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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070441 ID=TCONS_00070441|Name=TCONS_00070441|organism=Clytia hemisphaerica|type=transcript|length=1927bp
CGTGGTTTCCTTCAGTCATATGCCTACCTTTTGGATATACATATACAGGC
TTTTTACTTTATTCAGTTACGTTTAGCCAATACTATTTAACTAATTTATA
AACCGACCGAATGACATTGTTTTCGCTTTTGAGAAAATTACAGTAACTCT
TCATacaatttatttattaattttagaAATTCAGTCTCCTTTCTTCGTAT
CTGGAAAATTGTACTAATATCTATGTTGGAACCCTACCACTTTTCTTCTA
GCCTAATTTTATTGAGAGAATCGTCTCTCCTGCTAGTATGtagataaaaa
agaagaaatttgaaCTGGTTTATTTGTTTCTAAAATCCCACGAACTTTTT
ATAGTTTAAAGCATAGTTTTTACAAAACTTGCTTTTTTAAAATGTACAGG
CGAAGGCAAGAATGATCTTGTGTGGCTTTGAGTATCTTTTAAGCACGTTT
AAGCACTCGAATCATTATTAGAAGCCTTGGCATCTTTTGCATCGACTAAT
CTGTAAGTGAATCGGAAGGTGATACGGAATTAGTAATACGGTCAGgtgaa
attctatcaaaaaagatttctagGAACAGCTTCGGCAAGTTTTGTTTGAG
ACtttcgaagaaaaaattttctttgaaaNTTTCTAGGAACAGCTTCGGCA
AATTTTGTTTGAGACtttcgaagaaaaaattttctttgaaagtgaaaatc
gtaagtaaagaagaaaaagatgaagaagaaaactaaCTAACCGATATTTG
TTTTTagattataaaaacattcaagctGTGTGGATAGAGTTGATATAATG
GAGTACTGAGTACTGTCGTTAAGAAATTGCACGCAAGCCATCCAATATAT
AGTCGGGTCAATATATTTTAGTGATGAcgatttaatttgattttcaatga
cTCAAGATTTATTTCAAACAGTTcagtttcttacaaaaaatacgAAATAT
TAATTAAGTTTTTCTTATCGGGGGTGTAAAAGATTTGTTTATTAAAGTGA
TCTCAAGACTCGAATCACTTCAAAAAACGGAAAAAGGGAATTCATAATTA
ATGTTCCCTTCTGATTGGTTTAAATGATAAATCACTTAGGAGTGAGAAAA
AACTTTCGATACTTTGTAGTCTAATTTTAGGACGTCTTGAGAATAGGTta
atattatctttttttaaagaaacataTAACTTTTCACAACCAATTTCGAT
TTATCTTCGTTCTGGAGATACTGGATTGAACACCTTACGGAAAAGAGGTT
TTCACAAAACAAGGTATGTTCAACAAATCAACGAATGAAAAATAGTCTTA
CAAGtattttttcgttttaaagACCATGTTCTTTTTAACCACATATCtat
aattataaaaaacgtataattataaaaatattagtccctttttatgtttc
atcttgattttatttagtattttcaacactttctctccttgatatcagat
ctctgatcttcaccgtAAATACAATCTGTGCCGAAAtataattggcaatt
ttgggtattttaacgttttctaGAATCtaaagctcgggcgagaattgtAC
TTCAACTTTGTTCCAGTGAATTTCTCGACTTGGGAGGGATTAAttggctt
ccaggctatgttCTCAGCTATATTGgaacattttgagcttttagatcctg
agatcctaagctctaatgttaaaactagagttaaaactctactttctaac
cgtactttaaagcacttaaaatcacttgcggttttaaagttttaaatgaA
TTCCTCTTTTGGGCCAAATTtttcggcgctgattgtagCTGTCTTGAAGC
AGAACTATCTATGTACAAGATCTATGATAGAGACTCAATCTAGTTTTACC
AATTAGACAAACCAAACAGACTTCTTTGTTGGAGATATCAagttattaat
tttttatctgaGGAAGGGCTGACCTTA Run BLAST on NCBI transcript from alignment at scaffold_56:326386..328312+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070441 ID=TCONS_00070441|Name=TCONS_00070441|organism=Clytia hemisphaerica|type=transcript|length=1927bp|location=Sequence derived from alignment at scaffold_56:326386..328312+ (Clytia hemisphaerica)
CGTGGTTTCCTTCAGTCATATGCCTACCTTTTGGATATACATATACAGGC
