|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070414 ID=TCONS_00070414|Name=TCONS_00070414|organism=Clytia hemisphaerica|type=transcript|length=3209bp
CTTTAATCCTAACCAGAagcagatttaaaaaaagactCCATGAACAGAAG
TGAAAATGACAAATTATAGTTTTAATAAAGATTCAAGTTTTATAATACAC
TATACACTATCTACAGTGTGTTGACAGTACACCATTTCTATTAAAGAtac
atttaaaaatagaaattaagaataaataatatcaaaaaattaaatttcaa
gagATACCTATCACGTTGTTGAAATAGTTTAAccataatagaaaaaaaac
tttccatGAGATCTCGAAGAAAACTTAATCAAGTTAAAAGAGAACTTCAC
AATACAAAAACTTGCTCATGGtcaaaatgttcaaagtttgtgataaattt
caaaacaccACAAACAAGATTTGAAAGTTGATATCAAACACCCACCAACT
CTTTCataaactttcttttcaaaaaatgaaacgtTTGCCTTAAGATTTCA
TGAATAGATTTCTTTATAATAGTAAGCTGAACTTGATACTTGCTTGGTCC
TATTCgtgaaaaattcattcaaaaaaaacACTACACAAAAATTCAGTTAT
TGCTAATCTCAAGCCAAACACGATATTCATAAACAGGAAtcataataaaa
atatcaaacaaacaaaaagaaagccccaaaatcaaacaaagtctGAGATT
TTATTACACACCATCAAAACCCTTTAATGTGAGAAAATGATTGCAAATTC
ATAGTGCCTCTTAACcctttacaaaaaaattataaagagaaaaaaagctC
TATAAAATGGACATAATAAACTGTTATACAAAGAAAAGCCTTTTTTGATG
TCTATACCACAACCTTGAATTTTGACAGAAGAGAGTAATGACAATAGAAT
CGTTACTTAGCTTGAATGGTGAGAGTTGTCAGATTGTAAATCAAAACCTT
ACTATGAAGAAAGGGAAATCATGTTATTATTCTTTTTATGCTGTAGACAG
GTTGCAAAAACATTCTATAGCTAGTTGTATACACCTCTACGTAACCTGAG
CTGAGCTTACATTACGCAGTGTAAGGCATTTAAAATAAAGTTGcttttct
caaaacaaaacaacacattaaaagaaaaacgagaatttttttacataaat
ataaaagtaaaagaaaagccTTTGAGCACTACTCTAAAGAGTAAAAAACT
TTCAGGaccaatttcaaaacaaaacctagATTAACatgtttgtaaacatt
tttCAGACTCAAAAGAGGATTTAACTGTAATCCAAAAGAGGATCTTTCAA
ATCCTTTTTACAGACGTTTTGATATTTTCCTCCAAAAATGATTCAAATTA
CACCTCAAGTAAAATTTCATTAACCGTCATTTTGTCACTACTACACTATT
ATACCACATTCAACAATCAAAGAAGTAATGATTCAATAAGAGAAAATAGC
ATGAATAGGAAAGCAATAAAAACTATAATTAAATCCATTGTTAAGACGAA
AATTCCTATCATTGATGGATGGAGAAAAAATGCATGCTTATAACCATAAT
CTAGTAAAAAAACACATACTTTGTTGTCTATAATAAATAGATAAACCGTC
TGATAAATTAAACGTAATAAAAATGATATAAATAAAGACTCCTATAAAAC
GAAGattgaatcatttttcaaaaaacattaaGCATTACATTTTCCATATT
GCATAAACTATTTACATGAGATTTGATCAAGAGCCCTTCAGTCAAAACAT
GATTTCAAAtctaatcgtcagccgtgcaaaattactcgaatctgattggt
ttagaggagtgcaattaatcgttaattgcactattaccactttttgcact
cttcggcgggaggacacttttgtccccttattcttttctctcccaagtcc
tgtgtcagagacttttttttactatataataaaaaacaaagacatttttt
ttgttcaatataaaaaagaacaaagaaattttacgttacaatagcttctt
ttaattgaaaacaaagaattcgaatgtcaaaagttttccctttttctgaa
aatctatgatttactaatgattatttactgacgattacctgggaatcgta
tgttttgtcgtgcaattaacgattaatcactcgtaacaaaggagaaaata
