TCONS_00070413 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070413
Unique NameTCONS_00070413
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070413 ID=TCONS_00070413|Name=TCONS_00070413|organism=Clytia hemisphaerica|type=transcript|length=390bp
GCtaccattttattttagtatATTTGGCCAACTGAGGTCATGCTCTCAAA
CCATGTTGTTTTTTGTTGCCTTGACAACTTGGTGCATCAAGTGTATTTAA
GGCTTAAAGGCATTCAGCTTCTCACTTGACTCATGACAGCCATGGAGTAA
GGACCTCAGCTCCAGACTTGAGTCACTTACAAGTCAATTCAAATAAACAT
AAACTCAATTCATTCAACAACTGAAGACAAGTCATAGTCTCAGTTTTGTT
TTGTCTCTCACACTTACCTGTATGGCCACACCTTCACAGTTTTCATTCAT
GGCGTAACTGGTAAGtcagccatcttgtttttgcttttttcttttcacaT
TTAGGTTAAGGTTAAGTTAGACATAGACATTATATATTTA
Run BLAST on NCBI

transcript from alignment at scaffold_55:111867..112256

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070413 ID=TCONS_00070413|Name=TCONS_00070413|organism=Clytia hemisphaerica|type=transcript|length=390bp|location=Sequence derived from alignment at scaffold_55:111867..112256 (Clytia hemisphaerica)
TAAATATATAATGTCTATGTCTAACTTAACCTTAACCTAAAtgtgaaaag
aaaaaagcaaaaacaagatggctgaCTTACCAGTTACGCCATGAATGAAA
ACTGTGAAGGTGTGGCCATACAGGTAAGTGTGAGAGACAAAACAAAACTG
AGACTATGACTTGTCTTCAGTTGTTGAATGAATTGAGTTTATGTTTATTT
GAATTGACTTGTAAGTGACTCAAGTCTGGAGCTGAGGTCCTTACTCCATG
GCTGTCATGAGTCAAGTGAGAAGCTGAATGCCTTTAAGCCTTAAATACAC
TTGATGCACCAAGTTGTCAAGGCAACAAAAAACAACATGGTTTGAGAGCA
TGACCTCAGTTGGCCAAATatactaaaataaaatggtaGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043852XLOC_043852Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070413-exon-scaffold_55-1491911889:111867..112256TCONS_00070413-exon-scaffold_55-1491911889:111867..112256Clytia hemisphaericaexon
TCONS_00070413-exon-scaffold_55-1510915933:111867..112256TCONS_00070413-exon-scaffold_55-1510915933:111867..112256Clytia hemisphaericaexon
TCONS_00070413-exon-scaffold_55-1575043694:111867..112256TCONS_00070413-exon-scaffold_55-1575043694:111867..112256Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:111867..112256 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.791885	0	0	0.434252	0.859058	0.519676	0.252001	0.471841	0.208715	0.528547	0.397168	0.131587	0.704074	0.140847	0.714443	0.238885	0	0.301635	0	0.476166	0	0.281695	0	0	0	0.375638	0	0.31679	0	0.253276
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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