TTTTTACTTTATTCAGTTACGTTTAGCCAATACTATTTAACTAATTTATA
AACCGACCGAATGACATTGTTTTCGCTTTTGAGAAAATTACAGTAACTCT
TCATacaatttatttattaattttagaAATTCAGTCTCCTTTCTTCGTAT
CTGGAAAATTGTACTAATATCTATGTTGGAACCCTACCACTTTTCTTCTA
GCCTAATTTTATTGAGAGAATCGTCTCTCCTGCTAGTATGtagataaaaa
agaagaaatttgaaCTGGTTTATTTGTTTCTAAAATCCCACGAACTTTTT
ATAGTTTAAAGCATAGTTTTTACAAAACTTGCTTTTTTAAAATGTACAGG
CGAAGGCAAGAATGATCTTGTGTGGCTTTGAGTATCTTTTAAGCACGTTT
AAGCACTCGAATCATTATTAGAAGCCTTGGCATCTTTTGCATCGACTAAT
CTGTAAGTGAATCGGAAGGTGATACGGAATTAGTAATACGGTCAGgtgaa
attctatcaaaaaagatttctagGAACAGCTTCGGCAAGTTTTGTTTGAG
ACtttcgaagaaaaaattttctttgaaaNTTTCTAGGAACAGCTTCGGCA
AATTTTGTTTGAGACtttcgaagaaaaaattttctttgaaagtgaaaatc
gtaagtaaagaagaaaaagatgaagaagaaaactaaCTAACCGATATTTG
TTTTTagattataaaaacattcaagctGTGTGGATAGAGTTGATATAATG
GAGTACTGAGTACTGTCGTTAAGAAATTGCACGCAAGCCATCCAATATAT
AGTCGGGTCAATATATTTTAGTGATGAcgatttaatttgattttcaatga
cTCAAGATTTATTTCAAACAGTTcagtttcttacaaaaaatacgAAATAT
TAATTAAGTTTTTCTTATCGGGGGTGTAAAAGATTTGTTTATTAAAGTGA
TCTCAAGACTCGAATCACTTCAAAAAACGGAAAAAGGGAATTCATAATTA
ATGTTCCCTTCTGATTGGTTTAAATGATAAATCACTTAGGAGTGAGAAAA
AACTTTCGATACTTTGTAGTCTAATTTTAGGACGTCTTGAGAATAGGTta
atattatctttttttaaagaaacataTAACTTTTCACAACCAATTTCGAT
TTATCTTCGTTCTGGAGATACTGGATTGAACACCTTACGGAAAAGAGGTT
TTCACAAAACAAGGTATGTTCAACAAATCAACGAATGAAAAATAGTCTTA
CAAGtattttttcgttttaaagACCATGTTCTTTTTAACCACATATCtat
aattataaaaaacgtataattataaaaatattagtccctttttatgtttc
atcttgattttatttagtattttcaacactttctctccttgatatcagat
ctctgatcttcaccgtAAATACAATCTGTGCCGAAAtataattggcaatt
ttgggtattttaacgttttctaGAATCtaaagctcgggcgagaattgtAC
TTCAACTTTGTTCCAGTGAATTTCTCGACTTGGGAGGGATTAAttggctt
ccaggctatgttCTCAGCTATATTGgaacattttgagcttttagatcctg
agatcctaagctctaatgttaaaactagagttaaaactctactttctaac
cgtactttaaagcacttaaaatcacttgcggttttaaagttttaaatgaA
TTCCTCTTTTGGGCCAAATTtttcggcgctgattgtagCTGTCTTGAAGC
AGAACTATCTATGTACAAGATCTATGATAGAGACTCAATCTAGTTTTACC
AATTAGACAAACCAAACAGACTTCTTTGTTGGAGATATCAagttattaat
tttttatctgaGGAAGGGCTGACCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070441-exon-scaffold_56-1491911889:326386..328312 | TCONS_00070441-exon-scaffold_56-1491911889:326386..328312 | Clytia hemisphaerica | exon |
| TCONS_00070441-exon-scaffold_56-1510915933:326386..328312 | TCONS_00070441-exon-scaffold_56-1510915933:326386..328312 | Clytia hemisphaerica | exon |
| TCONS_00070441-exon-scaffold_56-1575043694:326386..328312 | TCONS_00070441-exon-scaffold_56-1575043694:326386..328312 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:326386..328312 + |
Blast
The following BLAST results are available for this feature:
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