TCONS_00070436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070436
Unique NameTCONS_00070436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length989

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070436 ID=TCONS_00070436|Name=TCONS_00070436|organism=Clytia hemisphaerica|type=transcript|length=989bp
TTCTGGCAGCTTTATTGAACGTTTGGTGATGACAGGCTTAATTTATTCAA
ATGGAAGCAGCAACTCAGATGTTAAAGCGAGCTGTTGAGCTTGACACATC
TAAAAAATATTCAGAATCAAAAATTTGTTATGAAGAAGGTATAGAAATGT
TGTTAAAAACCTTAACAAAAATGACCGATGAAAATGCTAAAAAGGTCATA
CGACAGAAGATTGATGGGTACATGAAAAGAGctgaagaactgaaaaaatt
tGTCAAGAAGTTAAAGAAAGATGGGAAATTTcatgagaaaattgaaattg
aaaataatcaaagagGCTGTAGTTATGGAAGCCTTTTTTCTAAATTCATT
GATGATAATTTGACTGTTGTTGAGATTAAAGATGCTTACATTAGAAGTCA
TCATCAGATATTGAATTTATTGAGATTTTGCGAGCTGTTGTTACGAAAAG
CCAAGAACTTGAATGCCATCAACATTACAACAGGCAGTGATGAGAATCAA
CCAGAGGAACaagctcaaaaattaaaaaatttaacaacAAGTTTAGATTC
ATACAGGGTGACATTATCTATAAAATATGAAGACACTCTACATGATCGTG
AAATATTATTTGATAATGGTTGGATTATCAAGATAGGTAGAGGATTGGAT
TATTTTAAAAGGCCAAACGGTCCTTTCTCAATAGGATTTTGTGATATGGA
TTTAAGACAATGTCATAAAACAACCATTGACATATATGATGCACGATAAc
attattttcttatattttttgtatTCAAAGTCactctatttattttttaa
ctattttttcaacttatctAATGCTATGCTATTTTAAGAATTTGTTTGtt
tcattatttatttttcaacttacttgtatttcaaaaacattatactatat
ttttttctttttataatatttgTTTCATTCTTTCATATTTACAGTGAAAA
TAAATTAACACCATGCATAAACATTTAATATTTCCAAAG
Run BLAST on NCBI

protein sequence of TCONS_00070436-protein

>TCONS_00070436-protein ID=TCONS_00070436-protein|Name=TCONS_00070436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MEAATQMLKRAVELDTSKKYSESKICYEEGIEMLLKTLTKMTDENAKKVI
RQKIDGYMKRAEELKKFVKKLKKDGKFHEKIEIENNQRGCSYGSLFSKFI
DDNLTVVEIKDAYIRSHHQILNLLRFCELLLRKAKNLNAINITTGSDENQ
PEEQAQKLKNLTTSLDSYRVTLSIKYEDTLHDREILFDNGWIIKIGRGLD
YFKRPNGPFSIGFCDMDLRQCHKTTIDIYDAR
Run BLAST on NCBI

transcript from alignment at scaffold_56:283058..297332+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070436 ID=TCONS_00070436|Name=TCONS_00070436|organism=Clytia hemisphaerica|type=transcript|length=14275bp|location=Sequence derived from alignment at scaffold_56:283058..297332+ (Clytia hemisphaerica)
TTCTGGCAGCTTTATTGAACGTTTGGTGATGACAGGTATTATTTAATCTT
CACTTTTTatgttcttctttttattttcgaatTCAACTTTATTTTATACC
AAGACAACCCTCTGCCGAGAACGCGTGCACACTACTACATACACTGCACG
CACTGGACTGGACACAGTCCGGTagacgacccacggcatggcccgaacat
ggtcgggcctgttcggaccatgctcgggccacaaaaaagtattattgaat
cggcccgaacaaGCAAGTCTAGCTATCATTGTCTTTAAAAGGAACATCAT
AGGGGAATAAATAGGGGAGGAatagtagaatttaattttatttacctttc
