TCONS_00070371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070371
Unique NameTCONS_00070371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length885

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070371 ID=TCONS_00070371|Name=TCONS_00070371|organism=Clytia hemisphaerica|type=transcript|length=885bp
AAAAACAGAAAGTCCTGAAAATGGGACTGCTGCTGATGACACGTTAGCAG
AAAAGTTGCAGGCTCAAATCTTGAAGAACTTACAGGTTCGAATAAAGAAT
ATCCATGTTCGATATGAAGATAAGACGACGATACCTGGCCAACCATTTTC
AGTTGGTGCAATGTTGTACAGTGTCACTTCAGAGactACCACAGCCAATT
GGATACCAACAATTATCGATGGTTCTGTCAGAAAGTTTTATAAAATGGTA
AACCTGGATTCCCTATCACTGTACTGGAATTCCAACACTCAATTTTCGAT
GACTTCGAATGAAAACTGGAAGGCGCTGATGAAAAGTCAAGTGACAAATC
AATCTTCAAAAACTCACATTGATTACATCCTTGAACCGTTGTCATTGGCA
GTACACATGGAAGTTGACCAAGATGCTCGAGTATCCATGGAATACCCAAA
ATTTCTGATGCAAGTTATTTTGAAGGAATTGACTTTGAGCCTTTCTAAAG
AGCAGTTCAATGGCATCATGAAGCTACTGGATTCATTTATGTTGATGGAA
GTCAATCAAATTTATCGAAAGTACAAACCATTAAAAACTGTCAAGGAAGA
CCCCAAAGCTTGGTGGCAGTATATTTTGAAGAGTTACACAGAGACTTCTT
ATAAACAATGGACTTGGGAATACATGAAGTCACACAGAGAGCTTTACAAA
AAGTATGTTAAGCTTTACTACCAGAAATTGTGCTTGGGATTCCAAAAAAA
CCCAGACCCAAATCATCTTGCTGTTATCAAGAAACTTATCAAGGAGCAAG
AGGAGAATTTAGATGTGATCAATATTCTTATTGCAAGAAATCAAGCCACG
AATGAGTAGTGGTCATTGTGTCAACTGTGTACGGG
Run BLAST on NCBI

transcript from alignment at scaffold_55:274349..286465+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070371 ID=TCONS_00070371|Name=TCONS_00070371|organism=Clytia hemisphaerica|type=transcript|length=12117bp|location=Sequence derived from alignment at scaffold_55:274349..286465+ (Clytia hemisphaerica)
AAAAACAGAAAGTCCTGAAAGTGAgttataatgtttttttttgtgtcgGT
TTCAGTCTTTATGTATTCTTTTCTTCATTAATATCCCATCCCCTTTGGTT
ATGGCAGGTTGTGtttaaaatcaccaaaattgttcaaaaattaAACTGGA
AGAAATGAACAAAACCCTGAAATTCTAAAACCCTACAATTGGTTCTTATA
ACAAGAAAGTTTTGTTGACCTTTGCCTTTGACGATTCGAACATTTGCTTT
TGAAGATATtgcaaagtgtttttttttctggttttatcaTCAGGACATAT
AATTTGCTtccataaaatatcaaaacaaacaacaagTTTGCGATCGTTAT
AATCAATACACGAGCAACAATTTTGATgcttttgtctttttgaagaaatt
gaaatGGAGAGTATGTCATGTATGTCACAATACTAGTATGTAAACGACGA
ATAAATGATTGGTATTGCATTGGCCATTTAAACGAATGAAGGAGTCCTGG
ATTAGTGTCTTGATAGTTTCGATTCGACCCTTTGTCTTGATAATTCGAAC
ATCTCTTTTTGTAGATATTCACGAGTGTTTCTATGAGGTTTCCTAAATAT
AATGTAAAGTTTATtaccataaaatatcaaaacaaatagCAAGTTAGCAA
TCGTAATAATCAATACACGAGCAACAATTTTAATGTTTTcgtctttttga
agaaaatgaagtgGAAAATAGGTCATGTATGTCACAATACTTGTAAATGA
CGAATAAACGATTGGCATTGCTTCATTGAAAGGTCCAGGAAGATTACGAC
CACGATAAGCTTGAATGGATGATATGAGGTGCAGGATAATGTTCAAAACT
ATTTGCACAGTCATATGCGATGTTGTGTTGCAGTGGTAGATCTTGGTATA
TGTGGAGTGGTTTATTTTAACATCCAATTTTGTTGGCGTTCGATTTAAAC
TTAAAAACAATGCCAATAAATCAAGCAATATCAAAATCATCACAATGAAG
ATTTGGGACATGAAAGTCTGTCGTTTCTGTTTTTCTGTCAATCTTAGCTT
