TCONS_00070406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070406
Unique NameTCONS_00070406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1893

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070406 ID=TCONS_00070406|Name=TCONS_00070406|organism=Clytia hemisphaerica|type=transcript|length=1893bp
GTTATGACAGCCAATCAGATCTCATGATCGAAAGGGAGATTCCGAGACGC
TTCATACCATAAATAGAAGCATTCAGGCCTCGGTGAAAACACATCGAATC
TGGCAGGTTCACAGATCTCAAAgcacaaataaaataaaaactttcaaatc
gtCAACATCAAAATGgctggaattttcaaaatcgcTGGAGTTTTACGAGA
AGTTGCAGGCAGTCAAATTCATAACATCAGCAAACGATCCCTCTCGACTA
CTTACAATTTGTGGGCCTACCAACGTAAAATCCTATCCAAGGAGCAAGCT
GATCAATACAAGCGTGATGGATACATTGTGCTCAGAAACCTGTTAACGCC
AGATGAGAAAAAAGATGTCACCAAAATTATGGATGAGATCCAAAACTGGC
CACACTCTGATGACAAATGGTTCACCTATTACGAGCAAGTGGATGGAAAA
CAAGTCATCTCTCGCATGGAGAAATATTACGAATACCATCCCCGTATGAA
AGCTCTTGTCGAAGGGAAATTAGGTCAAGCCATCTCTGATTGTTTGGAAG
AAGACAAATGTGTTGTCTTCAAGGATAAGATCAACTTTAAGATGCCAGGA
GCTATTGGCTACGACGCTCACCAAGATGAACCTTCATACGATATGTTCAA
GCAAGGGCTCCATTTAGCCGCTTTGGTACCTGCCGATCCTATGACACCGG
AAAATGGATGTCTTAAATTGGTGCCTGGTGATTGGAAAGAGGGTGAATGG
CTACCACTCGACTCCAATGGTGACATTGCTGAGGACGTTGCTAGAACCTT
CCAATGGGACCCTGTTGAATGCGACGCCGGAACCGTGGTCTTGTTCAACT
CTTTGGTTCCCCACAAATCAGATGACAATAAAACTGATAAAGCCAGACGT
GCATTTTATCTCACATTCAATGGCATTTCAAGAGGAGATGTGCGTGAAAA
ATTCTACAAATTGAGACGTGAAATGCTTCCATCAGACCATTTGCGTGATC
CAAACAAAGATTACACCGAGGGAATCAAACTCTTCAGTGAAGAAACCATC
GAGATGGGCAAAGGAAACATCTCCAAAGTTGAGCGTGGTAGCTACTAAAT
CAACTTGATGATCATAAAAAAGgacatttttctttgaaattactATACTA
TAACTTTTAGTTATGGagtaattttcttgaaaataactTGCTTAGTAGTG
GAGTGTAGGATGTGATAACCTGGAGGCACATCAACTGTGAAAGGTGTATC
CCTCGCGTCACGCTAGTCGTACGCAATTAGGGTAAAGCGTACACTAATAC
ATTGTGGCTGTCAAActtaaattatttcaaaaaaaaaaactttgtacaAT
ATTTATTAACTATTTTAAGCGCAAATGGCGGCGAGTTTAATAAAAAATGC
AACTTAAGCCTTTATTTCTGTAATTCTTGCGCAGACAGTGGCTAACACTT
Gacatctaatttttttcttaaaatttggataaaattttttgtattatttt
ctaagaaaataaaaaaaacgtaaaaatgaaaatataaaattagcgaaact
aaaaaaaaactcttgaattttctttttcgattttaaTTTTGAACTTTGGC
TGAAGAATCTATTTTAAGGTGGTGTTTTGCTTCAagaaaaatattgttta
aaCTGCTAACTGTTAATCTTTACGAGAGGTTTGTAGTACacactttttta
ataagaatacactttataagaatgtccatgatgaaaatggccaaaaaatt
tagagtatgctaagaatatcaccatcgtggaattttgctactcaagctaa
gaatgctttttttagagcattttctattataaattgtcaattacccccaa
gtaaggctcactccttccgcaaaaatgcctttttttgcttgag
