TCONS_00070370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070370
Unique NameTCONS_00070370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070370 ID=TCONS_00070370|Name=TCONS_00070370|organism=Clytia hemisphaerica|type=transcript|length=1280bp
TGAAAAAACAGAAAGTCCTGAAAATGGGACTGCTGCTGATGACACGTTAG
CAGAAAAGTTGCAGGCTCAAATCTTGAAGAACTTACAGGTTCGAATAAAG
AATATCCATGTTCGATATGAAGATAAGACGACGATACCTGGCCAACCATT
TTCAGTTGGTGCAATGTTGTACAGTGTCACTTCAGAGactACCACAGCCA
ATTGGATACCAACAATTATCGATGGTTCTGTCAGAAAGTTTTATAAAATG
GTAAACCTGGATTCCCTATCACTGTACTGGAATTCCAACACTCAATTTTC
GATGACTTCGAATGAAAACTGGAAGGCGCTGATGAAAAGTCAAGTGACAA
ATCAATCTTCAAAAACTCACATTGATTACATCCTTGAACCGTTGTCATTG
GCAGTACACATGGAAGTTGACCAAGATGCTCGAGTATCCATGGAATACCC
AAAATTTCTGATGCAAGTTATTTTGAAGGAATTGACTTTGAGCCTTTCTA
AAGAGCAGTTCAATGGCATCATGAAGCTACTGGATTCATTTATGTTGATG
GAAGTCAATCAAATTTATCGAAAGTACAAACCATTAAAAACTGTCAAGGA
AGACCCCAAAGCTTGGTGGCAGTATATTTTGAAGAGTTACACAGAGACTT
CTTATAAACAATGGACTTGGGAATACATGAAGTCACACAGAGAGCTTTAC
AAAAAGTATGTTAAGCTTTACTACCAGAAATTGTGCTTGGGATTCCAAAA
AAACCCAGACCCAAATCATCTTGCTGTTATCAAGAAACTTATCAAGGAGC
AAGAGGAGAATTTAGATGTGATCAATATTCTTATTGCAAGAAATCAAGCC
ACGAATGAGATTTTATCTCATCCACGTGTCTGTCAAGATAATAGGATGAC
TGCTTTTCCCACACAGTTATGTTGTAATTTGCTGGATCGAATGGTCTTGT
TTCATTTCTATTGTACTCCTGATCCTGACGTTCAGCCGTCAGCCATATTA
ATTGAGTGTGGGGGCGATCTTTATTAAGAAGAATTGAGTTCACAGTGAAG
AGAGCTATCGAAACTACCCACATTGCGAGACAGGCGAAAACAGcatgttt
cttttttatgcaACGATGTTTAAATGGGAAGACCATTGCCAGTACTCGAT
CAACTGTCAATGTCAGCAAGCTGAAAATTGACATAAGGAGGCTGATTCGA
AGCCCCCCAATAACCAAACTCAGAATCTGTAAGCGGACGATTGGAGCTTC
CTTACTTGTTAAGTTCTTAAGAGCCGTAAG
Run BLAST on NCBI

transcript from alignment at scaffold_55:274346..288096+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070370 ID=TCONS_00070370|Name=TCONS_00070370|organism=Clytia hemisphaerica|type=transcript|length=13751bp|location=Sequence derived from alignment at scaffold_55:274346..288096+ (Clytia hemisphaerica)
TGAAAAAACAGAAAGTCCTGAAAGTGAgttataatgtttttttttgtgtc
gGTTTCAGTCTTTATGTATTCTTTTCTTCATTAATATCCCATCCCCTTTG
GTTATGGCAGGTTGTGtttaaaatcaccaaaattgttcaaaaattaAACT
GGAAGAAATGAACAAAACCCTGAAATTCTAAAACCCTACAATTGGTTCTT
ATAACAAGAAAGTTTTGTTGACCTTTGCCTTTGACGATTCGAACATTTGC
TTTTGAAGATATtgcaaagtgtttttttttctggttttatcaTCAGGACA
TATAATTTGCTtccataaaatatcaaaacaaacaacaagTTTGCGATCGT
TATAATCAATACACGAGCAACAATTTTGATgcttttgtctttttgaagaa
attgaaatGGAGAGTATGTCATGTATGTCACAATACTAGTATGTAAACGA
CGAATAAATGATTGGTATTGCATTGGCCATTTAAACGAATGAAGGAGTCC
TGGATTAGTGTCTTGATAGTTTCGATTCGACCCTTTGTCTTGATAATTCG
AACATCTCTTTTTGTAGATATTCACGAGTGTTTCTATGAGGTTTCCTAAA
TATAATGTAAAGTTTATtaccataaaatatcaaaacaaatagCAAGTTAG
CAATCGTAATAATCAATACACGAGCAACAATTTTAATGTTTTcgtctttt
tgaagaaaatgaagtgGAAAATAGGTCATGTATGTCACAATACTTGTAAA
TGACGAATAAACGATTGGCATTGCTTCATTGAAAGGTCCAGGAAGATTAC
GACCACGATAAGCTTGAATGGATGATATGAGGTGCAGGATAATGTTCAAA
ACTATTTGCACAGTCATATGCGATGTTGTGTTGCAGTGGTAGATCTTGGT
ATATGTGGAGTGGTTTATTTTAACATCCAATTTTGTTGGCGTTCGATTTA
