TCONS_00070367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070367
Unique NameTCONS_00070367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070367 ID=TCONS_00070367|Name=TCONS_00070367|organism=Clytia hemisphaerica|type=transcript|length=1323bp
TATGTTTCTTTATTACAAAGAAAGCTAATTGAGAttgatttaaaattaat
aaTGAGAAAATATGGTGCTCAGAAGCCTTGTTACATCTCTGCTAAACAAA
TACCTTGGAAAATATGTAAAAGATATTGATAGTGAAAATCTCACTATTGG
ATTATGGAGCGGAAAAGTTTCACTTTCAGAGTTGGAACTCCGAGAAGAGG
CACTTgttgAATTAGATCTTCCTATAGATGTCAATGGAGGGTATATTGGG
CAACTTTCAGTTAGTATTCCATGGACCTCAATTTATGTGAATCCAGTTGA
AATCGAAATTGATGAAGTTTTCATTCTTACCGGACCATCAGTAGAGAAGC
CTTATAATGAAGAGAAggagaaaagaaaaagtaatgctgccaaacaaaat
caaatcaaagctTTGGAGAAAAGCAAATCAATCAGTGAAAAAACAGAAAG
TCCTGAAAATGGGACTGCTGCTGATGACACGTTAGCAGAAAAGTTGCAGG
CTCAAATCTTGAAGAACTTACAGGTTCGAATAAAGAATATCCATGTTCGA
TATGAAGATAAGACGACGATACCTGGCCAACCATTTTCAGTTGGTGCAAT
GTTGTACAGTGTCACTTCAGAGactACCACAGCCAATTGGATACCAACAA
TTATCGATGGTTCTGTCAGAAAGTTTTATAAAATGGTAAACCTGGATTCC
CTATCACTGTACTGGAATTCCAACACTCAATTTTCGATGACTTCGAATGA
AAACTGGAAGGCGCTGATGAAAAGTCAAGTGACAAATCAATCTTCAAAAA
CTCACATTGATTACATCCTTGAACCGTTGTCATTGGCAGTACACATGGAA
GTTGACCAAGATGCTCGAGTATCCATGGAATACCCAAAATTTCTGATGCA
AGTTATTTTGAAGGAATTGACTTTGAGCCTTTCTAAAGAGCAGTTCAATG
GCATCATGAAGCTACTGGATTCATTTATGTTGATGGAAGTCAATCAAATT
TATCGAAAGTACAAACCATTAAAAACTGTCAAGGAAGACCCCAAAGCTTG
GTGGCAGTATATTTTGAAGAGTTACACAGAGACTTCTTATAAACAATGGA
CTTGGGAATACATGAAGTCACACAGAGAGCTTTACAAAAAGTATGTTAAG
CTTTACTACCAGAAATTGTGCTTGGGATTCCAAAAAAACCCAGACCCAAA
TCATCTTGCTGTTATCAAGAAACTTATCAAGGAGCAAGAGGAGAATTTAG
ATGTGATCAATATTCTTATTGCAAGAAATCAAGCCACGAATGAGTAGTGG
TCATTGTGTCAACTGTGTACGGG
Run BLAST on NCBI

transcript from alignment at scaffold_55:271636..286465+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070367 ID=TCONS_00070367|Name=TCONS_00070367|organism=Clytia hemisphaerica|type=transcript|length=14830bp|location=Sequence derived from alignment at scaffold_55:271636..286465+ (Clytia hemisphaerica)
TATGTTTCTTTATTACAAAGAAAGCTAATTGAGAttgatttaaaattaat
aaTGAGAAAATATGGTGCTCAGAAGCCTTGTTACATCTCTGCTAAACAAA
TACCTTGGAAAATATGTAAAAGATATTGATAGTGAAAATCTCACTATTGG
ATTATGGAGCGGtaaggaaaatttcattttctcttcACTATTTTCTCACT
GTATCTTAGTAATCTCTAAGGAATAACAGACATTTTCAGAAGTTTTCGGC
AAATATCGGTCCTTATGAAACCTTGAAACCTTTTTTTCCTACTGATcatt
caaaggaagaaatttttgcatgAATTCAGGATTTCAGATTTAACCTCAAA
CTGTGTATGTTCTAAATGCTAAAGAATAATAAAGCAATTTGAATTGTAAT
TTATTTTAGGAAAAGTTTCACTTTCAGAGTTGGAACTCCGAGAAGAGGCA
CTTGTAAGATCTTATCTTTTGCTGTTTTAGTTAATCCTTTCAAAAGTAAA
AGtcaaacaaatattttctttacccaaaagatttatttgaaaattgtcaA
TAATGTTAGGCCAACCAATAATGATATTCGAAACTGCTtactgttttttc
tttttcaggttgAATTAGATCTTCCTATAGATGTCAATGGAGGGTATATT
GGTATGACAACACTAACTTTGTGTCAGACTCTTATACATCAAtctttgaa
agaaagaaaatataataGAATTTGATGCATGGCtcaactttcagaaaaaa
gaattAATATTTGAACTCGTTTTAAAGTTCACCCTGTTTATTAAAACATA
GATCAAAATTCTTTCCGTCTGTAAGGTACAAAAAGAGGCTTTTCTCTCTc
acaaaatttgtcaaaatacaGTAAAATCTGAATAATCTAGGCCAATCCTT
TCAAGTTTCGTCTGACACAAAAAGCTTTGCTCCAATCCCTCACTGTTATG
TTAAAAAGATGATGaattagctctagtttagacggcccgctttttgccct
gcctattctaattgcgaattaaagagggcataaagtgggctgtctaaagt
gatgcatagccctcttttgacgtcaatgcaatgtcttctttcaaaccttt
ccaagcaaaggttttaacaaccaactttgtgccctctttctgcctactct
aacaattagaataggcagggcagaaagtcggccgtctaaactagagctta
caTTACAATTGATCTAATTGCtaaattgttatttttagaatttttaagtA