CGaattaaaagcagtcaatagaTTTTGACATTTGATGAAAATCAATGTCT
GAGGAGAAAATGCCAGTATTGAGGTGACTATCAGGTCCATCAAGCAAGTC
ATTTTTGTTGATTCGTTAGAAATCGAAAATGGTACAGGGATAGTGGAAAA
CAAAAGTAACATTAACACAAAATGTAACATTATAATTGGAAAATTGGATC
CACGGACTATAACCGTGTCCCTTTTTCTAATGAATATGACGATAGTTGTG
ATGATAAATACAACACCAAGTGTACACAATACAGTAGAAATCATCAACCC
TTTCTGGTTTTTGAGCTTCAAATGTATTGTCGAGTATGGATCATAACAAG
AGTCTCGTTTCGGGGAAGATAATTTATATTTTGGACAAGGAGAGCAAGTA
CTGTATAATTGTTTATCGTTGGGTTGGAAATGATCGCCAGAACATTGTTG
GCAACTCCAGCCATACGATGAGCTACTCCATATTCCACGGCTTTGTGCAG
GTAGTatgtcaaaaacattttcactaCCTATTCTGCATTCTGGAACAGGA
CATTCTTGTGTATGGTATCTAACAACACTATACCCAATAACTGGAACAAA
TGCTCTCTTGCTTGTCTCTCGGACTTCGATTTTGCCATGAACATAATACA
TAAATCTCAACTGACTTTTATTCGAATTACTTCTCTTTATCAACGCACCT
TTAAACCTGTCAAAAGTCATGTATCTAAATATGTTCATTGTTCTATAGAT
TTGTATCAGTTGAGCCATTTTTAAAAGATGTGTGTCCATTGATTGGATAC
AATTAAAGACTGTCAACTTTTCCTGTACCCTCGATGTTATCgataatttc
ttttcaatatgaGTTAAACCAGCCTcataaaaaatcactttttcagAACT
CATTGTGCTGAATGTAAAGAGATCAATGGTGTGCCAGTGTTCAGTGGAGG
TTGAATCTTGATGCATATCTAACAAGAAGACATTTAATTTGAGATCCAAA
AACATGAAGTGAATACTATATCTAGTCATGAAtatatttgattggtttat
ATCGCCCAGAACCATAATGATCTGCCATTGGTTGATCTGTTCTATTACTT
TGAAAAGTGCTTTCGTATCGTTTTGACTATTCGACAATGTTATGGTGTAA
AACTTAGGACAAAGTCCCAACTCTGGAGTATATTCTTGAATCACTTTGTA
AAAATGTTCATAGTCCAATTTGGTGAAAGTTAAATTGCTCTCAAGGTAAA
CAATAATGAAATTTTTgtgttgatttatattcatgtTCCAATAGCCTGCA
AAACTTTGCAGATTAAGGTTTCTGTTAGCCTGATTGTTGAAATAATATAG
GAAGTTTCTTGCATTCACATCAAACATATTAGCGTCACTGTGCAGGTTTT
TTCGTTGTAACGACACCGGAATTATATCTTCTATATTAACAAATCTGACT
ACAAAGTCTTCAccgaaaaatatttcttgtaacAGTTTGGAGATTGTTTT
TGGTGCATGTATAATAACAAGAATAATTCTTGAAGTATATTGCCAAGACT
TAATGTTCCTTTTGTTCCATTTGGGAATTTGATGTTGTTCGTTCTTGGTG
ACCATATAGCTTTCGTTAACTTTCAAGTTCAACGCTATTTCCAATGCTTG
TGTTGTGCTACAAAAGTTGATCACTTGATATTCAATATCATTATCATTCA
TTGTTAATAAGTTGCCAACCTTATTAAAATCCTTATTTCTTAAGAATTGG
AACCACTTTGACTTCTTATGTTGGTACGCGTAATCAATAgcatttttaca
aatatttgaTTGAGTGACATTTTCATCTCCTGAACACTGATGGTAAAGTC
CCACAATGAGCATAGGATTACCACCTGGTCTTAGAGTTGTAGATAATGAT
ACTTTAGAAAACAAGATCTTCAAAATATTGAGAATGAGAAGTTGTTTCAT
CATTCAATCGCTTTGTCTCTTATACTACCACGTCTAGCGATATGTACCTT
TGagatttttatatttcataGCTACCAAGAAATTTTGGTGTTCTCAAAGT
ATTTTCTTCTTACTCTTTGGCTGAGCTTAAAAGTCATCCATGCAGGTGTA
TTTTTAAGAGagaagagagagagaaaaagagaaaggTTCAAACCCTCATT
AtaatattcaagaaaaacctttaaaatgaaAGTTTTAATATCTTGAGACT
ATTAGTTTTGACTCATGATAattaaaaatgtcaatatgtgtctattaaaa
aaactctttaactcgaacctctacaactcgaatgcttccttaactcgaat
aagtTAAACCTTACTCAATACATAACTGAAAATATCCTCatcttgaacaa
atttgtgttctctTTATTAAGGCTCAAACGTAAAAGAAGTTCTGATTTAA
TTTAATATATCCTTTCCATTTCATTTTAGATGGGACTGCTGCTGATGACA
CGTTAGCAGAAAAGTTGCAGGCTCAAATCTTGAAGAACTTACAGGTACCA
TAGTCATAATATTTAAGTATTTAGTTTCAATTGAAGGCCTCCTTTTATAG
CTTCTATGGAATTCGCTTctatatttaatttttcaatgtcCCCTCCcgct