ctggtttatcatcatccattgttaaatattttcattagacaaattcaaag
ttccaaaaaccagtttgattcacaaagttgtttAACAGTACAGGCGTTGT
GGTATAatagtggacatcaaccttgattcctgttCAGGCaaccaaggttc
gattcccactcgctaacaacggttcacttggcaagtgaacaaaccttcgc
ccggctcaacccatgccatgtgaggggtattgggtagtcagttcaaggtg
ctgacgggatgcttactcaaagcatctatagttgcgagaatgggctccCA
GGGCCTCCagtaactcaaccataataaATACAATAGATAGACgaaaaacg
atccagaaaaattctgcttcgaatagaagaagaccacgagaaaagggaac
gggataaagaataaaaagaagaccatattatgtaagattcaaattattct
ttttaataattttcctaacttaattggaaaatagatgattaacttttata
tttgaacaatataNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNatagatgattaacttttatatatatttgaacaatatatat
ttgaataaagatgaagatttttaaatttgtttgctaaaataaggaattta
aaatataaattttgggtcctgaaattacacgcgcaaccgtagcaagtttt
cgaaaatctcgcccgaacatggtccgaaactgcgcgggccTGCGCGGGCC
ACGcgcgggccatttttaaaaagtattaatcaagaggctcgaacatgttc
gggccatgccatGGGTCGTTCCGGTAGGTGTTTTGTCTGGTGCCAAAAAG
TATCCCTCAgccaaaccttttgtccagacggtactaatcgataaattcaa
ttatcgaagtaatcgataatgatcgaagtcagtcaggcacatcctgccaa
atgaacggggtacttgtgattggtggcaaatgcaaggggtcgaaaacaaa
agtgatgtaatagtgCTGAACACCCCacgcaattgaaccgggtttgaaat
attttgcttcattttgaagaactgcatagatgaaattttttttccatggg
tcaattttttcttcgaagtttgaaaaaacttttaacaaaaaaatgaagtt
cccagttttcttccttttttcccattttcagtttgaagttcatttttatt
cattttcacgcttttagcctgagacgtcctatctcatttacactgggtga
cgaatacccccatgcaaatgctcaccccgttcatttgccaggatgtgcct
gactggaAGTAATCGAACGACCATTTAATTTaggcggccatcgaaaaatt
gttctattcgcgtctgTAAAAGCGACACAAGCCAGTATCATATCATATAT
ATTAAGTCTCTTTATTATAGGTCTAGTCTAAAAATATAGAACAAGATCGT
TACACATGCACACTACTTGTACATGGGTCAAATGAAATATCTCTAAAAAA
ACTGCTGTGAAACCGATATGCGGTCAGTCTGTGTaactgtaaaaaaataa
aatatgtaTGGCCGTCATGGCGACTAGTCCTCCTCAGCAAATCGTACTGG
GGCTCTCCGTGGTCTCGTTGACCTACGAACAAAATCGTGTCTAATTGGGT
GAACATCCTCGTGTTGTGGGGCAGGGTTGGCGACTTCACCATTTCGTTGG
AGGAGCACTTGTTGTGGTGGAGTTGGTTCCTCGAAGTCCCATTGCTTCTG
CGTGTTTCTGTTGTCCTCATCGgcgtgttgttgttgttgtcgtcNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNcagattgaaaaatttcacttgcatcctggtggatg
atatcgtctgccaacttTCATTCGATTCTGCACACAAATTACCAGAACAA
GAATCGGCTGTATGACCTTGTCCATCAATGGGAACCACTGCATGTATCGT
TTCATCATGGTTTCTTCTGGGTGTCCCTCGTGTGCTATGTCAATGAGATT
CAATCGGAGGTTGCATTGTCCTGGTTGCACGGGTGTGTCTGGAACATAGA
TTTGACCCCCTCTCATGATGTTATTTTCGACCGATAGTTCTTTGTAGATT
CTGCTGTTGACTTCTGATCCAGATGGCGGCTCTGGTCTGCCTTTTGAGAT
GTCTTCCATGAGTTGTTGGTAGTGTGGATCACTTTGAGTAGCATGTCTGA
TGGTGTCGATGTCAATCGCCGGTGTTGTGTTGTTGAGGTTGATTTTCCGT
ACTAGAATGGTTGTTCCAATATTGAAGCCTAGATCGTCTTGATCGGGTTC