AACCCTTACAATTCTCATTTCTAAACGTACTCATTGTTTTCTATACAATA
ACCGATATTTTATTATTCATACAGGGCAACTTTCAGTTAGTATTCCATGG
ACCTCAATTTATGTGAATCCAGTTGAAATCGAAATTGATGAAGTTTTCAT
TCTTACCGGACCATCAGTAGGTAGGGTATACTCATATCccattttattgg
aaattttcatGTCTAAAAATTAATATGCCACACTCTGGCACTATTTTGCT
CAGAATTCCCAAAAAGAATTATCAAAGCCTCacgatataaaaaaaatttt
aatgcaAAAGTGTACCAAACTTTAAAAGTCGGTCATAAAACCCagccaaa
atcttgaaaaatcacaaaatctttttaaaatagtCATTTTTTAAACCATA
TAACTTCAAAGTTCCACAGGTTTTGGATAATGctaatatatttcaaaatt
taattgtCAAAATGATGACGTTATCAATTATGACAGCATCAAACCCTAAT
TAAATTACTCATATTCAGCTTTTATTTGAATTGATGCTACAATAAAAACA
CACCAATCCATGAAGATTTTTCCTACCCAAGGAATAACGAAGCACACTTC
TTGTTTACTAAAAGCTAGAGTGCTATTTCTGATATAGGAAACTGTGTTTA
TCCATTTATCCATTTAATAATAGATTTTACTTAGTCATGCAATAAATACC
ATTATGTTTCATAGAGAAGCCTTATAATGAAGAGAAggagaaaagaaaaa
gtaatgctgccaaacaaaatcaaatcaaagctTTGGAGAAAAGCAAATCA
ATCAGTGAAAAAACAGAAAGTCCTGAAAGTGAgttataatgttttttttt
gtgtcgGTTTCAGTCTTTATGTATTCTTTTCTTCATTAATATCCCATCCC
CTTTGGTTATGGCAGGGTGTGtttaaaatcaccaaaattgtTCTAAAATT
AAACTGGAAGAAATGAACAAAACCCTGAAATTCTAAAACCCTACAATTGG
TTCTTATAACAAGAAAGTTTTGTTGACCTTTGCCTTTGACGATTCGAACA
TTTGCTTTTGAAGATATTgcaaagtgttttttttctggttttatcaTCAG
GACATATAATTTGCTtccataaaatatcaaaacaaacaacaagTTTGCGA
TCGTTATAATCAATACACGAGCAACAATTTTGATgcttttgtctttttga
agaaattgaaatGGAGAGTATGTCATGTATGTCACAATACTAGTATGTAA
ACGACGAATAAATGATTGGTATTGCATTGGCCATTTAAACGAATGAAGGA
GTCCTGGATTAGTGTCTTGAAAGTTTCGATTCGACCCTTTGTCTTGATAA
TTCGAACATCTCTTTTTGTAGATATTCACGAGTGTTTCTATGAGGTTTCC
TAAATATAATGTAAAGTTTATtaccataaaatatcaaaacaaatagCAAG
TTAGCAANAGTGAAAAAACAGAAAGTCCTGAAAGTGAgttataatgtttt
tttttgtgtcgGTTTCAGTCTTTATGTATTCTTTTCTTCATTAATATCCC
ATCCCCTTTGGTTATGGCAGGTTGTGtttaaaatcaccaaaattgttcaa
aaattaAACTGGAAGAAATGAACAAAACCCTGAAATTCTAAAACCCTACA
ATTGGTTCTTATAACAAGAAAGTTTTGTTGACCTTTGCCTTTGACGATTC
GAACATTTGCTTTTGAAGATATtgcaaagtgtttttttttctggttttat
caTCAGGACATATAATTTGCTtccataaaatatcaaaacaaacaacaagT
TTGCGATCGTTATAATCAATACACGAGCAACAATTTTGATgcttttgtct
ttttgaagaaattgaaatGGAGAGTATGTCATGTATGTCACAATACTAGT
ATGTAAACGACGAATAAATGATTGGTATTGCATTGGCCATTTAAACGAAT
GAAGGAGTCCTGGATTAGTGTCTTGATAGTTTCGATTCGACCCTTTGTCT
TGATAATTCGAACATCTCTTTTTGTAGATATTCACGAGTGTTTCTATGAG
GTTTCCTAAATATAATGTAAAGTTTATtaccataaaatatcaaaacaaat
agCAAGTTAGCAATCGTAATAATCAATACACGAGCAACAATTTTAATGTT
TTcgtctttttgaagaaaatgaagtgGAAAATAGGTCATGTATGTCACAA
TACTTGTAAATGACGAATAAACGATTGGCATTGCTTCATTGAAAGGTCCA
GGAAGATTACGACCACGATAAGCTTGAATGGATGATATGAGGTGCAGGAT
AATGTTCAAAACTATTTGCACAGTCATATGCGATGTTGTGTTGCAGTGGT
AGATCTTGGTATATGTGGAGTGGTTTATTTTAACATCCAATTTTGTTGGC
GTTCGATTTAAACTTAAAAACAATGCCAATAAATCAAGCAATATCAAAAT
CATCACAATGAAGATTTGGGACATGAAAGTCTGTCGTTTCTGTTTTTCTG
TCAATCTTAGCTTCGaattaaaagcagtcaatagaTTTTGACATTTGATG
AAAATCAATGTCTGAGGAGAAAATGCCAGTATTGAGGTGACTATCAGGTC
CATCAAGCAAGTCATTTTTGTTGATTCGTTAGAAATCGAAAATGGTACAG
GGATAGTGGAAAACAAAAGTAACATTAACACAAAATGTAACATTATAATT
GGAAAATTGGATCCACGGACTATAACCGTGTCCCTTTTTCTAATGAATAT
GACGATAGTTGTGATGATAAATACAACACCAAGTGTACACAATACAGTAG
AAATCATCAACCCTTTCTGGTTTTTGAGCTTCAAATGTATTGTCGAGTAT
GGATCATAACAAGAGTCTCGTTTCGGGGAAGATAATTTATATTTTGGACA
AGGAGAGCAAGTACTGTATAATTGTTTATCGTTGGGTTGGAAATGATCGC
CAGAACATTGTTGGCAACTCCAGCCATACGATGAGCTACTCCATATTCCA
CGGCTTTGTGCAGGTAGTatgtcaaaaacattttcactaCCTATTCTGCA
TTCTGGAACAGGACATTCTTGTGTATGGTATCTAACAACACTATACCCAA
TAACTGGAACAAATGCTCTCTTGCTTGTCTCTCGGACTTCGATTTTGCCA
TGAACATAATACATAAATCTCAACTGACTTTTATTCGAATTACTTCTCTT