ttttaataagaatatactCCCAAAATGGAATAACTATTTTTTTTTGGTCG
AGACTGATAACATATAGGGAAGAAACAACCAGATGAACCATTTTAAGAAT
GATTGTATTGTAATTTTTCTTAGGTTCGAATAAAGAATATCCATGTTCGA
TATGAAGATAAGGTACATGCTTGATAATTACTGTTAAGGTTATAATTTAT
ACTGATCTATATTATATTTCTGCCACTCTGCTCACTGGCATTTCTTTAAT
TCGTGCACTTTTCAGATACAATTTtgacaatttcaaaatttaattttcct
cAACAACATTAATggaattgaatttttatttagACGACGATACCTGGCCA
ACCATTTTCAGTTGGTGCAATGTTGTACAGTGTCACTTCAGAGGTATTTT
ATTCTTGAAACtggcaaaattaaaaagctgaCTGGgaaaaaccattgagt
ttaaagcccgaagggtactaatgtaacattccaaaggtagttgaaactgt
aaaggtgaaaaaaaaagaatatttacctttcaatgggtACCTTTCataat
cagtccaaaagttgatgcatgcacctcaaaaaccaaagagattcgttggt
tttcagggccatctttgttgttttgaaaatgaaacgcagaaaaaaagact
gggcccagacatctggaagaagcgggaaaaaagcaaaggagataaagttt
tggtactattactattatttgtacaaaagttgcaattttcataaaactaT
TCTACATTATAATACTCAACACATAGATTatattctattaaaataagaaa
tttatgaaacaaatacttcaaatagtgctaaactaattttaaccccatcc
aacacgaagcaaagtcgatatttcgccatcccaccggctcattttcagaa
attttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatatacag
atttttttacgccacgcgcagatctagagaaaggatgctacactccctat
tcgggcgcttcgcgccctcaaaacggtcgttccgcaaaaagCTGACTGGg
aaaaaccattgagtttaaagcccgaagggctagagttcaatctctaacct
ttcttttctcaggcaagaaaaagtgaagtgatatttttttcagatttagc
ggtaaattttagtttcaatctgtcatttgtgtaaaaaccaggcgagccgc
tcaaggccgcgcaactttggtaggatttgttggcttcaaatcctaccaag
gagattgacttctagcccttcgggcttatacttcattggggaAAACTTGA
ACTCAAATTAAAGATAAAGTGATTACGAATCAAAGtttcgatttttttgt
tttagactACCACAGCCAATTGGATACCAACAATTATCGATGGTTCTGTC
AGAAAGTTTTATAAAGTACCatcttattagttttttttatactTTCATTC
TGAGTACACCTGCTGCTTGTGTAAGCCTATACTTGTGATAAAATACATAG
TGCTGCTcgaaaatattatataaaggAGGGCCTGCTCACATTTCAAGTTG
Taagcacagatatctgtaaagcccgaagggctagataggcaactttaact
TTCTCCAGAAAAAAAAGTGACGCAAAACATTGTAAATGAAACAAGTAAAA
CAAGTTGTAAGTAGCCCCACCTCAATGCAACACATTCTTACATTTTTTAG
CAGCAGCTTTTGCTGACAATTAAAAAAAGCAATAatttttattcatgata
tgcaccactgagAGTCttttgagaacttttaaaattttccactcaatacg
tcactttaaacaatagaaaaagtgacgtattgggtgaaaatttttgaaaa
ctcttggagactctccagtgttgcatatcatgaataatgtGTTTAATGTG
ATTTTGAGAGAAGAGTAAAGTTGAAGATCAAACATCCTTTTCAGATGGTA
AACCTGGATTCCCTATCACTGTACTGGAATTCCAACACTCAATTTTCGAT
GACTTCGAATGAAAACTGGAAGGTATTATAATTAAATTATCCGTCTGAGT
GACCGTGTAGTGCGATGGTAGAACTTTCGGCTACGATGCGCAAGGTTTTG
GGTTCACTAAAGACTTTATACTAAGTACAACAAATTGCACTTGATGCTTC
TCTGCTTGTAGATAGCTATTGAAAGAGGGACCTTTGGATATGCCGACTGC
AGATGCGTTGCAAACTTACTTAAAACTATCCATCTGATATGGATGAAAAT
CATGATTGTTTTTACCATTCATCAAATTACGATTATTCATCATTTACAAT
ACTACAACTAAAAGTTTTAATATGCTTCCATCGCATGTTGTTTCACTTTA
GGCGCTGATGAAAAGTCAAGTGACAAATCAATCTTCAAAAACTCACATTG
ATTACAGTAAGGATCTATCTGATATACTTAAGACAAATAGTAATACTTAA
TAAACAAGAAGCATGTCTGTTACTGTGCTATCGTGTATCGATTTCACAAT
ACACCGTGGATGAGAGAAGAGTGCACTGATCTTGTTCCCCAGTGGTTCGC
