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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070405 ID=TCONS_00070405|Name=TCONS_00070405|organism=Clytia hemisphaerica|type=transcript|length=1688bp
AAAAATTGTTTCGATTCTTGTAGAAAGAGTTTAAAATCATTAACGGTAAA
TCTCTTTTTTAAGACCTAATAGATTTGACACATGCACTAAAGATagttaa
ggctttttcaaaatttatcaagagGAATGAAGACAAATTGATCTTTATTA
TGATAGCACtattaaaaaacaatcaaataaaaaataataaatgcTATTTC
AATTAACCATGAGATAAAAACTAGCAGCAGCCCAGACATAAACCTCTCTT
TCATAAAAGGgtaaaataattattgataCATCactttatctgattttgat
aaAGTTTCATAAAAAAGCCTATTGAATGTCTTATAGCCAGTTAGACTATC
ATAAATGTTCCCATCCCAATGATACTTCATGCAATGTCCTCCAGAATAGT
GGTTTATATTGATGTATATTTATATCCCATTCCTTGATAAAATCAAATAT
ATGCCATCAACCATCTTACATGTAGATGAAATTATATTTACTCAAAAGGC
AAGGTAATGTAGCAATTACTGGTCCATACCCTTGTGGattatcaaaaagt
tcaaaaagtgGTGCAGCCACTAATTTATAATTACGTGGTACAGCAAAAAT
AGCTTTCTCTGGTAATTGGGTTAAAAAGATTCTCTTTTGTTCTTTAGGTT
TCGTGATATGAGCTGGTATATAGGGATAAATTGGTGTTTCGAAATTTGGT
CGCCACCAATTTGAAATGGTATCTTCAACTTGCCATTCAATCTGATCAGT
CATGTCTGTTTTACCCAACATCTCAGACATTGAACGCTTCAAACCTTCGG
CTTCATCCTCTCCAGGCATTAGCTCACCACCaggcaatttaaaaaaagtg
gtGCCTAGCTGAAGTAATAGAATATGTGGAAGACCATGCTCGTGAACAAT
CAAACAGCCTTCCACGTTTCTTCTCATACCAAGAGAATCATACTCATTTC
TCATTCGTTGGAAGCGTGCTTGTACAGAAGAATCTTTCTCATAAAGAGCT
TCTTTTGTACCAAAAGTATAATTACTTAACGGATAAATGTACAATGCACG
CTCCATATTTGGAGACTGTTGTTGGTCACCAGCAGTGTAATTTTGTTGTA
TTTCTGTCATATTTTTTGGCCAACCAGCACCAGTATTGTTCATATCTTTC
TAAATaaattgaattgtatttttacAAATTGTAACATTATTTCCAAACCA
AGAACTCTTACCTTTTCATTAACTTTGCTCCTCTGAAACGTTCTTTCTAG
TTTTCCTTCTTTACTTTTTCTCTTCTCCTTttgtttaaaatcaaaaagct
aaaaaattttgggatttgaaaaaatatcttgCAAAAAAGTTATATTTCTT
GCGCTACTGCAGTATTATTCCCTCTCCCCTCTTCCCAACTCTCTTTATAA
TTTAGCTACTGACTTTGCTTGCTTGTCTTGTCTCCGGTCACCTAGTACAT
ATAATCCAAAATGATGGATGAAAATCTAAAAGATctatatcgataaagtg
aaagtCCTGATTCGATGGGAAAAAGACATCAGCTATCTATCTAATTTTAC
GCAAATAAAAACACACAAGGTAttagtcactttcattttctacaTGGTCT
TTTACAAAACAGCTCTGGCTGACAACAGTAATGTATGCTGTATTTATTTT
TGAAGCTCTGTTAATAGTTCTTTATATTGGAGGTTTAG Run BLAST on NCBI transcript from alignment at scaffold_55:269325..271071- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070405 ID=TCONS_00070405|Name=TCONS_00070405|organism=Clytia hemisphaerica|type=transcript|length=1747bp|location=Sequence derived from alignment at scaffold_55:269325..271071- (Clytia hemisphaerica)
AAAAATTGTTTCGATTCTTGTAGAAAGAGTTTAAAATCATTAACGGTAAA
TCTCTTTTTTAAGACCTAATAGATTTGACACATGCACTAAAGATAGTTAA
GGCTTTTTCAAAATTTATCAAGAGGAATGAAGACAAATTGATCTTTATTA
TGATAGCACTATTAAAAAACAATCAAATAAAAAATAATAAATGCTATTTC
AATTAACCATGAGATAAAAACTAGCAGCAGCCCAGACATAAACCTCTCTT
TCATAAAAGGGTAAAATAATTATTGATACATCACTTTATCTGATTTTGAT
AAAGTTTCATAAAAAAGCCTATTGAATGTCTTATAGCCAGTTAGACTATC
ATAAATGTTCCCATCCCAATGATACTTCATGCAATGTCCTCCAGAATAGT
GGTTTATATTGATGTATATTTATATCCCATTCCTTGATAAAATCAAATAT
ATGCCATCAACCATCTTACATGTAGATGAAATTATATTTACTCAAAAGGC
AAGGTAATGTAGCAATTACTGGTCCATACCCTTGTGGATTATCAAAAAGT
TCAAAAAGTGGTGCAGCCACTAATTTATAATTACGTGGTACAGCAAAAAT
AGCTTTCTCTGGTAATTGGGTTAAAAAGATTCTCTTTTGTTCTTTAGGTT
TGGTGATATGAGCTGGTATATAGGNTGGGTTAAAAAGATTCTCTTTTGTT
CTTTAGGTTTCGTGATATGAGCTGGTATATAGGGATAAATTGGTGTTTCG
AAATTTGGTCGCCACCAATTTGAAATGGTATCTTCAACTTGCCATTCAAT
CTGATCAGTCATGTCTGTTTTACCCAACATCTCAGACATTGAACGCTTCA
AACCTTCGGCTTCATCCTCTCCAGGCATTAGCTCACCACCAGGCAATTTA
AAAAAAGTGGTGCCTAGCTGAAGTAATAGAATATGTGGAAGACCATGCTC
GTGAACAATCAAACAGCCTTCCACGTTTCTTCTCATACCAAGAGAATCAT
ACTCATTTCTCATTCGTTGGAAGCGTGCTTGTACAGAAGAATCTTTCTCA