TATCAACGCACCTTTAAACCTGTCAAAAGTCATGTATCTAAATATGTTCA
TTGTTCTATAGATTTGTATCAGTTGAGCCATTTTTAAAAGATGTGTGTCC
ATTGATTGGATACAATTAAAGACTGTCAACTTTTCCTGTACCCTCGATGT
TATCgataatttcttttcaatatgaGTTAAACCAGCCTcataaaaaatca
ctttttcagAACTCATTGTGCTGAATGTAAAGAGATCAATGGTGTGCCAG
TGTTCAGTGGAGGTTGAATCTTGATGCATATCTAACAAGAAGACATTTAA
TTTGAGATCCAAAAACATGAAGTGAATACTATATCTAGTCATGAAtatat
ttgattggtttatATCGCCCAGAACCATAATGATCTGCCATTGGTTGATC
TGTTCTATTACTTTGAAAAGTGCTTTCGTATCGTTTTGACTATTCGACAA
TGTTATGGTGTAAAACTTAGGACAAAGTCCCAACTCTGGAGTATATTCTT
GAATCACTTTGTAAAAATGTTCATAGTCCAATTTGGTGAAAGTTAAATTG
CTCTCAAGGTAAACAATAATGAAATTTTTgtgttgatttatattcatgtT
CCAATAGCCTGCAAAACTTTGCAGATTAAGGTTTCTGTTAGCCTGATTGT
TGAAATAATATAGGAAGTTTCTTGCATTCACATCAAACATATTAGCGTCA
CTGTGCAGGTTTTTTCGTTGTAACGACACCGGAATTATATCTTCTATATT
AACAAATCTGACTACAAAGTCTTCAccgaaaaatatttcttgtaacAGTT
TGGAGATTGTTTTTGGTGCATGTATAATAACAAGAATAATTCTTGAAGTA
TATTGCCAAGACTTAATGTTCCTTTTGTTCCATTTGGGAATTTGATGTTG
TTCGTTCTTGGTGACCATATAGCTTTCGTTAACTTTCAAGTTCAACGCTA
TTTCCAATGCTTGTGTTGTGCTACAAAAGTTGATCACTTGATATTCAATA
TCATTATCATTCATTGTTAATAAGTTGCCAACCTTATTAAAATCCTTATT
TCTTAAGAATTGGAACCACTTTGACTTCTTATGTTGGTACGCGTAATCAA
TAgcatttttacaaatatttgaTTGAGTGACATTTTCATCTCCTGAACAC
TGATGGTAAAGTCCCACAATGAGCATAGGATTACCACCTGGTCTTAGAGT
TGTAGATAATGATACTTTAGAAAACAAGATCTTCAAAATATTGAGAATGA
GAAGTTGTTTCATCATTCAATCGCTTTGTCTCTTATACTACCACGTCTAG
CGATATGTACCTTTGagatttttatatttcataGCTACCAAGAAATTTTG
GTGTTCTCAAAGTATTTTCTTCTTACTCTTTGGCTGAGCTTAAAAGTCAT
CCATGCAGGTGTATTTTTAAGAGagaagagagagagaaaaagagaaaggT
TCAAACCCTCATTAtaatattcaagaaaaacctttaaaatgaaAGTTTTA
ATATCTTGAGACTATTAGTTTTGACTCATGATAattaaaaatgtcaatat
gtgtctattaaaaaaactctttaactcgaacctctacaactcgaatgctt
ccttaactcgaataagtTAAACCTTACTCAATACATAACTGAAAATATCC
TCatcttgaacaaatttgtgttctctTTATTAAGGCTCAAACGTAAAAGA
AGTTCTGATTTAATTTAATATATCCTTTCCATTTCATTTTAGATGGGACT
GCTGCTGATGACACGTTAGCAGAAAAGTTGCAGGCTCAAATCTTGAAGAA
CTTACAGGTACCATAGTCATAATATTTAAGTATTTAGTTTCAATTGAAGG
CCTCCTTTTATAGCTTCTATGGAATTCGCTTctatatttaatttttcaat
gtcCCCTCCcgctttttaataagaatatactCCCAAAATGGAATAACTAT
TTTTTTTTGGTCGAGACTGATAACATATAGGGAAGAAACAACCAGATGAA
CCATTTTAAGAATGATTGTATTGTAATTTTTCTTAGGTTCGAATAAAGAA
TATCCATGTTCGATATGAAGATAAGGTACATGCTTGATAATTACTGTTAA
GGTTATAATTTATACTGATCTATATTATATTTCTGCCACTCTGCTCACTG
GCATTTCTTTAATTCGTGCACTTTTCAGATACAATTTtgacaatttcaaa
atttaattttcctcAACAACATTAATggaattgaatttttatttagACGA
CGATACCTGGCCAACCATTTTCAGTTGGTGCAATGTTGTACAGTGTCACT
TCAGAGGTATTTTATTCTTGAAACtggcaaaattaaaaagctgaCTGGga
aaaaccattgagtttaaagcccgaagggtactaatgtaacattccaaagg
tagttgaaactgtaaaggtgaaaaaaaaagaatatttacctttcaatggg
tACCTTTCataatcagtccaaaagttgatgcatgcacctcaaaaaccaaa
gagattcgttggttttcagggccatctttgttgttttgaaaatgaaacgc
agaaaaaaagactgggcccagacatctggaagaagcgggaaaaaagcaaa
ggagataaagttttggtactattactattatttgtacaaaagttgcaatt
ttcataaaactaTTCTACATTATAATACTCAACACATAGATTatattcta
ttaaaataagaaatttatgaaacaaatacttcaaatagtgctaaactaat
tttaaccccatccaacacgaagcaaagtcgatatttcgccatcccaccgg
ctcattttcagaaattttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNatatacagatttttttacgccacgcgcagatctagagaaaggatg
ctacactccctattcgggcgcttcgcgccctcaaaacggtcgttccgcaa
aaagCTGACTGGgaaaaaccattgagtttaaagcccgaagggctagagtt
caatctctaacctttcttttctcaggcaagaaaaagtgaagtgatatttt
tttcagatttagcggtaaattttagtttcaatctgtcatttgtgtaaaaa
ccaggcgagccgctcaaggccgcgcaactttggtaggatttgttggcttc