GCTCGATTAATGCACTTGATATGAAAAGCTGCGTATCAGTGTCTGGCAAG
CTGGTTGGCAGTATAAAATACAACGTAAGGTGGTTCTAACGAGATGACTC
CCTAGACCGCTCAATATAGCGGGCATCTTCTGTAAGGGGAAGCCATACAT
CAATAGTAAACGTCGTGTTCAACTCAACGACTGAAATGTTGAGATAAAGG
AGGGTTATACTTATCAGATTTTCTAAACTTAGAAAGGATGACTTTCATTT
CTCTAATAATACTTACGATATCGTATTTTGACGAACACAATATTGAAGTT
TGATATCTCGAGTCTTTATACAATCTCTATTCGGCAATTTTGGACTCGTT
TTgtgttttttattcatttttcctAAATGTTTCATAGTCCTTGAACCGTT
GTCATTGGCAGTACACATGGAAGTTGACCAAGATGCTCGAGTATCCATGG
AATACCCAAAAGTATGTTTATCACATCAATAACTTTATAGTTATGGACTT
AATTTTTTAATCTGTGATTTTTATATAACTCGTACTTGCATTAATGGATT
GTCTTTTATTAGGCTTAAATGATGATGGTTagttcttaaaatgtttcaaa
attcaataaatgtaaCATCTTCTTTCTCTTTTAGTTTCTGATGCAAGTTA
TTTTGAAGGAATTGACTTTGAGCCTTTCTAAAGAGCAGGTATAAAGTCTA
TGTTTTTGAACATCTTTAGCTTTTcgattactcttaggttccaaataaac
gcccctccccccgcttgttaatttttcgaaaattttccaaccccctggac
cttattattttcagctgtcccttatttttctttaaatagcctgatattta
ccttattttttggttttcagaagtacaattttcccggcaattaggccccc
cgtttattcgaacccccccccccgtttatttggaacctaagagtaaagaA
CAGACTTAGGAATCTTTGCTATTACATAAACTCTGAGGGTTGCTGATAGA
TTTTGGCCTTGAATGGAACTTTGTGCTTGTCATAAAAACAAAGTTCTTGT
GTCAACTGAAAAGTTGTTTAAATTCGACTTACGATTTTAAATCCTTTGAT
TTTTCACACGTATAATTTAGCATTTAACTGTATTATTTAATAGTTCAATG
GCATCATGAAGCTACTGGATTCATTTATGTTGATGGAAGTCAATCAAATT
TATCGAAAGTACAAACCATTAAAAACTGTCAAGGAAGACCCCAAAGCTTG
GTAAATAAATGATGTGCTTTTCAGCCATTAGAAATAattcttaaaagttt
cgaaaaaaaagattCAGATTCATGTATAATATGATGCAGTTGGCTTCCTC
CAATTcgatctttcaaatttttctttaattataGAAGGATTGGAATTACA
GGGAGTAATTTATACGACTTTTGAGCTGGATTGGCCAATActtaagttcg
aattacagaaaattcGAATAGAGGCTCGAATTATAAAGAGTTGGCTGTAT
ATTTTTTGTCAGTTGTCTTTGCTGACAAGGAAtgcattattttttttgtt
tttgaatcgaAGACGTCATGACAACGTCAATCTCTTTACAAATAAAGGTC
TACCTGAGAATTAGTTTTTCTGAAACATAAAGCTATACTCTACTTTTATC
ATCTGTTTGCATTTTAGGTGGCAGTATATTTTGAAGAGTTACACAGAGAC
TTCTTATAAACAATGGACTTGGGAATACATGAAGTCACACAGGTGGATAC
acattattgatttttttttgtttgatttttaatatttttagatattaaAT
AGTTTTGCTTGTGATCGATGTTGCTGAGTGCTCGGTGAAACCAGAGCcaa
gtaaaaaattaaaatgtatcTTTCATCACAACAGAAAGTAAAAGAGTATA
CTATTTAGAGTTTCGTGCTACTCTACTGCACTCTTGTCAAATgtacaaat
aaaattttatgtgtACATTTGTATTGACAAGAGTGCAGTAAACTCTGAAT
AGTGTACTTTCTGTTGTgatggaaaatatattttaatattCTATATATTC
AATATTAATGTACTTTTTTTGGAGTAATATCTAAGTGGTTAATGTTTTCC
ATCAGCTTCGACCTTCACTTCTCTATATTTCATGCAAACGGATTCAATGA
TTCGATGCAAACGAATAAAGTAAAGCAAAGTCTGTAACGATTTCATCTAT
ATTCTATCTCAGAGAGCTTTACAAAAAGTATGTTAAGCTTTACTACCAGA
AATTGTGCTTGGGATTCCAAAAAAACCCAGACCCAAATCATCTTGCTGTT
ATCAAGAAACTTATCAAGGTAAGAAGTGAtgaatttgttcttaggttttt
ggacctacctaaggtagtcctttaaattaacccttgtccgttcgttcgtt
cgtccgtccgttcgtccgtccgttcgttcgtccgttcgttcgttcgtctg
ttgccagcttttctcgggatcggctcattagttttttctaattttttgca
caatgatgCAAAATGGCAATGCCCAAAATGTGACGGAGCCTGATTTTCGA
gaaaaaaaaatttttccggccgaaaatggcgaaaatatgccggaaaaact