GGGTGTCTGCTACCATAGTCACATGGCATTTCTTTCCCCTTCAGGTAGCG
GAGATTAAATTGGAGATCTTGAACCCGGTCTCTGTGGTTGCTGATTTTGC
GGGATGCCAGTTGCTGTCGATTGTTGTAGATTGGAATGAGAGGTTCATGG
TCTGTCCATGCTGTGAATTGGCTGCCGACAACGTAGTAGCAAAACTGCTC
CATTGTGAAACAGAGACCAAGACTTTCTCTTTCAATTGGACTGTACCGTT
GTTCAACATCGGTTAGAGCTCTGTTGTTTTGGTCTATCGGAACCCACATA
CCTTCTCCCCTCTCCTGGTAGATGCATGCTTGGATTCCTACCTCTGATGA
GTCCGACACCATGTGAGTCTTTTCATTGGGATCGTACGCTTGTAGAGTCG
CTGGATCGTCCAGGATTTGCATCAGTGTCTGGTATGCAGTTTCCTCTTCT
TCCTGCCAGCGGAATTTCTCCCCCTTCTTCAACAATATGCGAAGCGGTGC
GGTAGTGTCTTCATATGTTGTGTGTAGTTTGTTGTTGAATGTGAACTTTG
CATTGTACTGGCAAGCCATCAACAAAGAGCGAACATCCTCTGTGTTTTCA
GGTCTGCCACCGTCTTTGATGTTTTGAATCTTCTTTGGGTCCGCTGTCAC
GCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTAGCTGAAGTTGATGGTAACCCCAGCCCATGTCCATTTCACTGAA
AATCTTCGCTTCCTTCAGGTCGTGGCGGATCTCCTGTGGTGTTTGGACGT
GGAATCCAGTGCGCTTCATCCCGCATTGCGTGGTGTGTTGTCTATGTTCA
TCCTGATTTGACCATTGCTTTTATCTGTTATCACCACGTTCATCACGCAG
TCATAGCTTTCTCGTGGGTCCACATNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTTGCTATTGATCTTGCTTCCTTTGGCGTTCTCGATCACA
GTGTGAACCATTCCGGTGATGTTGAGATTGTTTGAAGATCCCCATGCCCT
GAGTATGATGTCTGGCTCTTCCAGGGGTCCCATGGCGTTGCTGTAGTGTT
CAGGTGTGATGATGGTGGGCTGGCTACCCGTGTCTGCGAAGAGGGTGTGT
TTTGTGCCGCCTATCTTGACATCGACCCATTTGTCTGCTGGTTTAGTCAC
CTTCTTTATGGCAGTGAGTGTAGTAGGTTCTTGGTTCGAGTCATTTCGCT
TCAATGTTGTAAAGTAATCTGCGTTGATTCTTTTGACCGTCTTCTTTCCA
GGACAAATTGGAGTTCTGGCAAAATGGTTCTTCCCACCACATGTGAAGCA
TTCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGGCGTCGTCTCGGCCTGCTTCTCG
TGCTTGGCCCCATCTGGAAAGTTTCTCTAGGTTTGGATCCTCCGCAAGCG
CCTTCTCTCTCAGGCTGACATCATTCATGCCAAATATGGCAGCATCCTTT
ATAGCTTCCTCTGTGGTGTAAGGTTTGTTGTCAAAGTTCAGGGACTTGGC
CTTCTTTTCGAGATCTAGAAGGAAGTCACCCCACGTTCGTGTTCCTTGTT
TGGTCCCCAGAAGCTGGTGCATGGCCATTGTTCGATTGACCATACGTCTC
AGATAGTAACGTAGCCGTTCAATAGTCTGCATGTAGGTGGGTGCAGCTTC
TGCGTTTGCTTCTGCAACTTCCCCATTTGCTTGTGCACCTTCTTCGTTTG
CTCGGGCTCCTGTGTTGAGGTGTGATCTCTCTGCACGAATCAACTCAACC
ATCTCTGGTCCTCCCCAAGTTTTCAGGAGGATGATCTTTTCTTTGTCTAC
TGTTACACCAATGTAGTCCATCCTGTTTTCTGCATCATCAAGCCATTCGT
TAAAGAGAATGAGCTTCTGCATTTTGTCAGTGCCTAGGCCGCATTGTCGT
ATCGGCCCAAGTGCGGATGGATCATTCTTTGGTGGTGTTGCAGCTGCCGC
AGCAGGAGCTGCTTGCTGTAGCTGACCGCCAGTGATAGCTGCCATAAGTG
TCTGGAATTGTTCAGGACTGAAATTCATCTTGAACTGCGTTGTTCGTATT
AGACAGGAAAAGGAAAGGTCTTACCTACAACGACCAGGGCACACCTGGTG
TGATGAAAGTTTCAGTAAGACTATGACGtgtctttcttcttttccttgat
CACGTGACTTGTGAGGTCGTCTCCTGTGCTATGTTGGCAGCGTCTTGATT
CAGTGATTGATCAGTCAAATAGAGTATGGTAATAAAGTAAGGAATAGTCT
TACCTCGAAGGTCCAGGGCAAACCTGGTATGACTGAGCTTTTGGTAAGAC
