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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070407 ID=TCONS_00070407|Name=TCONS_00070407|organism=Clytia hemisphaerica|type=transcript|length=2022bp
tttggaaaaatttgatgacgtcagcaaaaaattgcatttttcgatttttt
gcattttttgctgacgtcatcaaaattNAGTGCATTAACCATgaatgaaa
ttaaactttttcacACAGGCATCCCAGCATCAGGGATCTTGGACGAAGCT
ACGGTTGAGTTGATGAAGACACCTCGTTGTGGAGTGAAAGATGTGACAGG
AAGGTTGAGTGGTGTCAAAAGAAAGCGAAGATATACCCTTCAAGGATCCA
AATGGATGAAAAAGGATTTAACCTGGAAGTTAATCAACGACAATAACGAC
GGGTTAACACGTCAACAAGTCGAAGATGTCATGACTCAATCTTTCGATAA
ATGGCACAAAATCACCaacttgaatttcaaaaaacttgaaCACACTGATG
CCACTGAAGCTGATATTGTGGTCAAGTTTGGAGTCGGTTCCCATGGCGAT
CCTTATCACTTTGATGGACGCGGTGGAACTCTCGCGCATGCGTTTTACCC
TCACAACAATCTAGGTTTGTAAATttaaacataaactttttttttgaagt
tttcttcTTTGTTCTTCTCATCGTCATTTCGATTATGATCTTGTTGATTA
TGGGAACCTTGTCCTTGTGATCGTTAACGGTTTTGAGCAACTTTATTGAG
ATCGTTTGGTAAAATCAAAGTTTATACATCTTACATTTTTGGCTTTCCAT
TTAACTTTCACTGTATTTCTCACAAAAATCTGACGACCTGGTTTCTATTC
AATAGGACTTTCAGGGGACGTCCattttgatgatgatgaagtttACACGA
TCGGTTCATCGCAAGGAAAAAGTTTATTATGGGTTGCCGTCCACGAGATT
GGCCATTCTATTGGATTGGAACATTCGAATCTTCGTGAAGCAGTCATGTA
TCCATGGTATCGAGGAAATGGCGGACGtgattttgatttgaatgaGGATG
ATGTCATTGGAGCTCAACATATTTATGGATCAAGATCACCAGACCCAGAG
GAATCAAAaactacaacaacaaccaccCTTGCACCTGGAGAAACAACGCC
CTCCCTTCCACCCTCAGTTTGTATCAATCAATTCAAAGCCGCCATTCTCC
ACAAAAGCACTGGCAAAACGTACATCATCAACAACGGTTTCGTTTACACC
CTCGGAAAACAATTAGGAATCGAATCAGGACCGACTCCAGTGAAGGAAAT
TTTTCCGGGAGTCTCGAATATTGATTCACTTTACTACAACACTGATGAAA
ACATTGTTGTTCATGATGGTAAAAGATATTACACATTCAATGACATTAAT
GGAAGAATGATAGAATCGGGCACCATCCAAAACAAATATGgcctctctga
tgacgtcaacAAGATCGATGCCGCATTTATTTGGATTGGCAATGGACGCG
TTTATTTGTTTGTCGATAAAATGTATTATCGATTCGATGATAATCGAGCA
AGTGTCGATTATGGATATCCGCGAGTCATTAAAGACAATTGGAAAGGTTT
ATCGGAAAGTGTGGATGGAGTATCAATTTGGAGAAACAGAGTAACTTATT
TCTTTAAAGGCAATTCATACTACCGCTTCAATGATAAACGAATCCGTGTC
GAAGATAATTACCCAAGACCCATCAACCATATCTGGACGCAATGCACTGT
AGCTAAATTAAATACCCAGAATGCTTCAGTGACATCAAAAGCTTCTATTT
TGGTCACCTTTGGAATGTTGGCAATCATGAAATTCCTATTTTTGTAAAGT
GCtagatatttttaaattgtccaTTTGTTAATGtgtaaattttgataatt
tttagaCTTTCTATTTTAACATTATTTATTTTACAGTGATTTCTATAAGT
GGTAAATTATTCTTTCACATCCATATTTGTAAACGCTATTTTTAtccaaa
atctttatttttatcccattaatcaattttttatatAGTATAAGAATTGA
TAATCTTTATATACCGATTTTATTGAACATAATATCATAAAAATCATGAC
TCCAAAACTTATTTATACCtca Run BLAST on NCBI transcript from alignment at scaffold_55:365243..369450- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070407 ID=TCONS_00070407|Name=TCONS_00070407|organism=Clytia hemisphaerica|type=transcript|length=4208bp|location=Sequence derived from alignment at scaffold_55:365243..369450- (Clytia hemisphaerica)
TTTGGAAAAATTTGATGACGTCAGCAAAAAATTGCATTTTTCGATTTTTT
GCATTTTTTGCTGACGTCATCAAAATTNAGTGCATTAACCATGAATGAAA
TTAAACTTTTTCACACAGGCATCCCAGCATCAGGGATCTTGGACGAAGCT
ACGGTTGAGTTGATGAAGACACCTCGTTGTGGAGTGAAAGATGTGACAGG
AAGGTTGAGTGGTGTCAAAAGAAAGCGAAGATATACCCTTCAAGGATCCA