AACTTAAAAACAATGCCAATAAATCAAGCAATATCAAAATCATCACAATG
AAGATTTGGGACATGAAAGTCTGTCGTTTCTGTTTTTCTGTCAATCTTAG
CTTCGaattaaaagcagtcaatagaTTTTGACATTTGATGAAAATCAATG
TCTGAGGAGAAAATGCCAGTATTGAGGTGACTATCAGGTCCATCAAGCAA
GTCATTTTTGTTGATTCGTTAGAAATCGAAAATGGTACAGGGATAGTGGA
AAACAAAAGTAACATTAACACAAAATGTAACATTATAATTGGAAAATTGG
ATCCACGGACTATAACCGTGTCCCTTTTTCTAATGAATATGACGATAGTT
GTGATGATAAATACAACACCAAGTGTACACAATACAGTAGAAATCATCAA
CCCTTTCTGGTTTTTGAGCTTCAAATGTATTGTCGAGTATGGATCATAAC
AAGAGTCTCGTTTCGGGGAAGATAATTTATATTTTGGACAAGGAGAGCAA
GTACTGTATAATTGTTTATCGTTGGGTTGGAAATGATCGCCAGAACATTG
TTGGCAACTCCAGCCATACGATGAGCTACTCCATATTCCACGGCTTTGTG
CAGGTAGTatgtcaaaaacattttcactaCCTATTCTGCATTCTGGAACA
GGACATTCTTGTGTATGGTATCTAACAACACTATACCCAATAACTGGAAC
AAATGCTCTCTTGCTTGTCTCTCGGACTTCGATTTTGCCATGAACATAAT
ACATAAATCTCAACTGACTTTTATTCGAATTACTTCTCTTTATCAACGCA
CCTTTAAACCTGTCAAAAGTCATGTATCTAAATATGTTCATTGTTCTATA
GATTTGTATCAGTTGAGCCATTTTTAAAAGATGTGTGTCCATTGATTGGA
TACAATTAAAGACTGTCAACTTTTCCTGTACCCTCGATGTTATCgataat
ttcttttcaatatgaGTTAAACCAGCCTcataaaaaatcactttttcagA
ACTCATTGTGCTGAATGTAAAGAGATCAATGGTGTGCCAGTGTTCAGTGG
AGGTTGAATCTTGATGCATATCTAACAAGAAGACATTTAATTTGAGATCC
AAAAACATGAAGTGAATACTATATCTAGTCATGAAtatatttgattggtt
tatATCGCCCAGAACCATAATGATCTGCCATTGGTTGATCTGTTCTATTA
CTTTGAAAAGTGCTTTCGTATCGTTTTGACTATTCGACAATGTTATGGTG
TAAAACTTAGGACAAAGTCCCAACTCTGGAGTATATTCTTGAATCACTTT
GTAAAAATGTTCATAGTCCAATTTGGTGAAAGTTAAATTGCTCTCAAGGT
AAACAATAATGAAATTTTTgtgttgatttatattcatgtTCCAATAGCCT
GCAAAACTTTGCAGATTAAGGTTTCTGTTAGCCTGATTGTTGAAATAATA
TAGGAAGTTTCTTGCATTCACATCAAACATATTAGCGTCACTGTGCAGGT
TTTTTCGTTGTAACGACACCGGAATTATATCTTCTATATTAACAAATCTG
ACTACAAAGTCTTCAccgaaaaatatttcttgtaacAGTTTGGAGATTGT
TTTTGGTGCATGTATAATAACAAGAATAATTCTTGAAGTATATTGCCAAG
ACTTAATGTTCCTTTTGTTCCATTTGGGAATTTGATGTTGTTCGTTCTTG
GTGACCATATAGCTTTCGTTAACTTTCAAGTTCAACGCTATTTCCAATGC
TTGTGTTGTGCTACAAAAGTTGATCACTTGATATTCAATATCATTATCAT
TCATTGTTAATAAGTTGCCAACCTTATTAAAATCCTTATTTCTTAAGAAT
TGGAACCACTTTGACTTCTTATGTTGGTACGCGTAATCAATAgcattttt
acaaatatttgaTTGAGTGACATTTTCATCTCCTGAACACTGATGGTAAA
GTCCCACAATGAGCATAGGATTACCACCTGGTCTTAGAGTTGTAGATAAT
GATACTTTAGAAAACAAGATCTTCAAAATATTGAGAATGAGAAGTTGTTT
CATCATTCAATCGCTTTGTCTCTTATACTACCACGTCTAGCGATATGTAC
CTTTGagatttttatatttcataGCTACCAAGAAATTTTGGTGTTCTCAA
AGTATTTTCTTCTTACTCTTTGGCTGAGCTTAAAAGTCATCCATGCAGGT
GTATTTTTAAGAGagaagagagagagaaaaagagaaaggTTCAAACCCTC
ATTAtaatattcaagaaaaacctttaaaatgaaAGTTTTAATATCTTGAG
ACTATTAGTTTTGACTCATGATAattaaaaatgtcaatatgtgtctatta
aaaaaactctttaactcgaacctctacaactcgaatgcttccttaactcg
aataagtTAAACCTTACTCAATACATAACTGAAAATATCCTCatcttgaa
caaatttgtgttctctTTATTAAGGCTCAAACGTAAAAGAAGTTCTGATT
TAATTTAATATATCCTTTCCATTTCATTTTAGATGGGACTGCTGCTGATG
ACACGTTAGCAGAAAAGTTGCAGGCTCAAATCTTGAAGAACTTACAGGTA
CCATAGTCATAATATTTAAGTATTTAGTTTCAATTGAAGGCCTCCTTTTA
TAGCTTCTATGGAATTCGCTTctatatttaatttttcaatgtcCCCTCCc
gctttttaataagaatatactCCCAAAATGGAATAACTATTTTTTTTTGG
TCGAGACTGATAACATATAGGGAAGAAACAACCAGATGAACCATTTTAAG
AATGATTGTATTGTAATTTTTCTTAGGTTCGAATAAAGAATATCCATGTT