Run BLAST on NCBI

protein sequence of TCONS_00070406-protein

>TCONS_00070406-protein ID=TCONS_00070406-protein|Name=TCONS_00070406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MAGIFKIAGVLREVAGSQIHNISKRSLSTTYNLWAYQRKILSKEQADQYK
RDGYIVLRNLLTPDEKKDVTKIMDEIQNWPHSDDKWFTYYEQVDGKQVIS
RMEKYYEYHPRMKALVEGKLGQAISDCLEEDKCVVFKDKINFKMPGAIGY
DAHQDEPSYDMFKQGLHLAALVPADPMTPENGCLKLVPGDWKEGEWLPLD
SNGDIAEDVARTFQWDPVECDAGTVVLFNSLVPHKSDDNKTDKARRAFYL
TFNGISRGDVREKFYKLRREMLPSDHLRDPNKDYTEGIKLFSEETIEMGK
GNISKVERGSY
Run BLAST on NCBI

transcript from alignment at scaffold_55:349573..351708-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070406 ID=TCONS_00070406|Name=TCONS_00070406|organism=Clytia hemisphaerica|type=transcript|length=2136bp|location=Sequence derived from alignment at scaffold_55:349573..351708- (Clytia hemisphaerica)
GTTATGACAGCCAATCAGATCTCATGATCGAAAGGGAGATTCCGAGACGC
TTCATACCATAAATAGAAGCATTCAGGCCTCGGTGAAAACACATCGAATC
TGGCAGGTTCACAGATCTCAAAGCACAAATAAAATAAAAACTTTCAAATC
GTCAACATCAAAATGGCTGGAATTTTCAAAATCGCTGGAGTTTTACGAGA
AGTTGCAGGCAGTCAAATTCATAACATCAGCAAACGATCCCTCTCGACTA
GTAAGTCTAATTTTCTTCTAAAGCTCTCATTCTGATTACCAATTCTAATA
CATTTCAATTTATAAAATTTGACTAACATCGAATTTCGGTTTTTCTTAAT
ATTTGATCACAAGGGTGTTAATTCCATGATAACCCCCACATAAACAAGGA
TCCATTTTTTCCCGTGTTTGGTCCTCAACTGTCAAGGTAGTTTCTATAGC
TTTTAAAGAGAACTAAACCATTTTATTTTTTTCTGTACCTTAGCTTACAA
TTTGTGGGCCTACCAACGTAAAATCCTATCCAAGGAGCAAGCTGATCAAT
ACAAGCGTGATGGATACATTGTGCTCAGAAACCTGTTAACGCCAGATGAG
AAAAAAGATGTCACCAAAATTATGGATGAGATCCAAAACTGGCCACACTC
TGATGACAAATGGTTCACCTATTACGAGCAAGTGGATGGAAAACAAGTCA
TCTCTCGCATGGAGAAATATTACGAATACCATCCCCGTATGAAAGCTCTT
GTCGAAGGGAAATTAGGTCAAGCCATCTCTGATTGTTTGGAAGAAGACAA
ATGTGTTGTCTTCAAGGATAAGATCAACTTTAAGATGCCAGGAGCTATTG
GCTACGACGCTCACCAAGATGAACCTTCATACGATATGTTCAAGCAAGGG
CTCCATTTAGCCGCTTTGGTACCTGCCGATCCTATGACACCGGAAAATGG
ATGTCTTAAATTGGTGCCTGGTGATTGGAAAGAGGGTGAATGGCTACCAC
TCGACTCCAATGGTGACATTGCTGAGGACGTTGCTAGAACCTTCCAATGG
GACCCTGTTGAATGCGACGCCGGAACCGTGGTCTTGTTCAACTCTTTGGT
TCCCCACAAATCAGATGACAATAAAACTGATAAAGCCAGACGTGCATTTT
ATCTCACATTCAATGGCATTTCAAGAGGAGATGTGCGTGAAAAATTCTAC
AAATTGAGACGTGAAATGCTTCCATCAGACCATTTGCGTGATCCAAACAA
AGATTACACCGAGGGAATCAAACTCTTCAGTGAAGAAACCATCGAGATGG
GCAAAGGAAACATCTCCAAAGTTGAGCGTGGTAGCTACTAAATCAACTTG