GTCCAAGTCTTTATTCTGGATCAAGTCTGTCAGTGTGTTGTGTTTGTGTC
CAGTTTCAGCTAGTGGTCTTGTGTGTATCACTATATGTATCTTGTTTCAA
TAGTCTCTTCGTTGCCAGTGTAAAAGCGACACAAGCCAGTATCATATCAT
ATATATTAAGTCTCTTTATTATAGGTCTAGTCTAAAAATATAGAACAAGA
TCGTTACAGCGTCACCCGCCCACATCAtatttttcgctgattttccggtg
cggagaagcggaaaaaaatccaggaaaagcaatttgttcttttaaagtat
agctttttcttAATCGCTCTgacggccatcgaaaaattgttttgttcgCA
TCACCACCCGTCCTCAAATTACTGGcgtaattaaaaaaaacccgggaatt
tTTCTGACCGCctgtccgcccgcatgcatttttaacacctgttgcgacgc
gaacagagcattttttctaTGGCCGCcttatcgattaacaatcgaatttc
gagtaccaaaatttcaaactagcagtattgtataagggttgcgaagcgat
ccagactccacctcaattcgcaagttgctagcaaaacaTAAGAGGCACTC
TAATGAAACCCCAAAGCAAAAGAGACAGTCTCGTAAGCCTTATAATACCC
CAAACACACAGCACAATCCACGGCGTCACAACACCCCtgcacaagtgttt
caaccggtattccaacgaagtcatattttggtttgtacagaaattttgcc
cgctcaaatcaaaacaacaaaatggtcaatctcactaaagcaaaacattg
ccgccacagcatttccctggataaaaacgtgaccatccgtgattttagac
caatgaaaacgcttcatttccccggattaaagttgtgtctacactaacac
gcgggaaatagctagaaaaagagagaaaaagagagaaaaaattcccttct
tgcggcaaacataaaaaaagactttaagaggccatttatttaagaaaggg
gtgttatatcataaataaattatgtaagtaagtgatattttaagtaacaa
gttcattaacaattttattttgaagtttgtttttaaaaacaaaacccccg
tgtTAGAtggtaatttcattttcttaacttatggacccatttggaagtat
ttgtaatatagatcatttggcagtgcagcctatacaagaattggaatcta
aagtctgaagtcgtaactccttgccagtgaccccgcagaaaaatttttag
ttggcagacactgactttaggttggtttggaaatcgttttattttgaaat
gtaatcttcctTTTAGATGaacacttttatttatttggattcatgaaagg
ttcaaggttcaaggattgttaactttttatttcattgatttttgattatt
tcattgatttattgagctgcaatagctgattgaaaaacgaagatttttga
tagttatcagcgtgggcttggccgccattttgaacttcgatttttttctc
ctgtactcagcaatttagaggttgttcgtaatacgcgatttggcttacac
GTAACACTTGTGCCCGCGTAACGCTCTTTCTTTCTAATGTAAATGGCGCC
TTAAAAATCGAACGATAGTCGTTGAACGTTCGACTGCGTTCGAACGTTTT
TATTcaaatcgtctgtcgaaattaaaacaaatcaaatcaatcaatcaaaa
caaaaagtaaaatcagATATGACTTattggttcttgggcagttttgattt
ttttttcttgacaaatacgacaaatttgattacctccgtacctCTTTATC
ATCCACTTGCTTTGCAAGGCAAGTTaagttcactaaaagagcactcatCC
CGCCCTCCCGCCCGCGCAATTTGTAAGAACCtatcattgattgaccttat
ttgatactgtACTTGATACTTGTTGATAAAGGTCAAggaatgatgaagat
cctttctgtcatctttcaaactaattgttttccatttaacagcaaaataa
acatttaaaaccgaagaaccactgttTAGATGCGTGCCCGCACGGCATTT
TGagcaacttcagattctaagttcgtctttcggcttccggtaattttttg
ctgttcattgctagggtacaccattttaaaacggcattttttcGCAGTCC
TAACTACCAtactgagaaaattttcatGGTTTTAAGCCAAGCccttcaag
gtcattttgacaaaatcatcggtttgaagatttgatttatatagcaaatt
attgcttgggatagaagttaaaggtacgtgcacacaatgtagcaaaactg
cttcgctcataaatttgcttcgcaaaaaaattgtgagtctTCGATCACTT