CGATATGAAGATAAGGTACATGCTTGATAATTACTGTTAAGGTTATAATT
TATACTGATCTATATTATATTTCTGCCACTCTGCTCACTGGCATTTCTTT
AATTCGTGCACTTTTCAGATACAATTTtgacaatttcaaaatttaatttt
cctcAACAACATTAATggaattgaatttttatttagACGACGATACCTGG
CCAACCATTTTCAGTTGGTGCAATGTTGTACAGTGTCACTTCAGAGGTAT
TTTATTCTTGAAACtggcaaaattaaaaagctgaCTGGgaaaaaccattg
agtttaaagcccgaagggtactaatgtaacattccaaaggtagttgaaac
tgtaaaggtgaaaaaaaaagaatatttacctttcaatgggtACCTTTCat
aatcagtccaaaagttgatgcatgcacctcaaaaaccaaagagattcgtt
ggttttcagggccatctttgttgttttgaaaatgaaacgcagaaaaaaag
actgggcccagacatctggaagaagcgggaaaaaagcaaaggagataaag
ttttggtactattactattatttgtacaaaagttgcaattttcataaaac
taTTCTACATTATAATACTCAACACATAGATTatattctattaaaataag
aaatttatgaaacaaatacttcaaatagtgctaaactaattttaacccca
tccaacacgaagcaaagtcgatatttcgccatcccaccggctcattttca
gaaattttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatata
cagatttttttacgccacgcgcagatctagagaaaggatgctacactccc
tattcgggcgcttcgcgccctcaaaacggtcgttccgcaaaaagCTGACT
GGgaaaaaccattgagtttaaagcccgaagggctagagttcaatctctaa
cctttcttttctcaggcaagaaaaagtgaagtgatatttttttcagattt
agcggtaaattttagtttcaatctgtcatttgtgtaaaaaccaggcgagc
cgctcaaggccgcgcaactttggtaggatttgttggcttcaaatcctacc
aaggagattgacttctagcccttcgggcttatacttcattggggaAAACT
TGAACTCAAATTAAAGATAAAGTGATTACGAATCAAAGtttcgatttttt
tgttttagactACCACAGCCAATTGGATACCAACAATTATCGATGGTTCT
GTCAGAAAGTTTTATAAAGTACCatcttattagttttttttatactTTCA
TTCTGAGTACACCTGCTGCTTGTGTAAGCCTATACTTGTGATAAAATACA
TAGTGCTGCTcgaaaatattatataaaggAGGGCCTGCTCACATTTCAAG
TTGTaagcacagatatctgtaaagcccgaagggctagataggcaacttta
actTTCTCCAGAAAAAAAAGTGACGCAAAACATTGTAAATGAAACAAGTA
AAACAAGTTGTAAGTAGCCCCACCTCAATGCAACACATTCTTACATTTTT
TAGCAGCAGCTTTTGCTGACAATTAAAAAAAGCAATAatttttattcatg
atatgcaccactgagAGTCttttgagaacttttaaaattttccactcaat
acgtcactttaaacaatagaaaaagtgacgtattgggtgaaaatttttga
aaactcttggagactctccagtgttgcatatcatgaataatgtGTTTAAT
GTGATTTTGAGAGAAGAGTAAAGTTGAAGATCAAACATCCTTTTCAGATG
GTAAACCTGGATTCCCTATCACTGTACTGGAATTCCAACACTCAATTTTC
GATGACTTCGAATGAAAACTGGAAGGTATTATAATTAAATTATCCGTCTG
AGTGACCGTGTAGTGCGATGGTAGAACTTTCGGCTACGATGCGCAAGGTT
TTGGGTTCACTAAAGACTTTATACTAAGTACAACAAATTGCACTTGATGC
TTCTCTGCTTGTAGATAGCTATTGAAAGAGGGACCTTTGGATATGCCGAC
TGCAGATGCGTTGCAAACTTACTTAAAACTATCCATCTGATATGGATGAA
AATCATGATTGTTTTTACCATTCATCAAATTACGATTATTCATCATTTAC
AATACTACAACTAAAAGTTTTAATATGCTTCCATCGCATGTTGTTTCACT
TTAGGCGCTGATGAAAAGTCAAGTGACAAATCAATCTTCAAAAACTCACA
TTGATTACAGTAAGGATCTATCTGATATACTTAAGACAAATAGTAATACT
TAATAAACAAGAAGCATGTCTGTTACTGTGCTATCGTGTATCGATTTCAC
AATACACCGTGGATGAGAGAAGAGTGCACTGATCTTGTTCCCCAGTGGTT
CGCGCTCGATTAATGCACTTGATATGAAAAGCTGCGTATCAGTGTCTGGC
AAGCTGGTTGGCAGTATAAAATACAACGTAAGGTGGTTCTAACGAGATGA
CTCCCTAGACCGCTCAATATAGCGGGCATCTTCTGTAAGGGGAAGCCATA
CATCAATAGTAAACGTCGTGTTCAACTCAACGACTGAAATGTTGAGATAA
AGGAGGGTTATACTTATCAGATTTTCTAAACTTAGAAAGGATGACTTTCA
TTTCTCTAATAATACTTACGATATCGTATTTTGACGAACACAATATTGAA
GTTTGATATCTCGAGTCTTTATACAATCTCTATTCGGCAATTTTGGACTC
GTTTTgtgttttttattcatttttcctAAATGTTTCATAGTCCTTGAACC