ATGATCATAAAAAAGGACATTTTTCTTTGAAATTACTATACTATAACTTT
TAGTTATGGAGTAATTTTCTTGAAAATAACTTGCTTAGTAGTGGAGTGTA
GGATGTGATAACCTGGAGGCACATCAACTGTGAAAGGTGTATCCCTCGCG
TCACGCTAGTCGTACGCAATTAGGGTAAAGCGTACACTAATACATTGTGG
CTGTCAAACTTAAATTATTTCAAAAAAAAAAACTTTGTACAATATTTATT
AACTATTTTAAGCGCAAATGGCGGCGAGTTTAATAAAAAATGCAACTTAA
GCCTTTATTTCTGTAATTCTTGCGCAGACAGTGGCTAACACTTGACATCT
AATTTTTTTCTTAAAATTTGGATAAAATTTTTTGTATTATTTTCTAAGAA
AATAAAAAAAACGTAAAAATGAAAATATAAAATTAGCGAAACTAAAAAAA
AACTCTTGAATTTTCTTTTTCGATTTTAATTTTGAACTTTGGCTGAAGAA
TCTATTTTAAGGTGGTGTTTTGCTTCAAGAAAAATATTGTTTAAACTGCT
AACTGTTAATCTTTACGAGAGGTTTGTAGTACACACTTTTTTAATAAGAA
TACACTTTATAAGAATGTCCATGATGAAAATGGCCAAAAAATTTAGAGTA
TGCTAAGAATATCACCATCGTGGAATTTTGCTACTCAAGCTAAGAATGCT
TTTTTTAGAGCATTTTCTATTATAAATTGTCAATTACCCCCAAGTAAGGC
TCACTCCTTCCGCAAAAATGCCTTTTTTTGCTTGAG

Coding sequence (CDS) from alignment at scaffold_55:349573..351708-

>TCONS_00070406 ID=TCONS_00070406|Name=TCONS_00070406|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at scaffold_55:349573..351708- (Clytia hemisphaerica)
CTTACAATTTGTGGGCCTACCAACGTAAAATCCTATCCAAGGAGCAAGCT
GATCAATACAAGCGTGATGGATACATTGTGCTCAGAAACCTGTTAACGCC
AGATGAGAAAAAAGATGTCACCAAAATTATGGATGAGATCCAAAACTGGC
CACACTCTGATGACAAATGGTTCACCTATTACGAGCAAGTGGATGGAAAA
CAAGTCATCTCTCGCATGGAGAAATATTACGAATACCATCCCCGTATGAA
AGCTCTTGTCGAAGGGAAATTAGGTCAAGCCATCTCTGATTGTTTGGAAG
AAGACAAATGTGTTGTCTTCAAGGATAAGATCAACTTTAAGATGCCAGGA
GCTATTGGCTACGACGCTCACCAAGATGAACCTTCATACGATATGTTCAA
GCAAGGGCTCCATTTAGCCGCTTTGGTACCTGCCGATCCTATGACACCGG
AAAATGGATGTCTTAAATTGGTGCCTGGTGATTGGAAAGAGGGTGAATGG
CTACCACTCGACTCCAATGGTGACATTGCTGAGGACGTTGCTAGAACCTT
CCAATGGGACCCTGTTGAATGCGACGCCGGAACCGTGGTCTTGTTCAACT
CTTTGGTTCCCCACAAATCAGATGACAATAAAACTGATAAAGCCAGACGT
GCATTTTATCTCACATTCAATGGCATTTCAAGAGGAGATGTGCGTGAAAA
ATTCTACAAATTGAGACGTGAAATGCTTCCATCAGACCATTTGCGTGATC
CAAACAAAGATTACACCGAGGGAATCAAACTCTTCAGTGAAGAAACCATC
GAGATGGGCAAAGGAAACATCTCCAAAGTTGAGCGTGGTAGCTACTAAAT
GGCTGGAATTTTCAAAATCGCTGGAGTTTTACGAGAAGTTGCAGGCAGTC
AAATTCATAACATCAGCAAACGATCCCTCTCGACTACTTACAATTTGTGG
GCCTACCAACGTAAAATCCTATCCAAGGAGCAAGCTGATCAATACAAGCG
TGATGGATACATTGTGCTCAGAAACCTGTTAACGCCAGATGAGAAAAAAG
ATGTCACCAAAATTATGGATGAGATCCAAAACTGGCCACACTCTGATGAC
AAATGGTTCACCTATTACGAGCAAGTGGATGGAAAACAAGTCATCTCTCG
CATGGAGAAATATTACGAATACCATCCCCGTATGAAAGCTCTTGTCGAAG