TCTTAATAACCCCTCGAAGACTCTATAACCGTTCcagtactttgattgtt
attgattactttcgataacttcGACAACCAATTGATTACTTCAATAATCA
GTTTGGTAAGCCAAACTTgagataaaaaaagttttattgctgacgtcagc
attttttagtgGTGTGTGTACACTCCAATATGcaatgtatgaagtgatat
gattagacaagtggaaacggtgataaaaaactTATTGTATAATTTACAAG
TTgttagcaaaataagagacactcttaAAAAATCCCTAAAGTGACAGGGT
CCCAAGCAAGCCTTAATCCCCAAAACAATCGGTGGCACAACACTGCTGCC
TCTCACAGTGCTCTTCTTTTTCCTTCTAGTTCTTCtaatgtaaatggtgc
cttaaatNTCATCTTTCAAACTAATtgttttccatttaacagcaaaataa
acatttaaaaccgaagaaccactgttTAGATGCGTGCCCGCACGGCATTT
TGagcaacttcagattctaagttcgtctttcggcttccggtaattttttg
ctgttcattgctagggtacaccattttaaaacggcattttttcGCAGTCC
TAACTACCAtactgagaaaattttcatGGTTTTAAGCCAAGCccttcaag
gtcattttgacaaaatcatcggtttgaagatttgatttatatagcaaatt
attgcttgggatagaagttaaaggtacgtgcacacaatgtagcaaaactg
cttcgctcataaatttgcttcgcaaaaaaattgtgagtctTCGATCACTT
TCTTAATAACCCCTCGAAGACTCTATAACCGTTCcagtactttgattgtt
attgattactttcgataacttcGACAACCAATTGATTACTTCAATAATCA
GTTTGGTAAGCCAAACTTgagataaaaaaagttttattgctgacgtcagc
attttttagtgGTGTGTGTACACTCCAATATGcaatgtatgaagtgatat
gattAGACAAGGTGGAAATGGTGATAAAAAACTTGCCGTATTGTATAATT
TACAAGTTgttagcaaaataagagacactcttaAAAAATCCCTAAAGTGA
CAGGGTCCCAAGCAAGCCTTAATCCCCAAAACAATCGGCGGCACAACACT
GCTGCCTCTCACAGTGCTCTTCTTTTTCCTTCTAGTTCTTCtaatgtaaa
tggtgccttaaatgaaaaaatatcctttaaagggacataacagtacttgc
gaaatttgtaaacaaactgtatgcagcggatacaaaatcaaaacaaatgt
cacatgtcaaaatagaaatcaaaccaaatatggctaatttttattgttca
attgttttacaagtttgttttggacacgtgattttaatattgttctcttt
aatgacacgtggttcgcgcaatgtttacattttactacttttatgtccct
ttaaaaactttagacaatttttatttgaattgatTGTCATGTTCTCCCAA
ACAACTGATGTACAAGGGTTGCACAGCGATCGAGACTCCACCCTGTTTCG
CAATTTGCAAGCAAAATAAAGGTGTGAGACGGGGATTGATATTTGCATAA
AAAACACCCCCAAAACCTCAGAGACACAGCACAAGAAAGGAGATTAATTT
GGAAGTGTTTACTGTGGAAAGGTTgtgtgaattttttgatgtcagtgttg
attttgttggttgatggcttgttgaatctggcaagaaaaaagtaaacagc
tTTTTCTATAACCAAGGATTTGAAGGATTTGAGCCACTCtctcaataatt
ataagaataaattaacttacagggctgcaaataagcgtcggtcatcggtc
aatgtccgactgaaaaagctatttgaccgactgaaaatcttttgtgtcgg
tcatgatgtccgaatgaaaaaggaataaaccattaacttgagagttgaaa
ataaatctcttacgcccctgtctcttacttagcctattcttttaatactc
gcttcctttgtagctttcagggtgtttctaagatcacttttatcaactcg
ctttcttcttaACTATTAAGAgggtttctaagatcacttttatcaactcg
ctttcttcttaACTATTAAGAgggtttctaagatcacttttatcaactcg
ctttcttcttaACTATTAAGAgggtttctaagatcacttttatcaattcg
ctttcttcgtaactttcattcaagggtgtttcaaagttaaacttttatcg
actcgctttctttataactttcaagaatttttttaagaccattttcatca
acttgcttacttcataactttcaagagtgtttctaagctaacttttatcg
acttgctttcttcgtagctttcaagagtgtttctaagatcacttttatca