aaatcctaccaaggagattgacttctagcccttcgggcttatacttcatt
ggggaAAACTTGAACTCAAATTAAAGATAAAGTGATTACGAATCAAAGtt
tcgatttttttgttttagactACCACAGCCAATTGGATACCAACAATTAT
CGATGGTTCTGTCAGAAAGTTTTATAAAGTACCatcttattagttttttt
tatactTTCATTCTGAGTACACCTGCTGCTTGTGTAAGCCTATACTTGTG
ATAAAATACATAGTGCTGCTcgaaaatattatataaaggAGGGCCTGCTC
ACATTTCAAGTTGTaagcacagatatctgtaaagcccgaagggctagata
ggcaactttaactTTCTCCAGAAAAAAAAGTGACGCAAAACATTGTAAAT
GAAACAAGTAAAACAAGTTGTAAGTAGCCCCACCTCAATGCAACACATTC
TTACATTTTTTAGCAGCAGCTTTTGCTGACAATTAAAAAAAGCAATAatt
tttattcatgatatgcaccactgagAGTCttttgagaacttttaaaattt
tccactcaatacgtcactttaaacaatagaaaaagtgacgtattgggtga
aaatttttgaaaactcttggagactctccagtgttgcatatcatgaataa
tgtGTTTAATGTGATTTTGAGAGAAGAGTAAAGTTGAAGATCAAACATCC
TTTTCAGATGGTAAACCTGGATTCCCTATCACTGTACTGGAATTCCAACA
CTCAATTTTCGATGACTTCGAATGAAAACTGGAAGGTATTATAATTAAAT
TATCCGTCTGAGTGACCGTGTAGTGCGATGGTAGAACTTTCGGCTACGAT
GCGCAAGGTTTTGGGTTCACTAAAGACTTTATACTAAGTACAACAAATTG
CACTTGATGCTTCTCTGCTTGTAGATAGCTATTGAAAGAGGGACCTTTGG
ATATGCCGACTGCAGATGCGTTGCAAACTTACTTAAAACTATCCATCTGA
TATGGATGAAAATCATGATTGTTTTTACCATTCATCAAATTACGATTATT
CATCATTTACAATACTACAACTAAAAGTTTTAATATGCTTCCATCGCATG
TTGTTTCACTTTAGGCGCTGATGAAAAGTCAAGTGACAAATCAATCTTCA
AAAACTCACATTGATTACAGTAAGGATCTATCTGATATACTTAAGACAAA
TAGTAATACTTAATAAACAAGAAGCATGTCTGTTACTGTGCTATCGTGTA
TCGATTTCACAATACACCGTGGATGAGAGAAGAGTGCACTGATCTTGTTC
CCCAGTGGTTCGCGCTCGATTAATGCACTTGATATGAAAAGCTGCGTATC
AGTGTCTGGCAAGCTGGTTGGCAGTATAAAATACAACGTAAGGTGGTTCT
AACGAGATGACTCCCTAGACCGCTCAATATAGCGGGCATCTTCTGTAAGG
GGAAGCCATACATCAATAGTAAACGTCGTGTTCAACTCAACGACTGAAAT
GTTGAGATAAAGGAGGGTTATACTTATCAGATTTTCTAAACTTAGAAAGG
ATGACTTTCATTTCTCTAATAATACTTACGATATCGTATTTTGACGAACA
CAATATTGAAGTTTGATATCTCGAGTCTTTATACAATCTCTATTCGGCAA
TTTTGGACTCGTTTTgtgttttttattcatttttcctAAATGTTTCATAG
TCCTTGAACCGTTGTCATTGGCAGTACACATGGAAGTTGACCAAGATGCT
CGAGTATCCATGGAATACCCAAAAGTATGTTTATCACATCAATAACTTTA
TAGTTATGGACTTAATTTTTTAATCTGTGATTTTTATATAACTCGTACTT
GCATTAATGGATTGTCTTTTATTAGGCTTAAATGATGATGGTTagttctt
aaaatgtttcaaaattcaataaatgtaaCATCTTCTTTCTCTTTTAGTTT
CTGATGCAAGTTATTTTGAAGGAATTGACTTTGAGCCTTTCTAAAGAGCA
GGTATAAAGTCTATGTTTTTGAACATCTTTAGCTTTTcgattactcttag
gttccaaataaacgcccctccccccgcttgttaatttttcgaaaattttc
caaccccctggaccttattattttcagctgtcccttatttttctttaaat
agcctgatatttaccttattttttggttttcagaagtacaattttcccgg
caattaggccccccgtttattcgaacccccccccccgtttatttggaacc
taagagtaaagaACAGACTTAGGAATCTTTGCTATTACATAAACTCTGAG
GGTTGCTGATAGATTTTGGCCTTGAATGGAACTTTGTGCTTGTCATAAAA
ACAAAGTTCTTGTGTCAACTGAAAAGTTGTTTAAATTCGACTTACGATTT
TAAATCCTTTGATTTTTCACACGTATAATTTAGCATTTAACTGTATTATT
TAATAGTTCAATGGCATCATGAAGCTACTGGATTCATTTATGTTGATGGA
AGTCAATCAAATTTATCGAAAGTACAAACCATTAAAAACTGTCAAGGAAG
ACCCCAAAGCTTGGTAAATAAATGATGTGCTTTTCAGCCATTAGAAATAa
ttcttaaaagtttcgaaaaaaaagattCAGATTCATGTATAATATGATGC
AGTTGGCTTCCTCCAATTcgatctttcaaatttttctttaattataGAAG
GATTGGAATTACAGGGAGTAATTTATACGACTTTTGAGCTGGATTGGCCA
ATActtaagttcgaattacagaaaattcGAATAGAGGCTCGAATTATAAA
GAGTTGGCTGTATATTTTTTGTCAGTTGTCTTTGCTGACAAGGAAtgcat
tattttttttgtttttgaatcgaAGACGTCATGACAACGTCAATCTCTTT
ACAAATAAAGGTCTACCTGAGAATTAGTTTTTCTGAAACATAAAGCTATA
CTCTACTTTTATCATCTGTTTGCATTTTAGGTGGCAGTATATTTTGAAGA
GTTACACAGAGACTTCTTATAAACAATGGACTTGGGAATACATGAAGTCA
CACAGGTGGATACacattattgatttttttttgtttgatttttaatattt
ttagatattaaATAGTTTTGCTTGTGATCGATGTTGCTGAGTGCTCGGTG