ggtttttcggcattttctgagatttcatcattagttttttctgatttttt
gctcaaagatgcgtattaacaatgcccaaaacatggcttagtccgatttt
tgagaaaaaattttttccggccgaaaatgccggaaatatgccggaaatcg
ccgtttttctggattttcattggacttttccatgtaattggttgtttttt
tcattcaaaaacattattaatagcaatgcccaccatcaagcatgtttcaa
tattcaattaaattgatttttgaagccggaactttctaaaaatcgccgga
acagccgattttcgccggaaaaatggtatttcttgaatttcttgagctgt
actatatatttttttcatgaaattttacacactgatgcaaaatatcaata
cctaaattgtgacggagcccgattttcaaaaaaattcatttccggccgaa
aatgccggaaatatgccgggaAAACTGGTTCTTTGGCATTTTcccgagat
tttatcattagttttttctgattttttgctcgaagatgcgtattaacaat
gcccaaaacatgaccgagtcagatttttgagaaaaaaattttttctggcg
gaaaatgcctgaaatatgccggaaattgctgcttttctagattttaattg
gacttttccatataattggttgttttttcattctaaaacattatcaaaag
caatgcccaccatcaagcatgtttcaattttcaataaaattgatttttga
agccggaactattttaaaagtctccggaacaacctattttcgccggaaag
acagtatttcttgaatttctcgagctgtactttatatatttttatgaaat
tttgcacactgatgcaatatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttgaaaaacatttttttcc
ggccgaaaatgccggaaatatgccggaaaaaccggttttttgactttttc
tcgaattttcatttttagttttttctgattttttccagaaagatgcgtat
tcgcaatgctcaaaaatgaccgagttcgatttttgagaaaattttttttc
cggtattgccggaaatcgccgtttttgcagattttcattggattttttcc
ttgtatttctatgtttttcacacaaaaatattattgataacaatgcttca
ccatcaagcatgattcaattgtcaataaaactgatttttgcgaccagaac
ttcctatttattttttccctacaacccttctctCTCCCCCCATCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNtaaatgctatattttctgactgattttttttcat
ttttcttttcgcattgctaactaactttcatcatcaggtaggtccattca
gcatgttgcttgtttattttgataaaatttctatatGTCATCCATTgata
aaatttatatcaatcaatcaatatttaTGTCATCCAGTCTCTAAACTATT
AACTAAACTATTATTTTTCTATGGATTATTATAATATACATTACACatga
gggggtttatctaaagaatcccaaatttactaaaaatagacaaaaaagaa
cgacaactttcataaaaactgaaaactttcataaaaaccgacAAATTCAC
CGTCAACAACCCCGACCTGGTTAGTTTGTCCACCCCTGCAAAAACAtccc
tctttgtttatcacggaaATTAACTACATTTGGTGCAGGATGCTTTAGAG
GACAGACTGACATAATAGACATACTTTATCTTTAAACACCTTTAAAATAA
GTGACCACGTACGGTACGGGTACTTTTTCGATATCCGTTTGTATTTAGGA
TGGCTGGAAATGATGATTTTATAACAGTTAAGAAAACTTTTATCGCCCTT
CCAAGAGTCTAGATATCAAATAATCTCAAAGTAGTCTACAAGTATCAAAT
GTCTCTTCTTTTTAGGAGCAAGAGGAGAATTTAGATGTGATCAATATTCT
TATTGCAAGAAATCAAGCCACGAATGAGGTGAGATGCTTACATAGCTTTA
TAAATACACATGCCGATTTTATTGGCCAACGCAAAGTCttcaattctcaa
cttcagttgagctagaatctgagaatgtctgtgtgtgcGTGTGTTTTTAT
ATGTCCCAAAATTTTGCGACTGtctgaagacttcaaaaatggtcggattc
ggctgaaatttggcactcAAGGAGCaaccttgggtgaatatctgagtttt
attttcatttatcaaGAATCTCAATTTTTGGAGCCTCTGGGGACGATTTT
tccgccaaaacgaggctaaaacttagGAGCAgcttggagacttcaaaaat
gttcGAATTTGGCTTCCTATGGGTCTGCTTTGTTAAAATATCTAGCAGTG
ATATTTttcgtttaaaatttttcaattttcggggcCTGGGCACTAAAATC
TTGTTGTTTGTTTTGCTACAATCGGGTCCATGAATAATCTGAAGTTATTG
AAGTTGAGCCCAATGCGTTGTGCAAGTTTGACTATatttttcatcgaata