attcgctttcttcgtaactttcaagagtgtttctaagatcacttttatca
attcgctttcttcataactttcaagagcgtttctaagttaacttttatca
actcgctttcttcttaactattaagagtgtttctaagttaacttttatca
acttgctttcttcgtaacttccaaaggtgttttcttaacttttatcaact
tgctttcttcgtaactattaagagtgtttctaagttaacttttatcaact
cgctttcttcttaactattaagagtgtttctaagatcacttttatcaact
cgctttcttcttaactattaagagtgtttctaagatcacttttatcaact
cgcctTCTTCGTTActattaagagtgtttctaagatcacttttatcaact
cgctttcttcgttactattaagagtgtttctaagttaacttttatcaact
tgctttcttcgtaactattaagagtgtttctaagttaacttttatcaact
cgctttcttcttaactattaagagtgtttctaagatcacttttatcaacN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNca
ctgaatgaccgacaggattttgagtttgaccgacaggatttcatttctgt
cggacatgatgtccgattgactaaaaatatttatttgcagccctgatAGT
ATAGTagactttgagtgcttcattgaagatgaagaagtagaaagataaaa
aatgtactggttaattttgtttttaaatagatTTGTTCTACTGTTATTGA
AGCtacaaaagaaaattctaaCATTGCAGATTTTTTTTGCAGACAGTCAA
AGAGGCCCCCAagtcacctttcaaatcacgcaatcacgcaaaagaaattt
ccaaatcacgtcataacgagttaaatttcctttctatTACAATCACTTTG
GTTTCTCCAATCATGCAATCACGcacttttaaaatcttaaatcacaaAAT
CACGCACTTAAGAAAcaccaatcacgccatcacaaaAACCCTGGGGGCCT
CATTAAAGGCACAGtatgcttatacttactatgtttgctatacTGTGCTA
TATTGTCTAggtaaaaagatgtaaaaaaaagacgcaaatatttttttatg
aatgctGATATATGGCAATAATCAGTCAAAACCTACATCATACCTACATG
ACATATTATACAACCTGACTGCTGAAACAAGAATTAAATTGTattatttg
attcttttttctaGGCTTAATTTATTCAAATGGAAGCAGCAACTCAGATG
TTAAAGCGAGCTGTTGAGCTTGACACATCTAAAAAATATTCAGAATCAAA
AATTTGTTATGAAGAAGGTATAGAAATGTTGTTAAAAACCTTAACAAAAA
TGACCGATGAAAATGCTAAAAAGGTCATACGACAGAAGATTGATGGGTAC
ATGAAAAGAGctgaagaactgaaaaaatttGTCAAGAAGTTAAAGAAAGA
TGGGAAATTTcatgagaaaattgaaattgaaaataatcaaagagGCTGTA
GTTATGGAAGCCTTTTTTCTAAATTCATTGATGATAATTTGACTGTTGTT
GAGATTAAAGATGCTTACATTAGAAGTCATCATCAGATATTGAATTTATT
GAGATTTTGCGAGCTGTTGTTACGAAAAGCCAAGAACTTGAATGCCATCA
ACATTACAACAGGTAGGGTAATAAAAATTCTCATTGTTTACTTATGGGTC
AGAATCTGACAGCTGttgttttcttgacaaaatGCAAAGTGAAAACTAAA
AGTGCATAGGAAAGGCCTTTTTTTGTTCAGCAGACAAAGTACAACATTTT
CTTGCAATTTCTCTTCTAGGCAGTGATGAGAATCAACCAGAGGAACaagc
tcaaaaattaaaaaatttaacaacAAGTTTAGATTCATACAGGGTGACAT
TATCTATAAAATATGAAGACACTCTACATGATCGTGAAATATTATTTGAT
AATGGTTGGATTATCAAGATAGGTAGAGGATTGGATTATTTTAAAAGGCC
AAACGGTCCTTTCTCAATAGGATTTTGTGATATGGATTTAAGACAATGTC
ATAAAACAACCATTGACATATATGATGCACGATAAcattattttcttata
ttttttgtatTCAAAGTCactctatttattttttaactattttttcaact
tatctAATGCTATGCTATTTTAAGAATTTGTTTGtttcattatttatttt
tcaacttacttgtatttcaaaaacattatactatatttttttctttttat
aatatttgTTTCATTCTTTCATATTTACAGTGAAAATAAATTAACACCAT