ccgtaatttgcactcgtccttcggactcgtgcaaattactattttctcct
ttgttactcgtgattaatcgttaattgcactccaaaccatacgattacta
gtactaacgACTCATAGAAAAAAGATGTACAAGCACTTTTTCATAATATT
CGTTAATAATAAACGCACGTAATTCGTAGCTCATTTAGACGAAGCAATTA
ACTAATTTCCTTTCCCTCTAATGGTTATTACAAATGATCATTAGGAGAAT
GGGTTACAGGCTAAAGGTTAGAAAGCTAAGGTAAAGAGGTAGCAcgtgat
caaatcaaaatagaTCACATCAGACATATGTACTTTTAAGAAGTCAATCA
GAAGAGTACACTATGATTTATTATATTCACTactatcattttattctttc
CTTGTGCTGAATTTTAAAGGAAATAGCTGGATACTGCTAAGAAAAAGGGA
AACACAGAGATTGTAGAACACTGgaaatggaaaattgaaaaaagaagact
tttatttgttaaataataaaaacaacaagaatCGATACCAGGCTAGCTCC
AAAAGAATTTCTAATAAAATGATCAACACCTTTTCCTTCAATGCGTTTCA
TCAATTCCATCGGTTTCCGTGACCAAAGCGCATTCCAAAATCACGCGACC
TTCTTTATATCTTTGTTCTTCTTCTGTAGCATACTCATAAATCCAACCTA
ACTTGGCATCACAATTTTTACAGGAGACATCACGTACCATGTGACGACCA
GTTAACATTACACGGTTTTGCACTTCGCTGTATGTAAGATTAACCACCTT
GTGGAAAAGGAATGCACGCCCTGTGGCACCAGTGAATCGCATAGATATCA
ATTGGTTACGATTTGTCAGTACTGTATCACAATTAGCACATGAAAAAACT
CTAGAGCCACCAGGATGTTCCAAAAACACTCTCCCCATGACAACCAaaga
caaaaaaacaattcaataaatatcaataaaaaaacCAAAAGCCAAAACCa
agtttttattatatttatttcttttacCTTTTACCTAAAAAGAGAAACGA
TAATCTTAGGGGCTTTTTAATATTTATGTAAGAGCTTATGCTGCATAGTT
TTACCATAT Run BLAST on NCBI protein sequence of TCONS_00070414-protein >TCONS_00070414-protein ID=TCONS_00070414-protein|Name=TCONS_00070414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MGRVFLEHPGGSRVFSCANCDTVLTNRNQLISMRFTGATGRAFLFHKVVN
LTYSEVQNRVMLTGRHMVRDVSCKNCDAKLGWIYEYATEEEQRYKEGRVI
LECALVTETDGIDETH Run BLAST on NCBI transcript from alignment at scaffold_55:119237..122445 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070414 ID=TCONS_00070414|Name=TCONS_00070414|organism=Clytia hemisphaerica|type=transcript|length=3209bp|location=Sequence derived from alignment at scaffold_55:119237..122445 (Clytia hemisphaerica)
ATATGGTAAAACTATGCAGCATAAGCTCTTACATAAATATTAAAAAGCCC
CTAAGATTATCGTTTCTCTTTTTAGGTAAAAGgtaaaagaaataaatata
ataaaaacttGGTTTTGGCTTTTGgtttttttattgatatttattgaatt
gtttttttgtcttTGGTTGTCATGGGGAGAGTGTTTTTGGAACATCCTGG
TGGCTCTAGAGTTTTTTCATGTGCTAATTGTGATACAGTACTGACAAATC
GTAACCAATTGATATCTATGCGATTCACTGGTGCCACAGGGCGTGCATTC
CTTTTCCACAAGGTGGTTAATCTTACATACAGCGAAGTGCAAAACCGTGT
AATGTTAACTGGTCGTCACATGGTACGTGATGTCTCCTGTAAAAATTGTG
ATGCCAAGTTAGGTTGGATTTATGAGTATGCTACAGAAGAAGAACAAAGA
TATAAAGAAGGTCGCGTGATTTTGGAATGCGCTTTGGTCACGGAAACCGA