aaggaACAATCtgtaaaaaattgcacattCTGTTGAGATTCTCATAATAA
TTTTCTACTCAATaataatgaagaagaagatttaATAGtttcaagtttgt
ttttaaCGTTGAAAAGTTCTAatgaatttcacaaaaaaacaaactacAAT
TCCAGTTAtgattcgaaaaaaaataaattaaaataagaTTTAGGTCATCA
ATAAGCTAACTTTAATTTGCAGTTTTTTGTCAGGTATCAAATATACCAAC
TACTTCTAGTACAATAAATTATCATGACAAAAATTAGCCTTCAAATACGG
TATATAGTTGCCATTGTTTTGATCTATTAAATCGAGCTGTTATGCATTAC
ATTTCacaagttttgagaattttctgGTTTGTTGACAGTAGTGGTCATTG
TGTCAACTGTGTACGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043832XLOC_043832Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070371-exon-scaffold_55-1491911889:274349..274368TCONS_00070371-exon-scaffold_55-1491911889:274349..274368Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1510915933:274349..274368TCONS_00070371-exon-scaffold_55-1510915933:274349..274368Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1575043694:274349..274368TCONS_00070371-exon-scaffold_55-1575043694:274349..274368Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1491911889:277828..277892TCONS_00070371-exon-scaffold_55-1491911889:277828..277892Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1510915933:277828..277892TCONS_00070371-exon-scaffold_55-1510915933:277828..277892Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1575043694:277828..277892TCONS_00070371-exon-scaffold_55-1575043694:277828..277892Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1491911889:278122..278160TCONS_00070371-exon-scaffold_55-1491911889:278122..278160Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1510915933:278122..278160TCONS_00070371-exon-scaffold_55-1510915933:278122..278160Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1575043694:278122..278160TCONS_00070371-exon-scaffold_55-1575043694:278122..278160Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1491911889:278332..278391TCONS_00070371-exon-scaffold_55-1491911889:278332..278391Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1510915933:278332..278391TCONS_00070371-exon-scaffold_55-1510915933:278332..278391Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1575043694:278332..278391TCONS_00070371-exon-scaffold_55-1575043694:278332..278391Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1491911889:279454..279513TCONS_00070371-exon-scaffold_55-1491911889:279454..279513Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1510915933:279454..279513TCONS_00070371-exon-scaffold_55-1510915933:279454..279513Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1575043694:279454..279513TCONS_00070371-exon-scaffold_55-1575043694:279454..279513Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1491911889:280043..280120TCONS_00070371-exon-scaffold_55-1491911