GCATAAACATTTAATATTTCCAAAG

Coding sequence (CDS) from alignment at scaffold_56:283058..297332+

>TCONS_00070436 ID=TCONS_00070436|Name=TCONS_00070436|organism=Clytia hemisphaerica|type=CDS|length=1398bp|location=Sequence derived from alignment at scaffold_56:283058..297332+ (Clytia hemisphaerica)
ATGGAAGCAGCAACTCAGATGTTAAAGCGAGCTGTTGAGCTTGACACATC
TAAAAAATATTCAGAATCAAAAATTTGTTATGAAGAAGGTATAGAAATGT
TGTTAAAAACCTTAACAAAAATGACCGATGAAAATGCTAAAAAGGTCATA
CGACAGAAGATTGATGGGTACATGAAAAGAGctgaagaactgaaaaaatt
tGTCAAGAAGTTAAAGAAAGATGGGAAATTTcatgagaaaattgaaattg
aaaataatcaaagagGCTGTAGTTATGGAAGCCTTTTTTCTAAATTCATT
GATGATAATTTGACTGTTGTTGAGATTAAAGATGCTTACATTAGAAGTCA
TCATCAGATATTGAATTTATTGAGATTTTGCGAGCTGTTGTTACGAAAAG
CCAAGAACTTGAATGCCATCAACATTACAACAGGCAGTGATGAGAATCAA
CCAGAGGAACaagctcaaaaattaaaaaatttaacaacAAGTTTAGATTC
ATACAGGGTGACATTATCTATAAAATATGAAGACACTCTACATGATCGTG
AAATATTATTTGATAATGGTTGGATTATCAAGATAGGTAGAGGATTGGAT
TATTTTAAAAGGCCAAACGGTCCTTTCTCAATAGGATTTTGTGATATGGA
TTTAAGACAATGTCATAAAACAACCATTGACATATATGATGCACGATAAA
TGGAAGCAGCAACTCAGATGTTAAAGCGAGCTGTTGAGCTTGACACATCT
AAAAAATATTCAGAATCAAAAATTTGTTATGAAGAAGGTATAGAAATGTT
GTTAAAAACCTTAACAAAAATGACCGATGAAAATGCTAAAAAGGTCATAC
GACAGAAGATTGATGGGTACATGAAAAGAGctgaagaactgaaaaaattt
GTCAAGAAGTTAAAGAAAGATGGGAAATTTcatgagaaaattgaaattga
aaataatcaaagagGCTGTAGTTATGGAAGCCTTTTTTCTAAATTCATTG
ATGATAATTTGACTGTTGTTGAGATTAAAGATGCTTACATTAGAAGTCAT
CATCAGATATTGAATTTATTGAGATTTTGCGAGCTGTTGTTACGAAAAGC
CAAGAACTTGAATGCCATCAACATTACAACAGGCAGTGATGAGAATCAAC
CAGAGGAACaagctcaaaaattaaaaaatttaacaacAAGTTTAGATTCA
TACAGGGTGACATTATCTATAAAATATGAAGACACTCTACATGATCGTGA
AATATTATTTGATAATGGTTGGATTATCAAGATAGGTAGAGGATTGGATT
ATTTTAAAAGGCCAAACGGTCCTTTCTCAATAGGATTTTGTGATATGGAT
TTAAGACAATGTCATAAAACAACCATTGACATATATGATGCACGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043868XLOC_043868Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070436-proteinTCONS_00070436-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070436-exon-scaffold_56-1491911889:283058..283092TCONS_00070436-exon-scaffold_56-1491911889:283058..283092Clytia hemisphaericaexon
TCONS_00070436-exon-scaffold_56-1510915933:283058..283092TCONS_00070436-exon-scaffold_56-1510915933:283058..283092Clytia hemisphaericaexon
TCONS_00070436-exon-scaffold_56-1575043694:283058..283092TCONS_00070436-exon-scaffold_56-1575043694:283058..283092Clytia hemisphaericaexon
TCONS_00070436-exon-scaffold_56-1491911889:296222..296669TCONS_00070436-exon-scaffold_56-1491911889:296222..296669Clytia hemisphaericaexon
