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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070422 ID=TCONS_00070422|Name=TCONS_00070422|organism=Clytia hemisphaerica|type=transcript|length=842bp
AAATGTAAAGAAAAGTTTGTGAATTTTCAGTCTGATAATGACCTTCACCA
CTAGGATAGGGTTTTTAAATATTACTTTCATTCTGATTTGTAAAGAACAA
CAATAAATATGTataaaaatcaaagtttttattcttataaaaatgaacCT
GAGAGTTAATGATGTCATTTGTTatagaatattttcaaagacaacGATTT
TAATATGTTCTAATCAAACATCTTTTTTACCAACCACAATGGAATCATTT
CTAAAGACACATTGTAGAGATGACATACCTTACGGTTACTGTAATATTGG
GAACATTTGTTATTTGTTTACACAACTAATTGGTTTTGCAGCAATTCTAC
CACAAATTCACCAGATATGGATGTATCAATCAGTGGATGCCTTACACATT
TTGTGGCCAACTTTACTATTCACTTCATCTTTGACGGcagtattttatgt
ttttgattttgaaaagagAGCATTCTTTAAAGCTTCTGCTGTATATTTTC
CAATTGTCTATTTTCTATTCCTGGCTGAATTCTGGATCTTTAATAAAAAG
AATCCACAAAAGAGATTACTTTTTACAGCTGTTATTGCCATTGTATGGGC
TTGTATTTTGGTTGTTGAACTCACTGTACCTGATGGTCCGATGAAACTGC
AATGGGTGAATGTTATTCTCTACTCAATCAAAATCCTACCACAGGTTTGT
GTAAAATAATTTCTAAATCCACCATGTTagaaattgttttttcattGATG
ACAGGTTTTTTCttctataagcataacgtttttTGGAATTTAAGCAATGG
CTCTgttgtttaagaacaatataatgctaagcataatgagag Run BLAST on NCBI protein sequence of TCONS_00070422-protein >TCONS_00070422-protein ID=TCONS_00070422-protein|Name=TCONS_00070422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MNLRVNDVICYRIFSKTTILICSNQTSFLPTTMESFLKTHCRDDIPYGYC
NIGNICYLFTQLIGFAAILPQIHQIWMYQSVDALHILWPTLLFTSSLTAV
FYVFDFEKRAFFKASAVYFPIVYFLFLAEFWIFNKKNPQKRLLFTAVIAI
VWACILVVELTVPDGPMKLQWVNVILYSIKILPQVCVK Run BLAST on NCBI transcript from alignment at scaffold_55:258502..259343 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070422 ID=TCONS_00070422|Name=TCONS_00070422|organism=Clytia hemisphaerica|type=transcript|length=842bp|location=Sequence derived from alignment at scaffold_55:258502..259343 (Clytia hemisphaerica)
ctctcattatgcttagcattatattgttcttaaacaacAGAGCCATTGCT
TAAATTCCAaaaaacgttatgcttatagaaGAAAAAACCTGTCATCaatg
aaaaaacaatttctAACATGGTGGATTTAGAAATTATTTTACACAAACCT
GTGGTAGGATTTTGATTGAGTAGAGAATAACATTCACCCATTGCAGTTTC
ATCGGACCATCAGGTACAGTGAGTTCAACAACCAAAATACAAGCCCATAC
AATGGCAATAACAGCTGTAAAAAGTAATCTCTTTTGTGGATTCTTTTTAT
TAAAGATCCAGAATTCAGCCAGGAATAGAAAATAGACAATTGGAAAATAT
ACAGCAGAAGCTTTAAAGAATGCTctcttttcaaaatcaaaaacataaaa
tactgCCGTCAAAGATGAAGTGAATAGTAAAGTTGGCCACAAAATGTGTA
AGGCATCCACTGATTGATACATCCATATCTGGTGAATTTGTGGTAGAATT
GCTGCAAAACCAATTAGTTGTGTAAACAAATAACAAATGTTCCCAATATT
ACAGTAACCGTAAGGTATGTCATCTCTACAATGTGTCTTTAGAAATGATT
CCATTGTGGTTGGTAAAAAAGATGTTTGATTAGAACATATTAAAATCgtt
gtctttgaaaatattctatAACAAATGACATCATTAACTCTCAGgttcat
ttttataagaataaaaactttgatttttatACATATTTATTGTTGTTCTT
TACAAATCAGAATGAAAGTAATATTTAAAAACCCTATCCTAGTGGTGAAG
GTCATTATCAGACTGAAAATTCACAAACTTTTCTTTACATTT Coding sequence (CDS) from alignment at scaffold_55:258502..259343 >TCONS_00070422 ID=TCONS_00070422|Name=TCONS_00070422|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_55:258502..259343 (Clytia hemisphaerica)
TTATTTTACACAAACCTGTGGTAGGATTTTGATTGAGTAGAGAATAACAT
TCACCCATTGCAGTTTCATCGGACCATCAGGTACAGTGAGTTCAACAACC
AAAATACAAGCCCATACAATGGCAATAACAGCTGTAAAAAGTAATCTCTT
TTGTGGATTCTTTTTATTAAAGATCCAGAATTCAGCCAGGAATAGAAAAT
AGACAATTGGAAAATATACAGCAGAAGCTTTAAAGAATGCTctcttttca
aaatcaaaaacataaaatactgCCGTCAAAGATGAAGTGAATAGTAAAGT
TGGCCACAAAATGTGTAAGGCATCCACTGATTGATACATCCATATCTGGT
GAATTTGTGGTAGAATTGCTGCAAAACCAATTAGTTGTGTAAACAAATAA
CAAATGTTCCCAATATTACAGTAACCGTAAGGTATGTCATCTCTACAATG
TGTCTTTAGAAATGATTCCATTGTGGTTGGTAAAAAAGATGTTTGATTAG
AACATATTAAAATCgttgtctttgaaaatattctatAACAAATGACATCA
TTAACTCTCAGgttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070422-exon-scaffold_55-1491911889:258502..259343 | TCONS_00070422-exon-scaffold_55-1491911889:258502..259343 | Clytia hemisphaerica | exon |
| TCONS_00070422-exon-scaffold_55-1510915933:258502..259343 | TCONS_00070422-exon-scaffold_55-1510915933:258502..259343 | Clytia hemisphaerica | exon |
| TCONS_00070422-exon-scaffold_55-1575043694:258502..259343 | TCONS_00070422-exon-scaffold_55-1575043694:258502..259343 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_55 | supercontig | scaffold_55:258502..259343 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006603 | PQ-loop_rpt |
Blast
The following BLAST results are available for this feature:
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