889:280043..280120Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1510915933:280043..280120TCONS_00070371-exon-scaffold_55-1510915933:280043..280120Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1575043694:280043..280120TCONS_00070371-exon-scaffold_55-1575043694:280043..280120Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1491911889:280450..280504TCONS_00070371-exon-scaffold_55-1491911889:280450..280504Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1510915933:280450..280504TCONS_00070371-exon-scaffold_55-1510915933:280450..280504Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1575043694:280450..280504TCONS_00070371-exon-scaffold_55-1575043694:280450..280504Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1491911889:281036..281109TCONS_00070371-exon-scaffold_55-1491911889:281036..281109Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1510915933:281036..281109TCONS_00070371-exon-scaffold_55-1510915933:281036..281109Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1575043694:281036..281109TCONS_00070371-exon-scaffold_55-1575043694:281036..281109Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1491911889:281283..281336TCONS_00070371-exon-scaffold_55-1491911889:281283..281336Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1510915933:281283..281336TCONS_00070371-exon-scaffold_55-1510915933:281283..281336Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1575043694:281283..281336TCONS_00070371-exon-scaffold_55-1575043694:281283..281336Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1491911889:281792..281898TCONS_00070371-exon-scaffold_55-1491911889:281792..281898Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1510915933:281792..281898TCONS_00070371-exon-scaffold_55-1510915933:281792..281898Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1575043694:281792..281898TCONS_00070371-exon-scaffold_55-1575043694:281792..281898Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1491911889:282316..282390TCONS_00070371-exon-scaffold_55-1491911889:282316..282390Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1510915933:282316..282390TCONS_00070371-exon-scaffold_55-1510915933:282316..282390Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1575043694:282316..282390TCONS_00070371-exon-scaffold_55-1575043694:282316..282390Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1491911889:282861..282966TCONS_00070371-exon-scaffold_55-1491911889:282861..282966Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1510915933:282861..282966TCONS_00070371-exon-scaffold_55-1510915933:282861..282966Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1