TCONS_00070436-exon-scaffold_56-1510915933:296222..296669TCONS_00070436-exon-scaffold_56-1510915933:296222..296669Clytia hemisphaericaexon
TCONS_00070436-exon-scaffold_56-1575043694:296222..296669TCONS_00070436-exon-scaffold_56-1575043694:296222..296669Clytia hemisphaericaexon
TCONS_00070436-exon-scaffold_56-1491911889:296827..297332TCONS_00070436-exon-scaffold_56-1491911889:296827..297332Clytia hemisphaericaexon
TCONS_00070436-exon-scaffold_56-1510915933:296827..297332TCONS_00070436-exon-scaffold_56-1510915933:296827..297332Clytia hemisphaericaexon
TCONS_00070436-exon-scaffold_56-1575043694:296827..297332TCONS_00070436-exon-scaffold_56-1575043694:296827..297332Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:283058..297332 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.5733	39.6084	18.2309	15.2161	7.66726	4.45926	7.54356	7.82863	3.94786	4.55773	4.19343	3.72595	3.44852	2.67028	3.51254	3.60319	2.76574	2.62481	2.32084	3.4911	3.69405	2.70274	29.8306	26.504	2.05105	1.83051	2.55709	2.79555	10.2987	12.1901
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007330MIT
IPR032341MIT_C
Blast
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BLAST of TCONS_00070436 vs. Swiss-Prot (Human)
Match: MITD1 (MIT domain-containing protein 1 OS=Homo sapiens GN=MITD1 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 4.001e-61
Identity = 109/231 (47.19%), Postives = 165/231 (71.43%), Query Frame = 3 
Query:   48 QMEAATQMLKRAVELDTSKKYSESKICYEEGIEMLLKTLTKMTDENAKKVIRQKIDGYMKRAEELXXXXXXXXXXXXFHEKIEIENNQRGCSYGSLFSKFIDDNLTVVEIKDAYIRSHHQIXXXXXXXXXXXRKAKNLNAINITTGSDEN-QPEEQAQKLKNLTTSLDSYRVTLSIKYEDTLHDREILFDNGWIIKIGRGLDYFKRPNGPFSIGFCDMDLRQCHKTTIDIY 737
            Q  AA  +LKRAVELD+  +Y ++ +CY+EGI++LL+ L    D   +  +R+KI  YM RAE +KK++ + K+DGK+H++I+IE N  G SY SLF +++++ +T V I+D YIR  HQ+ N LRFCE+L+++   +  I++ T  DE  +  +Q++ L+ +  SL S+ V L ++Y  ++HDREI F+NGW+IKIGRGLDYFK+P   FS+G+CD DLR CH+TT+DI+
Sbjct:   11 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQEKEDGKYHKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGWMIKIGRGLDYFKKPQSRFSLGYCDFDLRPCHETTVDIF 241
The following BLAST results are available for this feature:
BLAST of TCONS_00070436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MITD14.001e-6147.19MIT domain-containing protein 1 OS=Homo sapiens GN... [more]
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