AATGGATGAAAAAGGTAAGAATCAGTAAGCAAACAAAATGTCTTTTAAAC
ATACATTACGATATCGCTTAGAAGGAAGAAACTCTCGTTATGATGAGATC
TTAAGAACATTATATGTTTTTTTCAATACCGAGTGGTTTTTCACGGTAAA
ATTAAATATAGGCAATAGGTAAGTGCAAGGAAAAAATTTGGTGGCAAGGG
AGTTTTGAAAATTTTTAACCAGCTACCCATCATCAACTTTGTATCAACTT
CCAGCGCAGCTCCTGGTTTAGTCAAACGGAAATTCATGCATATAGACACT
CGAGTGACTTAGGGCAAGTCTCAAAAACCTAACGGTTTACCCTAAGTTTT
CGCTACCAATAGCAGCCAGATTCAGAGATCCACTTAGGGCTCTAAAGTGC
CTCTATACCTTAAGGTTTCAGAACCCGGTTGTTACGTAATTAAATATTAA
CCTAAAAATTAATTATCAAAGAAATTGTAATCATGACATCATAATTTGGT
CGAATTTGGTGACGTCATGAATCGTATAATCGCTATAATATTAAAAATAC
ATGTCCAATCTTTCCCAAATTTGAACCAAAGATGCATCTAACTCAAATGT
AACTTTTTGAAAAAGAAAATTTGGAAAAATTTAATGACGTCAGCAAAAAA
TAGCATTTTTCGATTTTTTGCATTTTTTGCTGACGTCATCAAAATTTTCA
AAGAATTTTTTCGTTGAAAAGTTCGGCATCATTAAGATGCATCTTTGGTC
CAAATTTGAGAAAGATTCGACATGTACTGATAGAGCTAGAGCTAATTTAC
GATTTATGACGTCATAAAATGATGACGTCATAATTCACACTTTCTTTAAT
AATTAATTTTTAGGTTAATATTTAATTACGTAACAACCGGGTCCTGTAAC
CTTAAGGTATAAGTCATCTAAAAATCCATAAGTGAATCCCTGAGAATGGG
TGCTATTGGTCGCGGATTCGGGATTTGTGATTTTTAAAAATCTAGACACG
CACTAACTCACCCGAGCAATAACTTCATTCCATCTTTAGGATTTAACCTG
GAAGTTAATCAACGACAATAACGACGGGTTAACACGTCAACAAGTCGAAG
ATGTCATGACTCAATCTTTCGATAAATGGCACAAAATCACCAACTTGAAT
TTCAAAAAACTTGAACACACTGATGCCACTGAAGCTGATATTGTGGTCAA
GTTTGGAGTCGGTTCCCATGGCGATCCTTATCACTTTGATGGACGCGGTG
GAACTCTCGCGCATGCGTTTTACCCTCACAACAATCTAGGTTTGTAAATT
TAAACATAAACTTTTTTTTTGAAGTTTTCTTCTTTGTTCTTCTCATCGTC
ATTTCGATTATGATCTTGTTGATTATGGGAACCTTGTCCTTGTGATCGTT
AACGGTTTTGAGCAACTTTATTGAGATCGTTTGGTAAAATCAAAGTTTAT
ACATCTTACATTTTTGGCTTTCCATTTAACTTTCACTGTATTTCTCACAA
AAATCTGACGACCTGGTTTCTATTCAATAGGACTTTCAGGGGACGTCCAT
TTTGATGATGATGAAGTTTACACGATCGGTTCATCGCAAGGAAAAAGTTT
ATTATGGGTTGCCGTCCACGAGGTGAGTTCACTGTCAAAGTCTTTGTGAA
AGCGATCTTTATTTACACTTCAAGAAGCTTTGAATTCTCAAAAATTTACC
ATAACCACACATCGCTATTTGGTACCCTTAAAGAAAATACAGTCATGTGA
AAATATCAAATATCGCATTTATTTTAACTTGACCGATCAAAATAGGCTAA
AACAATGAAATATATTCATAAATCTTTTTAGATTGGCCATTCTATTGGAT
TGGAACATTCGAATCTTCGTGAAGCAGTCATGTATCCATGGTATCGAGGA
AATGGCGGACGTGATTTTGATTTGAATGAGGATGATGTCATTGGAGCTCA
ACATATTTATGGTAAGGTGATGTTTGGTCGTTCTAAGAAGCTTTAGTTTA
AATTAAGAGCAGGAAATAACTATGAATTGGGATGGCCAGATCAAAAATTT
AATCGCATTTTCATCTAACCAAGGAATATAATTTCAAAATTTCATAAAAA
TTAAAATATTGCATTTCTTCTAAAATTCCACTTTTCACAAATAGGATCAA
GATCACCAGACCCAGAGGAATCAAAAACTACAACAACAACCACCCTTGCA
CCTGGAGAAACAACGCCCTCCCTTCCACCCTCAGTTTGTATCAATCAATT
CAAAGCCGCCATTCTCCACAAAAGCACTGGCAAAACGTACATCATCAACA
ACGGTTTCGTTTACACCCTCGGAAAACAATTAGGAATCGAATCAGGACCG
ACTCCAGTGAAGGAAATTTTTCCGGGAGTCTCGAATATTGATTCACTTTA
CTACAACACTGATGAAAACATTGTTGTTCATGATGGTAAAAGGTAATTTT
TCAGACAATTAGCCAATTAGCCATATAATCACTGCCTTTTAATCTCTTCA
AAAGAAGTACCTTGAGCACCACAGCTCAGCTTTCCTGAAATCCAACCTGT
GGAGACGGACCATATGAGTTTTCTAATATTTATACTGACGGCACAAAAGA
AAACCTTGGTTACTTTCGCAGCTTCATTCAAAGTCAACAACTTAAATTTA
TGACATTCATGACGTAATGTTTACAGAAATACCCCGGTTTTAGCCAGTAG
TGGCACATTTAAACTAGACAAAAGTTGTATAAAATTTGCCACTACTGGCA
AAAACCGGGGCCTTTCCATAGAAAACAATACGCCATGAATATCATGAATA