GTTGTCATTGGCAGTACACATGGAAGTTGACCAAGATGCTCGAGTATCCA
TGGAATACCCAAAAGTATGTTTATCACATCAATAACTTTATAGTTATGGA
CTTAATTTTTTAATCTGTGATTTTTATATAACTCGTACTTGCATTAATGG
ATTGTCTTTTATTAGGCTTAAATGATGATGGTTagttcttaaaatgtttc
aaaattcaataaatgtaaCATCTTCTTTCTCTTTTAGTTTCTGATGCAAG
TTATTTTGAAGGAATTGACTTTGAGCCTTTCTAAAGAGCAGGTATAAAGT
CTATGTTTTTGAACATCTTTAGCTTTTcgattactcttaggttccaaata
aacgcccctccccccgcttgttaatttttcgaaaattttccaaccccctg
gaccttattattttcagctgtcccttatttttctttaaatagcctgatat
ttaccttattttttggttttcagaagtacaattttcccggcaattaggcc
ccccgtttattcgaacccccccccccgtttatttggaacctaagagtaaa
gaACAGACTTAGGAATCTTTGCTATTACATAAACTCTGAGGGTTGCTGAT
AGATTTTGGCCTTGAATGGAACTTTGTGCTTGTCATAAAAACAAAGTTCT
TGTGTCAACTGAAAAGTTGTTTAAATTCGACTTACGATTTTAAATCCTTT
GATTTTTCACACGTATAATTTAGCATTTAACTGTATTATTTAATAGTTCA
ATGGCATCATGAAGCTACTGGATTCATTTATGTTGATGGAAGTCAATCAA
ATTTATCGAAAGTACAAACCATTAAAAACTGTCAAGGAAGACCCCAAAGC
TTGGTAAATAAATGATGTGCTTTTCAGCCATTAGAAATAattcttaaaag
tttcgaaaaaaaagattCAGATTCATGTATAATATGATGCAGTTGGCTTC
CTCCAATTcgatctttcaaatttttctttaattataGAAGGATTGGAATT
ACAGGGAGTAATTTATACGACTTTTGAGCTGGATTGGCCAATActtaagt
tcgaattacagaaaattcGAATAGAGGCTCGAATTATAAAGAGTTGGCTG
TATATTTTTTGTCAGTTGTCTTTGCTGACAAGGAAtgcattatttttttt
gtttttgaatcgaAGACGTCATGACAACGTCAATCTCTTTACAAATAAAG
GTCTACCTGAGAATTAGTTTTTCTGAAACATAAAGCTATACTCTACTTTT
ATCATCTGTTTGCATTTTAGGTGGCAGTATATTTTGAAGAGTTACACAGA
GACTTCTTATAAACAATGGACTTGGGAATACATGAAGTCACACAGGTGGA
TACacattattgatttttttttgtttgatttttaatatttttagatatta
aATAGTTTTGCTTGTGATCGATGTTGCTGAGTGCTCGGTGAAACCAGAGC
caagtaaaaaattaaaatgtatcTTTCATCACAACAGAAAGTAAAAGAGT
ATACTATTTAGAGTTTCGTGCTACTCTACTGCACTCTTGTCAAATgtaca
aataaaattttatgtgtACATTTGTATTGACAAGAGTGCAGTAAACTCTG
AATAGTGTACTTTCTGTTGTgatggaaaatatattttaatattCTATATA
TTCAATATTAATGTACTTTTTTTGGAGTAATATCTAAGTGGTTAATGTTT
TCCATCAGCTTCGACCTTCACTTCTCTATATTTCATGCAAACGGATTCAA
TGATTCGATGCAAACGAATAAAGTAAAGCAAAGTCTGTAACGATTTCATC
TATATTCTATCTCAGAGAGCTTTACAAAAAGTATGTTAAGCTTTACTACC
AGAAATTGTGCTTGGGATTCCAAAAAAACCCAGACCCAAATCATCTTGCT
GTTATCAAGAAACTTATCAAGGTAAGAAGTGAtgaatttgttcttaggtt
tttggacctacctaaggtagtcctttaaattaacccttgtccgttcgttc
gttcgtccgtccgttcgtccgtccgttcgttcgtccgttcgttcgttcgt
ctgttgccagcttttctcgggatcggctcattagttttttctaatttttt
gcacaatgatgCAAAATGGCAATGCCCAAAATGTGACGGAGCCTGATTTT
CGAgaaaaaaaaatttttccggccgaaaatggcgaaaatatgccggaaaa
actggtttttcggcattttctgagatttcatcattagttttttctgattt
tttgctcaaagatgcgtattaacaatgcccaaaacatggcttagtccgat
ttttgagaaaaaattttttccggccgaaaatgccggaaatatgccggaaa
tcgccgtttttctggattttcattggacttttccatgtaattggttgttt
ttttcattcaaaaacattattaatagcaatgcccaccatcaagcatgttt
caatattcaattaaattgatttttgaagccggaactttctaaaaatcgcc
ggaacagccgattttcgccggaaaaatggtatttcttgaatttcttgagc
tgtactatatatttttttcatgaaattttacacactgatgcaaaatatca
atacctaaattgtgacggagcccgattttcaaaaaaattcatttccggcc
gaaaatgccggaaatatgccgggaAAACTGGTTCTTTGGCATTTTcccga
gattttatcattagttttttctgattttttgctcgaagatgcgtattaac
aatgcccaaaacatgaccgagtcagatttttgagaaaaaaattttttctg
gcggaaaatgcctgaaatatgccggaaattgctgcttttctagattttaa
