAGGAGGTGGATCATACCATC
AGAAAGCTTTCTCCTTACCAAGCCAAGCTAAACCGTATATGAAATACTCT
TCACATCACCACCATTACAGACCATCGCAATCACGTTCGATGGTGGATGA
TCGTAGACCACCCTCACCGCCCACACACCACCCGGTTGTTTATTATCAAT
ACCGTAAATGTCACGTACCCGGTTGCTACGATTGTGAATATCAACGCGCC
TATGAGTCGCACGGTCCAAGTCCGCCATCTTTCTGTTGCCGTGGTAGCGG
TTATGAAAAATCGAATACGCATGCGTCGAGACGTTGCATGTGTTGCTCTC
CACCACCCTATCACCAACCCACCTGCATGGGGTGTAACCGCCAAAGCCCA
CCACCACCCTCCTCAAATCAGCAACGAAATAACAGCTTTACAGTTGAATC
TCTCATCAACGATCGAGGCTATAACTCATCTGGTAAATCGACATGCACTA
GCTCGTGTTCCAATGGATCGACGTCACCAAGCACCAGCCTGAGATCGTCA
GCAGAGAATGACACAAAGGGATCGGAGGGGTCTGGTCCCGAAGAATCTTA
ACTCTCAACAAACACgaattaaaaatgacaaaatgttATTGAGTCTGAAA
CATTATGAGAAATTTgggtgtaattttttttgttcttttttatagcGGTG
TATATTATATTAAAAATAATCTAATTTGGTTTTAAGATTGAAATATCAGA
TGAACGGTGCTTACGTTGCAAATGTTCATTTGAAAAGTTTTAGAAATTCT
ATGATTTGACAAATATTTACTCAAATTAATACATAATGATTTTAGTGAAA
AAAGGTGCCGATCATAAAATAAGACGTTTCTGTCTCAATGTGTGGGAGTC
ATTTGTTTTAGTTTAATAAAAACCGATGatattggaggataattttatCT
ATTCAGCTTTAAATGGGGATGATGTTGTCATTGGAGACTATTTTTAGCCC
AATTTTCCAAATCTAGGAGAGGTCTGGGTCTGTGATACATGGGGTGTAAA
ATGTAACAGTAATAATAACGTATTACAGGCTGGAAAGAAAATATATCGtc
taatttattattttttaaatgattttaattgtacataattaacggtaatt
ttttttaacgaAATCCAGAATCAAAGGAAAACTTTAATTGCTTTACTACT
CATAAAGATATCAAGTATGCGTTCTAAAAAACA Run BLAST on NCBI transcript from alignment at scaffold_56:461139..463591+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070454 ID=TCONS_00070454|Name=TCONS_00070454|organism=Clytia hemisphaerica|type=transcript|length=2453bp|location=Sequence derived from alignment at scaffold_56:461139..463591+ (Clytia hemisphaerica)
ttatgGCAATAACAACTAGATGACATGATTTTTGCGacgaaaacaattca
aaactgCTGTGGCTAACATGACCTGCAGGTACATGACCTGGAAATGACCT
CCGTCATTGCCAATTGGCTGTTACCAATTTTGGACGACTGTTAATCGNAC
CTCCGTCATTGCCAATTGGCTGTTACCAATTTTGGACGCCTGTTAATCGa
gtctttctataatttgaatctctcCCAGTGTTTGAACAAATTAAAATAAT
gaagaattatttttgaaagcAGTTATGATGCAAACAAAGACTCTTTAAAC
TGACCAGACTAGCgcatttgaaaaattggaaaaacgtCTACAGACAGCAA
TATTTGTGAACTATttcaaaatgattgaaaaacctttcaaatattttttt
tagaaaatgtgaCATGGCGGCTTTTAgtaccgttggaaaggtatttttat
aCTTTCTAAACCATTTGGTACAGCCCTTTGTCTTTCAATTAAgtggtcaa
aagttatgacttcaTGTTTCCAGTATATGATGggtttattgaattttgaa
tatatttctttttcttaacCTTACAATATCTACCTTTTTTTCCTTTAGAT
TTCCTACAAATCTGCTGACATCAATCCAGAAAACACCGTATCAAACGAAG
CAAACAACAAGTCAAAAAACAGGTGTTACACTTTGGAAATAACAATAGCC
ACAGATATTTCCGACAAATTTCTCAACAACTATTTCAGAAATCACAAAAG
ACATCGAATTAAGAAAATAGCGAACCAACGTCTATGAAGCGAGTCCGCTC
AAAGAATCTATCAGTGAGCAACAAAGCAAGAAGTATGGAGCATACACCAC
AAGATATGCAAGAACTCAATGAAGAAATGTTTTCTTATGGCATGGAGCAT
GCACCACATTCACCATCAGACCATCGGCACCGTCACGGCTCCACCTCGAT
GACCATGCAAAGTGACTTTTCAGACGAGAGCGGTGTTGACAAATCGGATA
AAATCAAACGCCCTATGAACGCCTTCATGCTTTGGTCGAAACTGAGACGT
CGCGAGATTTCCAAAAATGACCCCACCATACATAACGCTCAAATCAGTAA
GCTGTTAGGTGAAGAATGGAAGGTCCTATCGACAGAAGACAAGCAACCGT
TCCTGAGAGAGTCACAAAAACTGATGGCCAAGCACAAGAAGGAGCACCCC
AACTATCGATACAAACCACGCAAAAATAAACAAGAGCGAGGTCATACATC