GCCCTAAAAGAAATCAGCCTAATATTTCCTCATTTTTCAAAATTGACAGA
TATTACACATTCAATGACATTAATGGAAGAATGATAGAATCGGGCACCAT
CCAAAACAAATATGGCCTCTCTGATGACGTCAACAAGATCGATGCCGCAT
TTATTTGGATTGGCAATGGACGCGTTTATTTGTTTGTCGATAAAATGTAT
TATCGATTCGATGATAATCGAGCAAGTGTCGATTATGGATATCCGCGAGT
CATTAAAGACAATTGGAAAGGTTTATCGGAAAGTGTGGATGGAGTATCAA
TTTGGAGAAACAGAGTAACTTATTTCTTTAAAGGTAAGAGATGGGAGCTG
GGTTCTTAACTTAGCAAGTCTTAAACGCGCAATAAAATTTATTACAAACG
TGTTAAAAAACTTCGTGTAGTTTTAAAGTGTTTTATATAATTAACGTGAA
TTTCTAAAGTGTCTAACATTTATCCGAAAGATGAAAAATATTTCACTCTG
AGACACCATGCTCAGCTTGAGTCCACAACTATTGAATTACCAGACAAAAT
ATGATATTTGGTTATAGAGGACCATAACAGTGTAAGCTGATTTTTTAGGG
TCCTTTTACACGAAATTTTATCATTAATTTTTCAAATTACTCTAATTAAA
CCATGGCTTATATTTTGAATTCATCATATCCGTTTTTTTCATTAGGCAAT
TCATACTACCGCTTCAATGATAAACGAATCCGTGTCGAAGATAATTACCC
AAGACCCATCAACCATATCTGGACGCAATGCACTGTAGCTAAATTAAATA
CCCAGAATGCTTCAGTGACATCAAAAGCTTCTATTTTGGTCACCTTTGGA
ATGTTGGCAATCATGAAATTCCTATTTTTGTAAAGTGCTAGATATTTTTA
AATTGTCCATTTGTTAATGTGTAAATTTTGATAATTTTTAGACTTTCTAT
TTTAACATTATTTATTTTACAGTGATTTCTATAAGTGGTAAATTATTCTT
TCACATCCATATTTGTAAACGCTATTTTTATCCAAAATCTTTATTTTTAT
CCCATTAATCAATTTTTTATATAGTATAAGAATTGATAATCTTTATATAC
CGATTTTATTGAACATAATATCATAAAAATCATGACTCCAAAACTTATTT
ATACCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070407-exon-scaffold_55-1575043694:369187..369450 | TCONS_00070407-exon-scaffold_55-1575043694:369187..369450 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1575043694:367579..368161 | TCONS_00070407-exon-scaffold_55-1575043694:367579..368161 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1575043694:367240..367369 | TCONS_00070407-exon-scaffold_55-1575043694:367240..367369 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1575043694:366759..367056 | TCONS_00070407-exon-scaffold_55-1575043694:366759..367056 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1575043694:366068..366351 | TCONS_00070407-exon-scaffold_55-1575043694:366068..366351 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1575043694:365243..365705 | TCONS_00070407-exon-scaffold_55-1575043694:365243..365705 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1510915933:369187..369450 | TCONS_00070407-exon-scaffold_55-1510915933:369187..369450 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1510915933:367579..368161 | TCONS_00070407-exon-scaffold_55-1510915933:367579..368161 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1510915933:367240..367369 | TCONS_00070407-exon-scaffold_55-1510915933:367240..367369 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1510915933:366759..367056 | TCONS_00070407-exon-scaffold_55-1510915933:366759..367056 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1510915933:366068..366351 | TCONS_00070407-exon-scaffold_55-1510915933:366068..366351 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1510915933:365243..365705 | TCONS_00070407-exon-scaffold_55-1510915933:365243..365705 