TGGAATTGATGAAACGCATTGAAGGAAAAGGTGTTGATCATTTTATTAGA
AATTCTTTTGGAGCTAGCCTGGTATCGattcttgttgtttttattattta
acaaataaaagtcttcttttttcaattttccatttcCAGTGTTCTACAAT
CTCTGTGTTTCCCTTTTTCTTAGCAGTATCCAGCTATTTCCTTTAAAATT
CAGCACAAGgaaagaataaaatgatagtAGTGAATATAATAAATCATAGT
GTACTCTTCTGATTGACTTCTTAAAAGTACATATGTCTGATGTGAtctat
tttgatttgatcacgTGCTACCTCTTTACCTTAGCTTTCTAACCTTTAGC
CTGTAACCCATTCTCCTAATGATCATTTGTAATAACCATTAGAGGGAAAG
GAAATTAGTTAATTGCTTCGTCTAAATGAGCTACGAATTACGTGCGTTTA
TTATTAACGAATATTATGAAAAAGTGCTTGTACATCTTTTTTCTATGAGT
cgttagtactagtaatcgtatggtttggagtgcaattaacgattaatcac
gagtaacaaaggagaaaatagtaatttgcacgagtccgaaggacgagtgc
aaattacggtattttctcctttgttacgagtgattaatcgttaattgcac
gacaaaacatacgattcccaggtaatcgtcagtaaataatcattagtaaa
tcatagattttcagaaaaagggaaaacttttgacattcgaattctttgtt
ttcaattaaaagaagctattgtaacgtaaaatttctttgttcttttttat
attgaacaaaaaaaatgtctttgttttttattatatagtaaaaaaaagtc
tctgacacaggacttgggagagaaaagaataaggggacaaaagtgtcctc
ccgccgaagagtgcaaaaagtggtaatagtgcaattaacgattaattgca
ctcctctaaaccaatcagattcgagtaattttgcacggctgacgattaga
TTTGAAATCATGTTTTGACTGAAGGGCTCTTGATCAAATCTCATGTAAAT
AGTTTATGCAATATGGAAAATGTAATGCttaatgttttttgaaaaatgat
tcaatCTTCGTTTTATAGGAGTCTTTATTTATATCATTTTTATTACGTTT
AATTTATCAGACGGTTTATCTATTTATTATAGACAACAAAGTATGTGTTT
TTTTACTAGATTATGGTTATAAGCATGCATTTTTTCTCCATCCATCAATG
ATAGGAATTTTCGTCTTAACAATGGATTTAATTATAGTTTTTATTGCTTT
CCTATTCATGCTATTTTCTCTTATTGAATCATTACTTCTTTGATTGTTGA
ATGTGGTATAATAGTGTAGTAGTGACAAAATGACGGTTAATGAAATTTTA
CTTGAGGTGTAATTTGAATCATTTTTGGAGGAAAATATCAAAACGTCTGT
AAAAAGGATTTGAAAGATCCTCTTTTGGATTACAGTTAAATCCTCTTTTG
AGTCTGaaaaatgtttacaaacatGTTAATctaggttttgttttgaaatt
ggtCCTGAAAGTTTTTTACTCTTTAGAGTAGTGCTCAAAggcttttcttt
tacttttatatttatgtaaaaaaattctcgtttttcttttaatgtgttgt
tttgttttgagaaaagCAACTTTATTTTAAATGCCTTACACTGCGTAATG
TAAGCTCAGCTCAGGTTACGTAGAGGTGTATACAACTAGCTATAGAATGT
TTTTGCAACCTGTCTACAGCATAAAAAGAATAATAACATGATTTCCCTTT
CTTCATAGTAAGGTTTTGATTTACAATCTGACAACTCTCACCATTCAAGC
TAAGTAACGATTCTATTGTCATTACTCTCTTCTGTCAAAATTCAAGGTTG
TGGTATAGACATCAAAAAAGGCTTTTCTTTGTATAACAGTTTATTATGTC
CATTTTATAGagctttttttctctttataatttttttgtaaaggGTTAAG
AGGCACTATGAATTTGCAATCATTTTCTCACATTAAAGGGTTTTGATGGT
GTGTAATAAAATCTCagactttgtttgattttggggctttctttttgttt
gtttgatatttttattatgaTTCCTGTTTATGAATATCGTGTTTGGCTTG
AGATTAGCAATAACTGAATTTTTGTGTAGTgttttttttgaatgaatttt
tcacGAATAGGACCAAGCAAGTATCAAGTTCAGCTTACTATTATAAAGAA