AGGAGGTGGATCATACCATCAGAAAGCTTTCTCCTTACCAAGCCAAGCTA
AACCGTATATGAAATACTCTTCACATCACCACCATTACAGACCATCGCAA
TCACGTTCGATGGTGGATGATCGTAGACCACCCTCACCGCCCACACACCA
CCCGGTTGTTTATTATCAATACCGTAAATGTCACGTACCCGGTTGCTACG
ATTGTGAATATCAACGCGCCTATGAGTCGCACGGTCCAAGTCCGCCATCT
TTCTGTTGCCGTGGTAGCGGTTATGAAAAATCGAATACGCATGCGTCGAG
ACGTTGCATGTGTTGCTCTCCACCACCCTATCACCAACCCACCTGCATGG
GGTGTAACCGCCAAAGCCCACCACCACCCTCCTCAAATCAGCAACGAAAT
AACAGCTTTACAGTTGAATCTCTCATCAACGATCGAGGCTATAACTCATC
TGGTAAATCGACATGCACTAGCTCGTGTTCCAATGGATCGACGTCACCAA
GCACCAGCCTGAGATCGTCAGCAGAGAATGACACAAAGGGATCGGAGGGG
TCTGGTCCCGAAGAATCTTAACTCTCAACAAACACgaattaaaaatgaca
aaatgttATTGAGTCTGAAACATTATGAGAAATTTgggtgtaattttttt
tgttcttttttatagcGGTGTATATTATATTAAAAATAATCTAATTTGGT
TTTAAGATTGAAATATCAGATGAACGGTGCTTACGTTGCAAATGTTCATT
TGAAAAGTTTTAGAAATTCTATGATTTGACAAATATTTACTCAAATTAAT
ACATAATGATTTTAGTGAAAAAAGGTGCCGATCATAAAATAAGACGTTTC
TGTCTCAATGTGTGGGAGTCATTTGTTTTAGTTTAATAAAAACCGATGat
attggaggataattttatCTATTCAGCTTTAAATGGGGATGATGTTGTCA
TTGGAGACTATTTTTAGCCCAATTTTCCAAATCTAGGAGAGGTCTGGGTC
TGTGATACATGGGGTGTAAAATGTAACAGTAATAATAACGTATTACAGGC
TGGAAAGAAAATATATCGtctaatttattattttttaaatgattttaatt
gtacataattaacggtaattttttttaacgaAATCCAGAATCAAAGGAAA
ACTTTAATTGCTTTACTACTCATAAAGATATCAAGTATGCGTTCTAAAAA
ACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070454-exon-scaffold_56-1491911889:461139..461216 | TCONS_00070454-exon-scaffold_56-1491911889:461139..461216 | Clytia hemisphaerica | exon |
| TCONS_00070454-exon-scaffold_56-1510915933:461139..461216 | TCONS_00070454-exon-scaffold_56-1510915933:461139..461216 | Clytia hemisphaerica | exon |
| TCONS_00070454-exon-scaffold_56-1575043694:461139..461216 | TCONS_00070454-exon-scaffold_56-1575043694:461139..461216 | Clytia hemisphaerica | exon |
| TCONS_00070454-exon-scaffold_56-1491911889:461737..463591 | TCONS_00070454-exon-scaffold_56-1491911889:461737..463591 | Clytia hemisphaerica | exon |
| TCONS_00070454-exon-scaffold_56-1510915933:461737..463591 | TCONS_00070454-exon-scaffold_56-1510915933:461737..463591 | Clytia hemisphaerica | exon |
| TCONS_00070454-exon-scaffold_56-1575043694:461737..463591 | TCONS_00070454-exon-scaffold_56-1575043694:461737..463591 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:461139..463591 + |
Blast
BLAST of TCONS_00070454 vs. Swiss-Prot (Human)
Match: SOX2 (Transcription factor SOX-2 OS=Homo sapiens GN=SOX2 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 5.566e-24 Identity = 41/76 (53.95%), Postives = 65/76 (85.53%), Query Frame = 3
Query: 477 DKIKRPMNAFMLWSKLRRREISKNDPTIHNAQISKLLGEEWKVLSTEDKQPFLRESQKLMAKHKKEHPNYRYKPRK 704
D++KRPMNAFM+WS+ +RR++++ +P +HN++ISK LG EWK+LS +K+PF+ E+++L A H KEHP+Y+Y+PR+
Sbjct: 39 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRR 114
The following BLAST results are available for this feature:
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