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1491911889:369187..369450 | TCONS_00070407-exon-scaffold_55-1491911889:369187..369450 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1491911889:367579..368161 | TCONS_00070407-exon-scaffold_55-1491911889:367579..368161 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1491911889:367240..367369 | TCONS_00070407-exon-scaffold_55-1491911889:367240..367369 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1491911889:366759..367056 | TCONS_00070407-exon-scaffold_55-1491911889:366759..367056 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1491911889:366068..366351 | TCONS_00070407-exon-scaffold_55-1491911889:366068..366351 | Clytia hemisphaerica | exon |
| TCONS_00070407-exon-scaffold_55-1491911889:365243..365705 | TCONS_00070407-exon-scaffold_55-1491911889:365243..365705 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_55 | supercontig | scaffold_55:365243..369450 - |
Blast
BLAST of TCONS_00070407 vs. Swiss-Prot (Human)
Match: MMP14 (Matrix metalloproteinase-14 OS=Homo sapiens GN=MMP14 PE=1 SV=3) HSP 1 Score: 147.517 bits (371), Expect = 1.743e-37 Identity = 96/311 (30.87%), Postives = 163/311 (52.41%), Query Frame = 2
Query: 743 FYSIGLSGDVHFDDDEVYTIGSS--QGKSLLWVAVHEIGHSIGLEHSNLREAVMYPWYRGNGGRDFDLNEDDVIGAQHIYGSRXXXXXXXXXXXXXXXXXX----XXXXXLPPSVCINQFKAAILHKSTGKTYIINNGFVYTLGKQLGIESGPTPVKEIFPGV-SNIDSLYYNTDENIVVHDGKRYYTFNDINGRMIESGTIQN--KYGLSDDVNKIDAAFIWIGNGRVYLFVDKMYYRFDDNRASVDYGYPRVIKDNWKGLSESVDGVSIWRNRV-TYFFKGNSYYRFNDKRIRVEDNYPRPINHIWTQC 1645
F + GD HFD E +T+ + G + VAVHE+GH++GLEHS+ A+M P+Y+ +F L +DD G Q +YG S P + TT P P+ P++C F + + G+ ++ + + + ++ P P+ + + G+ ++I++ Y D V G +++ F++ + +E G ++ + G +KIDAA W+ NG+ Y F YYRF++ +VD YP+ IK W+G+ ES G + + V TYF+KGN Y++FN+++++VE YP+ W C
Sbjct: 204 FPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPFYQWMDTENFVLPDDDRRGIQQLYGGESGFPTKMPPQPRTTSRPSVPDKPKNPTYGPNICDGNFDTVAMLR--GEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPASINTAYERKDGKFVFFKGDKHWVFDEAS---LEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGNKYYRFNEELRAVDSEYPKNIK-VWEGIPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKLKVEPGYPKSALRDWMGC 508 HSP 2 Score: 88.1965 bits (217), Expect = 4.483e-18 Identity = 49/156 (31.41%), Postives = 82/156 (52.56%), Query Frame = 1
Query: 67 SSKXSALTMNEIKLFHTGIPASGILDEATVELMKTPRCGVKDVTG-RLSGVKRKRRYTLQGSKWMKKDLTWKLINDNNDGLTRQQVEDVMTQSFDKWHKITNLNFKKLEHTDATE-----ADIVVKFGVGSHGDPYHFDGRGGTLAHAFYPHNNLG 516
S + + + ++ F+ G+ +G D T++ M+ PRCGV D G + R++RY +QG KW ++T+ I + + + + ++F W T L F+++ + E ADI++ F G HGD FDG GG LAHA++P N+G
Sbjct: 57 SPQSLSAAIAAMQKFY-GLQVTGKADADTMKAMRRPRCGVPDKFGAEIKANVRRKRYAIQGLKWQHNEITF-CIQNYTPKVGEYATYEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAHAYFPGPNIG 210
The following BLAST results are available for this feature:
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