ATCTATTCATGAAATCTTAAGGCAAacgtttcattttttgaaaagaaagt
ttatGAAAGAGTTGGTGGGTGTTTGATATCAACTTTCAAATCTTGTTTGT
ggtgttttgaaatttatcacaaactttgaacattttgaCCATGAGCAAGT
TTTTGTATTGTGAAGTTCTCTTTTAACTTGATTAAGTTTTCTTCGAGATC
TCatggaaagttttttttctattatggTTAAACTATTTCAACAACGTGAT
AGGTATctcttgaaatttaattttttgatattatttattcttaatttcta
tttttaaatgtaTCTTTAATAGAAATGGTGTACTGTCAACACACTGTAGA
TAGTGTATAGTGTATTATAAAACTTGAATCTTTATTAAAACTATAATTTG
TCATTTTCACTTCTGTTCATGGagtctttttttaaatctgctTCTGGTTA
GGATTAAAG Coding sequence (CDS) from alignment at scaffold_55:119237..122445 >TCONS_00070414 ID=TCONS_00070414|Name=TCONS_00070414|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_55:119237..122445 (Clytia hemisphaerica)
ATGGGGAGAGTGTTTTTGGAACATCCTGGTGGCTCTAGAGTTTTTTCATG
TGCTAATTGTGATACAGTACTGACAAATCGTAACCAATTGATATCTATGC
GATTCACTGGTGCCACAGGGCGTGCATTCCTTTTCCACAAGGTGGTTAAT
CTTACATACAGCGAAGTGCAAAACCGTGTAATGTTAACTGGTCGTCACAT
GGTACGTGATGTCTCCTGTAAAAATTGTGATGCCAAGTTAGGTTGGATTT
ATGAGTATGCTACAGAAGAAGAACAAAGATATAAAGAAGGTCGCGTGATT
TTGGAATGCGCTTTGGTCACGGAAACCGATGGAATTGATGAAACGCATTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070414-exon-scaffold_55-1491911889:119237..122445 | TCONS_00070414-exon-scaffold_55-1491911889:119237..122445 | Clytia hemisphaerica | exon |
| TCONS_00070414-exon-scaffold_55-1510915933:119237..122445 | TCONS_00070414-exon-scaffold_55-1510915933:119237..122445 | Clytia hemisphaerica | exon |
| TCONS_00070414-exon-scaffold_55-1575043694:119237..122445 | TCONS_00070414-exon-scaffold_55-1575043694:119237..122445 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_55 | supercontig | scaffold_55:119237..122445 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070414 vs. Swiss-Prot (Human)
Match: YPEL5 (Protein yippee-like 5 OS=Homo sapiens GN=YPEL5 PE=1 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 2.085e-58 Identity = 91/114 (79.82%), Postives = 107/114 (93.86%), Query Frame = -1
Query: 2697 MGRVFLEHPGGSRVFSCANCDTVLTNRNQLISMRFTGATGRAFLFHKVVNLTYSEVQNRVMLTGRHMVRDVSCKNCDAKLGWIYEYATEEEQRYKEGRVILECALVTETDGIDE 3038
MGR+FL+H GG+R+FSCANCDT+LTNR++LIS RFTGATGRAFLF+KVVNL YSEVQ+RVMLTGRHMVRDVSCKNC++KLGWIYE+ATE+ QRYKEGRVILE ALV E++G +E
Sbjct: 1 MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESEGFEE 114
The following BLAST results are available for this feature:
|