GGAAATTAGGTCAAGCCATCTCTGATTGTTTGGAAGAAGACAAATGTGTT
GTCTTCAAGGATAAGATCAACTTTAAGATGCCAGGAGCTATTGGCTACGA
CGCTCACCAAGATGAACCTTCATACGATATGTTCAAGCAAGGGCTCCATT
TAGCCGCTTTGGTACCTGCCGATCCTATGACACCGGAAAATGGATGTCTT
AAATTGGTGCCTGGTGATTGGAAAGAGGGTGAATGGCTACCACTCGACTC
CAATGGTGACATTGCTGAGGACGTTGCTAGAACCTTCCAATGGGACCCTG
TTGAATGCGACGCCGGAACCGTGGTCTTGTTCAACTCTTTGGTTCCCCAC
AAATCAGATGACAATAAAACTGATAAAGCCAGACGTGCATTTTATCTCAC
ATTCAATGGCATTTCAAGAGGAGATGTGCGTGAAAAATTCTACAAATTGA
GACGTGAAATGCTTCCATCAGACCATTTGCGTGATCCAAACAAAGATTAC
ACCGAGGGAATCAAACTCTTCAGTGAAGAAACCATCGAGATGGGCAAAGG
AAACATCTCCAAAGTTGAGCGTGGTAGCTACTAAATGGCTGGAATTTTCA
AAATCGCTGGAGTTTTACGAGAAGTTGCAGGCAGTCAAATTCATAACATC
AGCAAACGATCCCTCTCGACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043846XLOC_043846Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070406-proteinTCONS_00070406-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070406-exon-scaffold_55-1575043694:351459..351708TCONS_00070406-exon-scaffold_55-1575043694:351459..351708Clytia hemisphaericaexon
TCONS_00070406-exon-scaffold_55-1575043694:349573..351215TCONS_00070406-exon-scaffold_55-1575043694:349573..351215Clytia hemisphaericaexon
TCONS_00070406-exon-scaffold_55-1510915933:351459..351708TCONS_00070406-exon-scaffold_55-1510915933:351459..351708Clytia hemisphaericaexon
TCONS_00070406-exon-scaffold_55-1510915933:349573..351215TCONS_00070406-exon-scaffold_55-1510915933:349573..351215Clytia hemisphaericaexon
TCONS_00070406-exon-scaffold_55-1491911889:351459..351708TCONS_00070406-exon-scaffold_55-1491911889:351459..351708Clytia hemisphaericaexon
TCONS_00070406-exon-scaffold_55-1491911889:349573..351215TCONS_00070406-exon-scaffold_55-1491911889:349573..351215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:349573..351708 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43624	0.782861	2.53017	1.85472	122.341	101.617	147.384	152.663	6.5	41.5687	4.91191	26.1913	29.3814	2.11551	200.252	156.072	169.884	162.994	85.6669	331.647	216.51	294.168	166.381	158.122	1.94549	1.74186	62.6345	45.4008	688.533	433.9
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008775Phytyl_CoA_dOase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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