AAACCAGAGCcaagtaaaaaattaaaatgtatcTTTCATCACAACAGAAA
GTAAAAGAGTATACTATTTAGAGTTTCGTGCTACTCTACTGCACTCTTGT
CAAATgtacaaataaaattttatgtgtACATTTGTATTGACAAGAGTGCA
GTAAACTCTGAATAGTGTACTTTCTGTTGTgatggaaaatatattttaat
attCTATATATTCAATATTAATGTACTTTTTTTGGAGTAATATCTAAGTG
GTTAATGTTTTCCATCAGCTTCGACCTTCACTTCTCTATATTTCATGCAA
ACGGATTCAATGATTCGATGCAAACGAATAAAGTAAAGCAAAGTCTGTAA
CGATTTCATCTATATTCTATCTCAGAGAGCTTTACAAAAAGTATGTTAAG
CTTTACTACCAGAAATTGTGCTTGGGATTCCAAAAAAACCCAGACCCAAA
TCATCTTGCTGTTATCAAGAAACTTATCAAGGTAAGAAGTGAtgaatttg
ttcttaggtttttggacctacctaaggtagtcctttaaattaacccttgt
ccgttcgttcgttcgtccgtccgttcgtccgtccgttcgttcgtccgttc
gttcgttcgtctgttgccagcttttctcgggatcggctcattagtttttt
ctaattttttgcacaatgatgCAAAATGGCAATGCCCAAAATGTGACGGA
GCCTGATTTTCGAgaaaaaaaaatttttccggccgaaaatggcgaaaata
tgccggaaaaactggtttttcggcattttctgagatttcatcattagttt
tttctgattttttgctcaaagatgcgtattaacaatgcccaaaacatggc
ttagtccgatttttgagaaaaaattttttccggccgaaaatgccggaaat
atgccggaaatcgccgtttttctggattttcattggacttttccatgtaa
ttggttgtttttttcattcaaaaacattattaatagcaatgcccaccatc
aagcatgtttcaatattcaattaaattgatttttgaagccggaactttct
aaaaatcgccggaacagccgattttcgccggaaaaatggtatttcttgaa
tttcttgagctgtactatatatttttttcatgaaattttacacactgatg
caaaatatcaatacctaaattgtgacggagcccgattttcaaaaaaattc
atttccggccgaaaatgccggaaatatgccgggaAAACTGGTTCTTTGGC
ATTTTcccgagattttatcattagttttttctgattttttgctcgaagat
gcgtattaacaatgcccaaaacatgaccgagtcagatttttgagaaaaaa
attttttctggcggaaaatgcctgaaatatgccggaaattgctgcttttc
tagattttaattggacttttccatataattggttgttttttcattctaaa
acattatcaaaagcaatgcccaccatcaagcatgtttcaattttcaataa
aattgatttttgaagccggaactattttaaaagtctccggaacaacctat
tttcgccggaaagacagtatttcttgaatttctcgagctgtactttatat
atttttatgaaattttgcacactgatgcaatatNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttgaaa
aacatttttttccggccgaaaatgccggaaatatgccggaaaaaccggtt
ttttgactttttctcgaattttcatttttagttttttctgattttttcca
gaaagatgcgtattcgcaatgctcaaaaatgaccgagttcgatttttgag
aaaattttttttccggtattgccggaaatcgccgtttttgcagattttca
ttggattttttccttgtatttctatgtttttcacacaaaaatattattga
taacaatgcttcaccatcaagcatgattcaattgtcaataaaactgattt
ttgcgaccagaacttcctatttattttttccctacaacccttctctCTCC
CCCCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaaatgctatattttctgact
gattttttttcatttttcttttcgcattgctaactaactttcatcatcag
gtaggtccattcagcatgttgcttgtttattttgataaaatttctatatG
TCATCCATTgataaaatttatatcaatcaatcaatatttaTGTCATCCAG
TCTCTAAACTATTAACTAAACTATTATTTTTCTATGGATTATTATAATAT
ACATTACACatgagggggtttatctaaagaatcccaaatttactaaaaat
agacaaaaaagaacgacaactttcataaaaactgaaaactttcataaaaa
ccgacAAATTCACCGTCAACAACCCCGACCTGGTTAGTTTGTCCACCCCT
GCAAAAACAtccctctttgtttatcacggaaATTAACTACATTTGGTGCA
GGATGCTTTAGAGGACAGACTGACATAATAGACATACTTTATCTTTAAAC
ACCTTTAAAATAAGTGACCACGTACGGTACGGGTACTTTTTCGATATCCG
TTTGTATTTAGGATGGCTGGAAATGATGATTTTATAACAGTTAAGAAAAC
TTTTATCGCCCTTCCAAGAGTCTAGATATCAAATAATCTCAAAGTAGTCT
ACAAGTATCAAATGTCTCTTCTTTTTAGGAGCAAGAGGAGAATTTAGATG
TGATCAATATTCTTATTGCAAGAAATCAAGCCACGAATGAGGTGAGATGC
TTACATAGCTTTATAAATACACATGCCGATTTTATTGGCCAACGCAAAGT
Cttcaattctcaacttcagttgagctagaatctgagaatgtctgtgtgtg
cGTGTGTTTTTATATGTCCCAAAATTTTGCGACTGtctgaagacttcaaa
aatggtcggattcggctgaaatttggcactcAAGGAGCaaccttgggtga
atatctgagttttattttcatttatcaaGAATCTCAATTTTTGGAGCCTC
TGGGGACGATTTTtccgccaaaacgaggctaaaacttagGAGCAgcttgg
agacttcaaaaatgttcGAATTTGGCTTCCTATGGGTCTGCTTTGTTAAA