ttggacttttccatataattggttgttttttcattctaaaacattatcaa
aagcaatgcccaccatcaagcatgtttcaattttcaataaaattgatttt
tgaagccggaactattttaaaagtctccggaacaacctattttcgccgga
aagacagtatttcttgaatttctcgagctgtactttatatatttttatga
aattttgcacactgatgcaatatNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttgaaaaacatttttt
tccggccgaaaatgccggaaatatgccggaaaaaccggttttttgacttt
ttctcgaattttcatttttagttttttctgattttttccagaaagatgcg
tattcgcaatgctcaaaaatgaccgagttcgatttttgagaaaatttttt
ttccggtattgccggaaatcgccgtttttgcagattttcattggattttt
tccttgtatttctatgtttttcacacaaaaatattattgataacaatgct
tcaccatcaagcatgattcaattgtcaataaaactgatttttgcgaccag
aacttcctatttattttttccctacaacccttctctCTCCCCCCATCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNtaaatgctatattttctgactgatttttttt
catttttcttttcgcattgctaactaactttcatcatcaggtaggtccat
tcagcatgttgcttgtttattttgataaaatttctatatGTCATCCATTg
ataaaatttatatcaatcaatcaatatttaTGTCATCCAGTCTCTAAACT
ATTAACTAAACTATTATTTTTCTATGGATTATTATAATATACATTACACa
tgagggggtttatctaaagaatcccaaatttactaaaaatagacaaaaaa
gaacgacaactttcataaaaactgaaaactttcataaaaaccgacAAATT
CACCGTCAACAACCCCGACCTGGTTAGTTTGTCCACCCCTGCAAAAACAt
ccctctttgtttatcacggaaATTAACTACATTTGGTGCAGGATGCTTTA
GAGGACAGACTGACATAATAGACATACTTTATCTTTAAACACCTTTAAAA
TAAGTGACCACGTACGGTACGGGTACTTTTTCGATATCCGTTTGTATTTA
GGATGGCTGGAAATGATGATTTTATAACAGTTAAGAAAACTTTTATCGCC
CTTCCAAGAGTCTAGATATCAAATAATCTCAAAGTAGTCTACAAGTATCA
AATGTCTCTTCTTTTTAGGAGCAAGAGGAGAATTTAGATGTGATCAATAT
TCTTATTGCAAGAAATCAAGCCACGAATGAGGTGAGATGCTTACATAGCT
TTATAAATACACATGCCGATTTTATTGGCCAACGCAAAGTCttcaattct
caacttcagttgagctagaatctgagaatgtctgtgtgtgcGTGTGTTTT
TATATGTCCCAAAATTTTGCGACTGtctgaagacttcaaaaatggtcgga
ttcggctgaaatttggcactcAAGGAGCaaccttgggtgaatatctgagt
tttattttcatttatcaaGAATCTCAATTTTTGGAGCCTCTGGGGACGAT
TTTtccgccaaaacgaggctaaaacttagGAGCAgcttggagacttcaaa
aatgttcGAATTTGGCTTCCTATGGGTCTGCTTTGTTAAAATATCTAGCA
GTGATATTTttcgtttaaaatttttcaattttcggggcCTGGGCACTAAA
ATCTTGTTGTTTGTTTTGCTACAATCGGGTCCATGAATAATCTGAAGTTA
TTGAAGTTGAGCCCAATGCGTTGTGCAAGTTTGACTATatttttcatcga
ataaaggaACAATCtgtaaaaaattgcacattCTGTTGAGATTCTCATAA
TAATTTTCTACTCAATaataatgaagaagaagatttaATAGtttcaagtt
tgtttttaaCGTTGAAAAGTTCTAatgaatttcacaaaaaaacaaactac
AATTCCAGTTAtgattcgaaaaaaaataaattaaaataagaTTTAGGTCA
TCAATAAGCTAACTTTAATTTGCAGTTTTTTGTCAGGTATCAAATATACC
AACTACTTCTAGTACAATAAATTATCATGACAAAAATTAGCCTTCAAATA
CGGTATATAGTTGCCATTGTTTTGATCTATTAAATCGAGCTGTTATGCAT
TACATTTCacaagttttgagaattttctgGTTTGTTGACAGTAGTGGTCA
TTGTGTCAACTGTGTACGGGATGGTACCTCGTTTCTCGAGCAAAACTTGA
TCTTGTTCATAATTTTGAAGTACAGAAATGGATTGATGATGGAATTCAAA
GCAGCCAAAGGGACAAAATACATTTCATAAACAATTGTAAGGTTAGCAGA
TGATCTCGTGGCAAAAAGTGTAGCAAAGATGGCAAAGGGAAACCAACATA
CGACAAAAGCCAGTACGATAGCAACAGAGAGAACGATAAATTTCCtctct
tttttgtttcttcGAATTTCACATGGACTTAAAGATACATTGTTTTCCTT
GTTCCTCAGATTCTTTTTACTTTGTTTCATTTTATACCATATCAAGGAAT
AAGcaacaaatagaaaaaaagtagTCGTATAAACCATCGTGGATGTTAAT
ATGTACTCAAAGTCACCAAGTCTTTCTGAACGGTATCCGTATCTGTTAGA
GATTTCAGATAAATTGGCTATATTGTTATCCATAAATATGTTTGGATCTT
