TCONS_00070410 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070410
Unique NameTCONS_00070410
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070410 ID=TCONS_00070410|Name=TCONS_00070410|organism=Clytia hemisphaerica|type=transcript|length=860bp
GTTTGACTTGGCTGACATTGTATCTTTTTATCGCGTATGTTTGAAACGGG
AACATGTTCTTTTCAATATAATAATCTCACAACTTTCAAAACTCTATACC
AAGGTTTTTTTAAAGCAAGACCAGCTCGCTAAAGGGTTAAATTCGCACCC
ACGATgaagagttttttttcttttgtgtcaAAAGTTTCACCGAGGATTGG
TACTCCATGATTCATAACTTGCACTCCATCGTTCAAGAGTATGTATGTAT
CCTTCCTTCCCAGATCCTCTCAGATTTATATAGATAATAAAAGAGTATAT
CTTTTGGTAATAAACTCGGTTACACAATCCAGAAATCCCATCAAAAAGAA
AACTCGATCCGCCTACTTTCTGTTCTATGACCGGTTTCCATTGATtatga
tttcttcttctttttccgaACTGGATATAAAGAACACTATGACATCTATT
TCCTTCTTGGTTTTCGCTTCTCGACcaccaaaaataagaaaacactCGTT
CACGATTTTGTGTTCCAAATTTGATCTAATTCAACACTCAACGGTGCTAT
GTAAATATCGTGGGAAATATCCGGGTGTCGGCAGCGGCGCTTGCAACCGG
ACCTCACTTTAAGACATATAAAATGTTCGTAAACATTACGTATAACGTTT
GCGCATACCATATAGTTCCCGTCGCATACGCTGGAGCATGTAAATCCAGA
ATTACTGCGTACCGATCGTGATTTTCGGACAGGTGCTGGTTGTGCGTCCG
AAATAACGCAGGtcaccaaaatcaaaacaataattgatttcatcaaaaat
gTATTATGTGCCATTATGGATTCTTCCGTTTCactgttttattattttat
ttaattttca
Run BLAST on NCBI

transcript from alignment at scaffold_55:37959..38818

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070410 ID=TCONS_00070410|Name=TCONS_00070410|organism=Clytia hemisphaerica|type=transcript|length=860bp|location=Sequence derived from alignment at scaffold_55:37959..38818 (Clytia hemisphaerica)
tgaaaattaaataaaataataaaacagtGAAACGGAAGAATCCATAATGG
CACATAATAcatttttgatgaaatcaattattgttttgattttggtgaCC
TGCGTTATTTCGGACGCACAACCAGCACCTGTCCGAAAATCACGATCGGT
ACGCAGTAATTCTGGATTTACATGCTCCAGCGTATGCGACGGGAACTATA
TGGTATGCGCAAACGTTATACGTAATGTTTACGAACATTTTATATGTCTT
AAAGTGAGGTCCGGTTGCAAGCGCCGCTGCCGACACCCGGATATTTCCCA
CGATATTTACATAGCACCGTTGAGTGTTGAATTAGATCAAATTTGGAACA
CAAAATCGTGAACGagtgttttcttatttttggtgGTCGAGAAGCGAAAA
CCAAGAAGGAAATAGATGTCATAGTGTTCTTTATATCCAGTtcggaaaaa
gaagaagaaatcataATCAATGGAAACCGGTCATAGAACAGAAAGTAGGC
GGATCGAGTTTTCTTTTTGATGGGATTTCTGGATTGTGTAACCGAGTTTA
TTACCAAAAGATATACTCTTTTATTATCTATATAAATCTGAGAGGATCTG
GGAAGGAAGGATACATACATACTCTTGAACGATGGAGTGCAAGTTATGAA
TCATGGAGTACCAATCCTCGGTGAAACTTTtgacacaaaagaaaaaaaac
tcttcATCGTGGGTGCGAATTTAACCCTTTAGCGAGCTGGTCTTGCTTTA
AAAAAACCTTGGTATAGAGTTTTGAAAGTTGTGAGATTATTATATTGAAA
AGAACATGTTCCCGTTTCAAACATACGCGATAAAAAGATACAATGTCAGC
CAAGTCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043849XLOC_043849Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070410-exon-scaffold_55-1491911889:37959..38818TCONS_00070410-exon-scaffold_55-1491911889:37959..38818Clytia hemisphaericaexon
TCONS_00070410-exon-scaffold_55-1510915933:37959..38818TCONS_00070410-exon-scaffold_55-1510915933:37959..38818Clytia hemisphaericaexon
TCONS_00070410-exon-scaffold_55-1575043694:37959..38818TCONS_00070410-exon-scaffold_55-1575043694:37959..38818Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:37959..38818 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0734927	0.0580749	0.350324	0.196782	0.0918477	0.0568841	0.441705	0	12.3594	10.6145	5.04409	9.29855	1.92281	1.2999	6.3725	3.27356	0	0	0	0.0568084	0	0	0.0747266	0.0797503	0.786341	0.862784
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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