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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070419 ID=TCONS_00070419|Name=TCONS_00070419|organism=Clytia hemisphaerica|type=transcript|length=1443bp
agaTTAGATTACAATGCTCAACAACTCTCTCCTGGGTGGCAGCATCACTA
CCAGGCGGATTGTCAAAGAATCAAGGGAGAAAAAGAAGCTGGCAAAAGCG
CTATCCTCTTCAGAGAGTGAGTCTAAAAGTAAGAACAAAGATAAAACCGT
GAACaaggagaagaaaaagaagagacGCTCTTTATCCTTCGGTTTGTTtt
cttataaattttcaaaacagtCGAATGTCGAAAGTGACCAGCAGGAGACT
TCATATAAAAGCACACGAAAATCAAGCAATGAGCACCAACATTCGAAAGC
TAAACATTACAAGCAGCATACAACGAGTTATAGCAACCCTACGACACCAA
GTGATTCTCGAAAGACGATCACTTCATCAAACGGTGCCAGTCGATCGCCA
AAGCTGACCAATAAAGCATACCGCAACTTCAACTCATCATTCGAGAAGGC
GGCTTTGTTTGGTCAACCAGATACTCCACCAATACAAAATGAGACCGACT
ACGATCCCGGATACCGACCATTTCCGATGAGACATCAAGAATCAACACAA
TCCAATATCTCTAATCGATCGATACCGACCATTTTGATTAATGGCGAAGC
TTGGAATGGAGTGACTGACATCTCTGGCGATGAAGGCGATGGTTCTGACG
AATCAAACCCACTGGCAAGTGTTGGCAGCAATGGCATCGCGCTTACTGGT
ACAACAGAATGCATGGCTGGAGGTATGGGACTACGTGAAGGTTTCGTCGA
TAGTGAGAACACTTTCTTTATCGAAACGGAAGAACCGTTTGATAATTGTT
TACTAAAAGTTGAGATTCGTGGACCTAAACAGAATCCGATAAAGATCACA
ACACACCTTTTGGATGATAATCTGTGTAGCTTTAGTTATTGGCCGCGACG
TATTGGTTATTACATGATTAGTGTCAAATGGAAGGGTGAAAACATTATTG
GTAGTCCCTTCGATGTTGGTATTATGTTACGTAAGACCAATGGAATACTT
CATAAGAGACACTAAAGAAGTGTTATGaagatttttcatcatttttcaca
gGTCAGAGTTCGATTCTGGAGTCACAAAGACCTGAACGAAGAAGAATTCA
GGAGAACGCGATATCATCGGCTCAAGTCAGTGCAATATTTattatagaaa
tattttgaccgagttttttttgttaaagttaCAAAATTATCAACAGCACA
TGATAATAAAGCTGCTTAAAGTTATGAGAAAGCCGAAAGCTAGACAACGT
TTGACGGTTAGATGATTGATGGCAAAACCAAAATATCAACAGatatcaaa
cattttttaaagactttttttaaaagcagAAAATCGTATAAACTTGAGAA
AGTGAATATtgcttcaataaaaacaatggtATTTCGAGGGGCTTATGCAA
GATAATTACGGCGTATATATGAGAAAAAACTGCGAAATATTCT Run BLAST on NCBI protein sequence of TCONS_00070419-protein >TCONS_00070419-protein ID=TCONS_00070419-protein|Name=TCONS_00070419-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MLNNSLLGGSITTRRIVKESREKKKLAKALSSSESESKSKNKDKTVNKEK
KKKRRSLSFGLFSYKFSKQSNVESDQQETSYKSTRKSSNEHQHSKAKHYK
QHTTSYSNPTTPSDSRKTITSSNGASRSPKLTNKAYRNFNSSFEKAALFG
QPDTPPIQNETDYDPGYRPFPMRHQESTQSNISNRSIPTILINGEAWNGV
TDISGDEGDGSDESNPLASVGSNGIALTGTTECMAGGMGLREGFVDSENT
FFIETEEPFDNCLLKVEIRGPKQNPIKITTHLLDDNLCSFSYWPRRIGYY
MISVKWKGENIIGSPFDVGIMLRKTNGILHKRH Run BLAST on NCBI transcript from alignment at scaffold_55:225789..227231 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070419 ID=TCONS_00070419|Name=TCONS_00070419|organism=Clytia hemisphaerica|type=transcript|length=1443bp|location=Sequence derived from alignment at scaffold_55:225789..227231 (Clytia hemisphaerica)
AGAATATTTCGCAGTTTTTTCTCATATATACGCCGTAATTATCTTGCATA
AGCCCCTCGAAATaccattgtttttattgaagcaATATTCACTTTCTCAA
GTTTATACGATTTTctgcttttaaaaaaagtctttaaaaaatgtttgata
tCTGTTGATATTTTGGTTTTGCCATCAATCATCTAACCGTCAAACGTTGT
CTAGCTTTCGGCTTTCTCATAACTTTAAGCAGCTTTATTATCATGTGCTG
TTGATAATTTTGtaactttaacaaaaaaaactcggtcaaaatatttctat
aatAAATATTGCACTGACTTGAGCCGATGATATCGCGTTCTCCTGAATTC
TTCTTCGTTCAGGTCTTTGTGACTCCAGAATCGAACTCTGACctgtgaaa
aatgatgaaaaatcttCATAACACTTCTTTAGTGTCTCTTATGAAGTATT