TCATTCTTTCTGCCATGTCTTGATAGGCGTCCACAAATTCAAGCCATGTT
AATTTTTCTATAGATTTTATCTCATCCACGTGTCTGTCAAGATAATAGGA
TGACTGCTTTTCCCACACAGTTATGTTGTAATTTGCTGGATCGAATGGTC
TTGTTTCATTTCTATTGTACTCCTGATCCTGACGTTCAGCCGTCAGCCAT
ATTAATTGAGTGTGGGGGCGATCTTTATTAAGAAGAATTGAGTTCACAGT
GAAGAGAGCTATCGAAACTACCCACATTGCGAGACAGGCGAAAACAGcat
gtttcttttttatgcaACGATGTTTAAATGGGAAGACCATTGCCAGTACT
CGATCAACTGTCAATGTCAGCAAGCTGAAAATTGACATAAGGAGGCTGAT
TCGAAGCCCCCCAATAACCAAACTCAGAATCTGTAAGCGGACGATTGGAG
CTTCCTTACTTGTTAAGTTCTTAAGAGCCGTAAGATGTATTGTGGTTGCA
GCAAATACGGCTACTGTTATTCCTAGCATGACGTCTGAAGTGGCCAGATT
AAGGAGATAAATCTGTGATATGTGTAGTTTCTTTTTCATTTNCTGAACGG
TATCCGTATCTGTTAGAGATTTCAGATAAATTGGCTATATTGTTATCCAT
AAATATGTTTGGATCTTTCATTCTTTCTGCCATGTCTTGATAGGCGTCCA
CAAATTCAAGCCATGTTAATTTTTCTATAGATTTTATCTCATCCACGTGT
CTGTCAAGATAATAGGATGACTGCTTTTCCCACACAGTTATGTTGTAATT
TGCTGGATCGAATGGTCTTGTTTCATTTCTATTGTACTCCTGATCCTGAC
GTTCAGCCGTCAGCCATATTAATTGAGTGTGGGGGCGATCTTTATTAAGA
AGAATTGAGTTCACAGTGAAGAGAGCTATCGAAACTACCCACATTGCGAG
ACAGGCGAAAACAGcatgtttcttttttatgcaACGATGTTTAAATGGGA
AGACCATTGCCAGTACTCGATCAACTGTCAATGTCAGCAAGCTGAAAATT
GACATAAGGAGGCTGATTCGAAGCCCCCCAATAACCAAACTCAGAATCTG
TAAGCGGACGATTGGAGCTTCCTTACTTGTTAAGTTCTTAAGAGCCGTAA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043832XLOC_043832Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070370-exon-scaffold_55-1491911889:274346..274368TCONS_00070370-exon-scaffold_55-1491911889:274346..274368Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1510915933:274346..274368TCONS_00070370-exon-scaffold_55-1510915933:274346..274368Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1575043694:274346..274368TCONS_00070370-exon-scaffold_55-1575043694:274346..274368Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1491911889:277828..277892TCONS_00070370-exon-scaffold_55-1491911889:277828..277892Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1510915933:277828..277892TCONS_00070370-exon-scaffold_55-1510915933:277828..277892Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1575043694:277828..277892TCONS_00070370-exon-scaffold_55-1575043694:277828..277892Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1491911889:278122..278160TCONS_00070370-exon-scaffold_55-1491911889:278122..278160Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1510915933:278122..278160TCONS_00070370-exon-scaffold_55-1510915933:278122..278160Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1575043694:278122..278160TCONS_00070370-exon-scaffold_55-1575043694:278122..278160Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1491911889:278332..278391TCONS_00070370-exon-scaffold_55-1491911889:278332..278391Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1510915933:278332..278391TCONS_00070370-exon-scaffold_55-1510915933:278332..278391Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1575043694:278332..278391TCONS_00070370-exon-scaffold_55-1575043694:278332..278391Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1491911889:279454..279513TCONS_00070370-exon-scaffold_55-1491911889:279454..279513Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1510915933:279454..279513TCONS_00070370-exon-scaffold_55-1510915933:279454..279513Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1575043694:279454..279513TCONS_00070370-exon-scaffold_55-1575043694:279454..279513Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1491911889:280043..280120TCONS_00070370-exon-scaffold_55-1491911889:280043..280120Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1510915933:280043..280120TCONS_00070370-exon-scaffold_55-1510915933:280043..280120Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1575043694:280043..280120TCONS_00070370-exon-scaffold_55-1575043694:280043..280120Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1491911889:280450..280504TCONS_00070370-exon-scaffold_55-1491911889:280450..280504Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1510915933:280450..280504TCONS_00070370-exon-scaffold_55-1510915933:280450..280504Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1575043694:280450..280504TCONS_00070370-exon-scaffold_55-1575043694:280450..280504Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1491911889:281036..281109TCONS_00070370-exon-scaffold_55-1491911889:281036..281109Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1510915933:281036..281109TCONS_00070370-exon-scaffold_55-1510915933:281036..281109Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1575043694:281036..281109TCONS_00070370-exon-scaffold_55-1575043694:281036..281109Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1491911889:281283..281336TCONS_00070370-exon-scaffold_55-1491911889:281283..281336Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1510915933:281283..281336TCONS_00070370-exon-scaffold_55-1510915933:281283..281336Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1575043694:281283..281336TCONS_00070370-exon-scaffold_55-1575043694:281283..281336Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1491911889:281792..281898TCONS_00070370-exon-scaffold_55-1491911889:281792..281898Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1510915933:281792..281898TCONS_00070370-exon-scaffold_55-1510915933:281792..281898Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1575043694:281792..281898TCONS_00070370-exon-scaffold_55-1575043694:281792..281898Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1491911889:282316..282390TCONS_00070370-exon-scaffold_55-1491911889:282316..282390Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1510915933:282316..282390TCONS_00070370-exon-scaffold_55-1510915933:282316..282390Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1575043694:282316..282390TCONS_00070370-exon-scaffold_55-1575043694:282316..282390Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