575043694:282861..282966TCONS_00070371-exon-scaffold_55-1575043694:282861..282966Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1491911889:285464..285526TCONS_00070371-exon-scaffold_55-1491911889:285464..285526Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1510915933:285464..285526TCONS_00070371-exon-scaffold_55-1510915933:285464..285526Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1575043694:285464..285526TCONS_00070371-exon-scaffold_55-1575043694:285464..285526Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1491911889:286437..286465TCONS_00070371-exon-scaffold_55-1491911889:286437..286465Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1510915933:286437..286465TCONS_00070371-exon-scaffold_55-1510915933:286437..286465Clytia hemisphaericaexon
TCONS_00070371-exon-scaffold_55-1575043694:286437..286465TCONS_00070371-exon-scaffold_55-1575043694:286437..286465Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:274349..286465 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.592928	0.631297	4.50405e-08	0.0864904	1.02857	0.394182	0	0.231039	0	2.01912	2.59925	0	1.1011	0.747976	0.120694	0.0562004	0	0	1.36085	0	0	4.93657e-08	1.55279	0	0	0	0.192318	0.0362393	1.11315	1.24381e-07
Blast
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BLAST of TCONS_00070371 vs. Swiss-Prot (Human)
Match: VP13C (Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.768e-38
Identity = 94/282 (33.33%), Postives = 152/282 (53.90%), Query Frame = 2 
Query:   29 AADDTLAEKLQAQILKNLQVRIKNIHVRYEDKTTIPGQPFSVGAMLYSVTSETTTANWIPTIIDGSVRKFYKMVNLDSLSLYWNSNTQFS-MTSNENWKALMKSQV-TNQSSKTHIDYILEPLSLAVHMEVDQDARVSMEYPKFLMQVILKELTLSLSKEQFNGIMKLLDSFMLMEVNQIYRKYKPLKTVKEDPKAWWQYILKSYTETSYKQ----WTWEYMKSHREXXXXXXXXXXXXXXXGFQKNPDPNHLAVIKKLIKEQEENLDVINILIARNQATNE 856
            A  DT  EKL  Q++KN+QV+I +IH++YED  T P +P S G  L  ++  T   +W P I++ + +  YK++ LDSLS YWN N   S   S E     +K+++ T+ +   +  YI +P+S +  + ++  A   ++ PK    + ++ + + L+K Q+  ++ LL+S   M  N  YRKYKP   +  + + WW+Y + S  E   ++    W+W  +K HR+L K Y   Y  KL               I+K I++ E+ LDV NI++AR QA  E
Sbjct:  177 AKKDTFVEKLATQVIKNVQVKITDIHIKYEDDVTDPKRPLSFGVTLGELSLLTANEHWTPCILNEADKIIYKLIRLDSLSAYWNVNCSMSYQRSREQILDQLKNEILTSGNIPPNYQYIFQPISASAKLYMNPYAESELKTPKLDCNIEIQNIAIELTKPQYLSMIDLLESVDYMVRNAPYRKYKPYLPLHTNGRRWWKYAIDSVLEVHIRRYTQMWSWSNIKKHRQLLKSYKIAYKNKLTQSKVSEE-------IQKEIQDLEKTLDVFNIILARQQAQVE 451
The following BLAST results are available for this feature:
BLAST of TCONS_00070371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VP13C2.768e-3833.33Vacuolar protein sorting-associated protein 13C OS... [more]
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