CCATTGGTCTTACGTAACATAATACCAACATCGAAGGGACTACCAATAAT
GTTTTCACCCTTCCATTTGACACTAATCATGTAATAACCAATACGTCGCG
GCCAATAACTAAAGCTACACAGATTATCATCCAAAAGGTGTGTTGTGATC
TTTATCGGATTCTGTTTAGGTCCACGAATCTCAACTTTTAGTAAACAATT
ATCAAACGGTTCTTCCGTTTCGATAAAGAAAGTGTTCTCACTATCGACGA
AACCTTCACGTAGTCCCATACCTCCAGCCATGCATTCTGTTGTACCAGTA
AGCGCGATGCCATTGCTGCCAACACTTGCCAGTGGGTTTGATTCGTCAGA
ACCATCGCCTTCATCGCCAGAGATGTCAGTCACTCCATTCCAAGCTTCGC
CATTAATCAAAATGGTCGGTATCGATCGATTAGAGATATTGGATTGTGTT
GATTCTTGATGTCTCATCGGAAATGGTCGGTATCCGGGATCGTAGTCGGT
CTCATTTTGTATTGGTGGAGTATCTGGTTGACCAAACAAAGCCGCCTTCT
CGAATGATGAGTTGAAGTTGCGGTATGCTTTATTGGTCAGCTTTGGCGAT
CGACTGGCACCGTTTGATGAAGTGATCGTCTTTCGAGAATCACTTGGTGT
CGTAGGGTTGCTATAACTCGTTGTATGCTGCTTGTAATGTTTAGCTTTCG
AATGTTGGTGCTCATTGCTTGATTTTCGTGTGCTTTTATATGAAGTCTCC
TGCTGGTCACTTTCGACATTCGactgttttgaaaatttataagaaAACAA
ACCGAAGGATAAAGAGCgtctcttctttttcttctccttGTTCACGGTTT
TATCTTTGTTCTTACTTTTAGACTCACTCTCTGAAGAGGATAGCGCTTTT
GCCAGCTTCTTTTTCTCCCTTGATTCTTTGACAATCCGCCTGGTAGTGAT
GCTGCCACCCAGGAGAGAGTTGTTGAGCATTGTAATCTAAtct Coding sequence (CDS) from alignment at scaffold_55:225789..227231 >TCONS_00070419 ID=TCONS_00070419|Name=TCONS_00070419|organism=Clytia hemisphaerica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_55:225789..227231 (Clytia hemisphaerica)
TTAGTGTCTCTTATGAAGTATTCCATTGGTCTTACGTAACATAATACCAA
CATCGAAGGGACTACCAATAATGTTTTCACCCTTCCATTTGACACTAATC
ATGTAATAACCAATACGTCGCGGCCAATAACTAAAGCTACACAGATTATC
ATCCAAAAGGTGTGTTGTGATCTTTATCGGATTCTGTTTAGGTCCACGAA
TCTCAACTTTTAGTAAACAATTATCAAACGGTTCTTCCGTTTCGATAAAG
AAAGTGTTCTCACTATCGACGAAACCTTCACGTAGTCCCATACCTCCAGC
CATGCATTCTGTTGTACCAGTAAGCGCGATGCCATTGCTGCCAACACTTG
CCAGTGGGTTTGATTCGTCAGAACCATCGCCTTCATCGCCAGAGATGTCA
GTCACTCCATTCCAAGCTTCGCCATTAATCAAAATGGTCGGTATCGATCG
ATTAGAGATATTGGATTGTGTTGATTCTTGATGTCTCATCGGAAATGGTC
GGTATCCGGGATCGTAGTCGGTCTCATTTTGTATTGGTGGAGTATCTGGT
TGACCAAACAAAGCCGCCTTCTCGAATGATGAGTTGAAGTTGCGGTATGC
TTTATTGGTCAGCTTTGGCGATCGACTGGCACCGTTTGATGAAGTGATCG
TCTTTCGAGAATCACTTGGTGTCGTAGGGTTGCTATAACTCGTTGTATGC
TGCTTGTAATGTTTAGCTTTCGAATGTTGGTGCTCATTGCTTGATTTTCG
TGTGCTTTTATATGAAGTCTCCTGCTGGTCACTTTCGACATTCGactgtt
ttgaaaatttataagaaAACAAACCGAAGGATAAAGAGCgtctcttcttt
ttcttctccttGTTCACGGTTTTATCTTTGTTCTTACTTTTAGACTCACT
CTCTGAAGAGGATAGCGCTTTTGCCAGCTTCTTTTTCTCCCTTGATTCTT
TGACAATCCGCCTGGTAGTGATGCTGCCACCCAGGAGAGAGTTGTTGAGC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070419-exon-scaffold_55-1491911889:225789..227231 | TCONS_00070419-exon-scaffold_55-1491911889:225789..227231 | Clytia hemisphaerica | exon |
| TCONS_00070419-exon-scaffold_55-1510915933:225789..227231 | TCONS_00070419-exon-scaffold_55-1510915933:225789..227231 | Clytia hemisphaerica | exon |
| TCONS_00070419-exon-scaffold_55-1575043694:225789..227231 | TCONS_00070419-exon-scaffold_55-1575043694:225789..227231 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_55 | supercontig | scaffold_55:225789..227231 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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