1491911889:282861..282966TCONS_00070370-exon-scaffold_55-1491911889:282861..282966Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1510915933:282861..282966TCONS_00070370-exon-scaffold_55-1510915933:282861..282966Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1575043694:282861..282966TCONS_00070370-exon-scaffold_55-1575043694:282861..282966Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1491911889:285464..285526TCONS_00070370-exon-scaffold_55-1491911889:285464..285526Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1510915933:285464..285526TCONS_00070370-exon-scaffold_55-1510915933:285464..285526Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1575043694:285464..285526TCONS_00070370-exon-scaffold_55-1575043694:285464..285526Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1491911889:287676..288096TCONS_00070370-exon-scaffold_55-1491911889:287676..288096Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1510915933:287676..288096TCONS_00070370-exon-scaffold_55-1510915933:287676..288096Clytia hemisphaericaexon
TCONS_00070370-exon-scaffold_55-1575043694:287676..288096TCONS_00070370-exon-scaffold_55-1575043694:287676..288096Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:274346..288096 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.449928	0.175716	1.12479	0.612759	0.000256128	0.000215791	0	0	0	0.0071806	0.00508088	0	0	0	0	2.50734e-10	0	0	0	0	0	1.29649e-07	0.00263958	0	0	0	0.000221282	0.00043242	0	0
Blast
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BLAST of TCONS_00070370 vs. Swiss-Prot (Human)
Match: VP13C (Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 9.004e-38
Identity = 93/284 (32.75%), Postives = 153/284 (53.87%), Query Frame = 2 
Query:   32 AADDTLAEKLQAQILKNLQVRIKNIHVRYEDKTTIPGQPFSVGAMLYSVTSETTTANWIPTIIDGSVRKFYKMVNLDSLSLYWNSNTQFS-MTSNENWKALMKSQV-TNQSSKTHIDYILEPLSLAVHMEVDQDARVSMEYPKFLMQVILKELTLSLSKEQFNGIMKLLDSFMLMEVNQIYRKYKPLKTVKEDPKAWWQYILKSYTETSYKQ----WTWEYMKSHREXXXXXXXXXXXXXXXGFQKNPDPNHLAVIKKLIKEQEENLDVINILIARNQATNEIL 865
            A  DT  EKL  Q++KN+QV+I +IH++YED  T P +P S G  L  ++  T   +W P I++ + +  YK++ LDSLS YWN N   S   S E     +K+++ T+ +   +  YI +P+S +  + ++  A   ++ PK    + ++ + + L+K Q+  ++ LL+S   M  N  YRKYKP   +  + + WW+Y + S  E   ++    W+W  +K HR+L K Y   Y         K         I+K I++ E+ LDV NI++AR QA  E++
Sbjct:  177 AKKDTFVEKLATQVIKNVQVKITDIHIKYEDDVTDPKRPLSFGVTLGELSLLTANEHWTPCILNEADKIIYKLIRLDSLSAYWNVNCSMSYQRSREQILDQLKNEILTSGNIPPNYQYIFQPISASAKLYMNPYAESELKTPKLDCNIEIQNIAIELTKPQYLSMIDLLESVDYMVRNAPYRKYKPYLPLHTNGRRWWKYAIDSVLEVHIRRYTQMWSWSNIKKHRQLLKSYKIAYK-------NKLTQSKVSEEIQKEIQDLEKTLDVFNIILARQQAQVEVI 453
The following BLAST results are available for this feature:
BLAST of TCONS_00070370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VP13C9.004e-3832.75Vacuolar protein sorting-associated protein 13C OS... [more]
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