TAAAGAGCTTCTTTTGTACCAAAAGTATAATTACTTAACGGATAAATGTA
CAATGCACGCTCCATATTTGGAGACTGTTGTTGGTCACCAGCAGTGTAAT
TTTGTTGTATTTCTGTCATATTTTTTGGCCAACCAGCACCAGTATTGTTC
ATATCTTTCTAAATAAATTGAATTGTATTTTTACAAATTGTAACATTATT
TCCAAACCAAGAACTCTTACCTTTTCATTAACTTTGCTCCTCTGAAACGT
TCTTTCTAGTTTTCCTTCTTTACTTTTTCTCTTCTCCTTTTGTTTAAAAT
CAAAAAGCTAAAAAATTTTGGGATTTGAAAAAATATCTTGCAAAAAAGTT
ATATTTCTTGCGCTACTGCAGTATTATTCCCTCTCCCCTCTTCCCAACTC
TCTTTATAATTTAGCTACTGACTTTGCTTGCTTGTCTTGTCTCCGGTCAC
CTAGTACATATAATCCAAAATGATGGATGAAAATCTAAAAGATCTATATC
GATAAAGTGAAAGTCCTGATTCGATGGGAAAAAGACATCAGCTATCTATC
TAATTTTACGCAAATAAAAACACACAAGGTATTAGTCACTTTCATTTTCT
ACATGGTCTTTTACAAAACAGCTCTGGCTGACAACAGTAATGTATGCTGT
ATTTATTTTTGAAGCTCTGTTAATAGTTCTTTATATTGGAGGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070405-exon-scaffold_55-1575043694:270425..271071 | TCONS_00070405-exon-scaffold_55-1575043694:270425..271071 | Clytia hemisphaerica | exon |
| TCONS_00070405-exon-scaffold_55-1575043694:269325..270365 | TCONS_00070405-exon-scaffold_55-1575043694:269325..270365 | Clytia hemisphaerica | exon |
| TCONS_00070405-exon-scaffold_55-1510915933:270425..271071 | TCONS_00070405-exon-scaffold_55-1510915933:270425..271071 | Clytia hemisphaerica | exon |
| TCONS_00070405-exon-scaffold_55-1510915933:269325..270365 | TCONS_00070405-exon-scaffold_55-1510915933:269325..270365 | Clytia hemisphaerica | exon |
| TCONS_00070405-exon-scaffold_55-1491911889:270425..271071 | TCONS_00070405-exon-scaffold_55-1491911889:270425..271071 | Clytia hemisphaerica | exon |
| TCONS_00070405-exon-scaffold_55-1491911889:269325..270365 | TCONS_00070405-exon-scaffold_55-1491911889:269325..270365 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_55 | supercontig | scaffold_55:269325..271071 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016706 | Cleav_polyA_spec_factor_su5 |
| IPR000086 | NUDIX_hydrolase_dom |
| IPR015797 | NUDIX_hydrolase_dom-like |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005849 | mRNA cleavage factor complex |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003729 | mRNA binding |
| GO:0016787 | hydrolase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006378 | mRNA polyadenylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006378 |
mRNA polyadenylation |
| cellular_component |
GO:0005849 |
mRNA cleavage factor complex |
| molecular_function |
GO:0016787 |
hydrolase activity |
| molecular_function |
GO:0003729 |
mRNA binding |
Blast
BLAST of TCONS_00070405 vs. Swiss-Prot (Human)
Match: CPSF5 (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUDT21 PE=1 SV=1) HSP 1 Score: 319.701 bits (818), Expect = 2.626e-105 Identity = 153/224 (68.30%), Postives = 180/224 (80.36%), Query Frame = -3
Query: 472 NNTGAGWPKNMTEIQQNYTAGDQQQSP-NMERALYIYPLSNYTFGTKEALYEKDSSVQARFQRMRNEYDSLGMRRNVEGCLIVHEHGLPHILLLQLGTTFFKLPGGELMPGEDEAEGLKRSMSEMLGKTDMTDQIEWQVEDTISNWWRPNFETPIYPYIPAHITKPKEQKRIFLTQLPEKAIFAVPRNYKLVAAPLFELFDNPQGYGPVIATLPCLLSKYNFIY 1140
N + GWP+ +T+ Y QQ P +ER + +YPL+NYTFGTKE LYEKDSSV ARFQRMR E+D +GMRR VEG LIVHEH LPH+LLLQLGTTFFKLPGGEL PGEDE EGLKR M+E+LG+ D Q +W ++D I NWWRPNFE P YPYIPAHITKPKE K++FL QL EKA+FAVP+NYKLVAAPLFEL+DN GYGP+I++LP LLS++NFIY
Sbjct: 7 NRSQTGWPRGVTQFGNKYI---QQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIY 226
The following BLAST results are available for this feature:
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