ATATCTAGCAGTGATATTTttcgtttaaaatttttcaattttcggggcCT
GGGCACTAAAATCTTGTTGTTTGTTTTGCTACAATCGGGTCCATGAATAA
TCTGAAGTTATTGAAGTTGAGCCCAATGCGTTGTGCAAGTTTGACTATat
ttttcatcgaataaaggaACAATCtgtaaaaaattgcacattCTGTTGAG
ATTCTCATAATAATTTTCTACTCAATaataatgaagaagaagatttaATA
GtttcaagtttgtttttaaCGTTGAAAAGTTCTAatgaatttcacaaaaa
aacaaactacAATTCCAGTTAtgattcgaaaaaaaataaattaaaataag
aTTTAGGTCATCAATAAGCTAACTTTAATTTGCAGTTTTTTGTCAGGTAT
CAAATATACCAACTACTTCTAGTACAATAAATTATCATGACAAAAATTAG
CCTTCAAATACGGTATATAGTTGCCATTGTTTTGATCTATTAAATCGAGC
TGTTATGCATTACATTTCacaagttttgagaattttctgGTTTGTTGACA
GTAGTGGTCATTGTGTCAACTGTGTACGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043832XLOC_043832Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070367-exon-scaffold_55-1491911889:271636..271796TCONS_00070367-exon-scaffold_55-1491911889:271636..271796Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:271636..271796TCONS_00070367-exon-scaffold_55-1510915933:271636..271796Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:271636..271796TCONS_00070367-exon-scaffold_55-1575043694:271636..271796Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:272045..272088TCONS_00070367-exon-scaffold_55-1491911889:272045..272088Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:272045..272088TCONS_00070367-exon-scaffold_55-1510915933:272045..272088Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:272045..272088TCONS_00070367-exon-scaffold_55-1575043694:272045..272088Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:272244..272286TCONS_00070367-exon-scaffold_55-1491911889:272244..272286Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:272244..272286TCONS_00070367-exon-scaffold_55-1510915933:272244..272286Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:272244..272286TCONS_00070367-exon-scaffold_55-1575043694:272244..272286Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:272960..273055TCONS_00070367-exon-scaffold_55-1491911889:272960..273055Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:272960..273055TCONS_00070367-exon-scaffold_55-1510915933:272960..273055Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:272960..273055TCONS_00070367-exon-scaffold_55-1575043694:272960..273055Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:273600..273713TCONS_00070367-exon-scaffold_55-1491911889:273600..273713Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:273600..273713TCONS_00070367-exon-scaffold_55-1510915933:273600..273713Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:273600..273713TCONS_00070367-exon-scaffold_55-1575043694:273600..273713Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:277828..277892TCONS_00070367-exon-scaffold_55-1491911889:277828..277892Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:277828..277892TCONS_00070367-exon-scaffold_55-1510915933:277828..277892Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:277828..277892TCONS_00070367-exon-scaffold_55-1575043694:277828..277892Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:278122..278160TCONS_00070367-exon-scaffold_55-1491911889:278122..278160Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:278122..278160TCONS_00070367-exon-scaffold_55-1510915933:278122..278160Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:278122..278160TCONS_00070367-exon-scaffold_55-1575043694:278122..278160Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:278332..278391TCONS_00070367-exon-scaffold_55-1491911889:278332..278391Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:278332..278391TCONS_00070367-exon-scaffold_55-1510915933:278332..278391Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:278332..278391TCONS_00070367-exon-scaffold_55-1575043694:278332..278391Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:279454..279513TCONS_00070367-exon-scaffold_55-1491911889:279454..279513Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:279454..279513TCONS_00070367-exon-scaffold_55-1510915933:279454..279513Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:279454..279513TCONS_00070367-exon-scaffold_55-1575043694:279454..279513Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:280043..280120TCONS_00070367-exon-scaffold_55-1491911889:280043..280120Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:280043..280120TCONS_00070367-exon-scaffold_55-1510915933:280043..280120Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:280043..280120TCONS_00070367-exon-scaffold_55-1575043694:280043..280120Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:280450..280504TCONS_00070367-exon-scaffold_55-1491911889:280450..280504Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:280450..280504TCONS_00070367-exon-scaffold_55-1510915933:280450..280504Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:280450..280504TCONS_00070367-exon-scaffold_55-1575043694:280450..280504Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:281036..281109TCONS_00070367-exon-scaffold_55-1491911889:281036..281109Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:281036..281109TCONS_00070367-exon-scaffold_55-1510915933:281036..281109Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:281036..281109TCONS_00070367-exon-scaffold_55-1575043694:281036..281109Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:281283..281336TCONS_00070367-exon-scaffold_55-1491911889:281283..281336Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:281283..281336TCONS_00070367-exon-scaffold_55-1510915933:281283..281336Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:281283..281336TCONS_00070367-exon-scaffold_55-1575043694:281283..281336Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:281792..281898TCONS_00070367-exon-scaffold_55-1491911889:281792..281898Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:281792..281898TCONS_00070367-exon-scaffold_55-1510915933:281792..281898Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:281792..281898TCONS_00070367-exon-scaffold_55-1575043694:281792..281898Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:282316..282390TCONS_00070367-exon-scaffold_55-1491911889:282316..282390Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:282316..282390TCONS_00070367-exon-scaffold_55-1510915933:282316..282390Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:282316..282390TCONS_00070367-exon-scaffold_55-1575043694:282316..282390Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:282861..282966TCONS_00070367-exon-scaffold_55-1491911889:282861..282966Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:282861..282966TCONS_00070367-exon-scaffold_55-1510915933:282861..282966Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:282861..282966TCONS_00070367-exon-scaffold_55-1575043694:282861..282966Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:285464..285526TCONS_00070367-exon-scaffold_55-1491911889:285464..285526Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:285464..285526TCONS_00070367-exon-scaffold_55-1510915933:285464..285526Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:285464..285526TCONS_00070367-exon-scaffold_55-1575043694:285464..285526Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1491911889:286437..286465TCONS_00070367-exon-scaffold_55-1491911889:286437..286465Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1510915933:286437..286465TCONS_00070367-exon-scaffold_55-1510915933:286437..286465Clytia hemisphaericaexon
TCONS_00070367-exon-scaffold_55-1575043694:286437..286465TCONS_00070367-exon-scaffold_55-1575043694:286437..286465Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:271636..286465 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.01011	2.52215	3.52056	2.67124	2.39485	2.39266	3.80334	5.26458	1.53689	1.08869	2.39591	2.98554	1.42609	0.802012	2.46602	2.74123	2.14595	4.07107	0.423507	1.34427	2.98044	2.90821	1.11969	2.53126	9.71078	9.36737	1.86248	1.02123	0.809127	2.16083
Blast
[Close]
BLAST of TCONS_00070367 vs. Swiss-Prot (Human)
Match: VP13A (Vacuolar protein sorting-associated protein 13A OS=Homo sapiens GN=VPS13A PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 3.031e-56
Identity = 142/417 (34.05%), Postives = 235/417 (56.35%), Query Frame = 2 
Query:   62 MVLRSLVTSLLNKYLGKYVKDIDSENLTIGLWSGKVSXXXXXXXXXXXXXXXXPIDVNGGYIGQLSVSIPWTSIYVNPVEIEIDEVFILTGPSVEKPYNEEKEKRKSNAAKQNQIKALXXXXXXXXXXXXXXNGTAADDTLAEKLQAQILKNLQVRIKNIHVRYEDKTTIPGQPFSVGAMLYSVTSETTTANWIPTIIDGSVRKFYKMVNLDSLSLYWNSNTQ-FSMTSNENWKALMKSQVTNQS-SKTHIDYILEPLSLAVHMEVDQDARVSMEYPKFLMQVILKELTLSLSKEQFNGIMKLLDSFMLMEVNQIYRKYKPLKTVKEDPKAWWQYILKSYTETSYK----QWTWEYMKSHREXXXXXXXXXXXXXXXGFQKNPDPNHLAVIKKLIKEQEENLDVINILIARNQATNE 1294
            MV  S+V  +LN++LG YV D+D+  L++G+W G V+L  L+++E AL +LD+P  V  G+IG L + IPW ++Y  PVE  ++E+++L  PS    Y+  KE+++   AKQ ++K +E++K      E         DT AEKL  QI+KNLQV+I +IH+RYED  T   +P S G  L +++ +TT   W+P + D + +   K++ LD+L  YWN  +Q F ++  +N    +K+ + N++      D++  P+S    + +++ +      PK  +++ L  + +  +K Q+  IM+LL+S  +M  N  YRK+KP   +    + WW Y +    E +       W+W++++ HR+  K+Y +LY +KL     K P    L  +++L K     LDV NI IAR  A  E
Sbjct:    1 MVFESVVVDVLNRFLGDYVVDLDTSQLSLGIWKGAVALKNLQIKENALSQLDVPFKVKVGHIGNLKLIIPWKNLYTQPVEAVLEEIYLLIVPSSRIKYDPLKEEKQLMEAKQQELKRIEEAKQKVVDQEQHL--PEKQDTFAEKLVTQIIKNLQVKISSIHIRYEDDITNRDKPLSFGISLQNLSMQTTDQYWVPCLHDETEKLVRKLIRLDNLFAYWNVKSQMFYLSDYDNSLDDLKNGIVNENIVPEGYDFVFRPISANAKLVMNRRSDFDFSAPKINLEIELHNIAIEFNKPQYFSIMELLESVDMMAQNLPYRKFKPDVPLHHHAREWWAYAIHGVLEVNVCPRLWMWSWKHIRKHRQKVKQYKELYKKKLT---SKKPPGELLVSLEELEK----TLDVFNITIARQTAEVE 408
The following BLAST results are available for this feature:
BLAST of TCONS_00070367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VP13A3.031e-5634.05Vacuolar protein sorting-associated protein 13A OS... [more]
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