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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070365 ID=TCONS_00070365|Name=TCONS_00070365|organism=Clytia hemisphaerica|type=transcript|length=3785bpRun BLAST on NCBI protein sequence of TCONS_00070365-protein >TCONS_00070365-protein ID=TCONS_00070365-protein|Name=TCONS_00070365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=804bp MMNPEVESHIKNNFLWTNLPANVKQTLGNNKANWDKSVSDYCIKNQFRYKRun BLAST on NCBI transcript from alignment at scaffold_55:211664..247215+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070365 ID=TCONS_00070365|Name=TCONS_00070365|organism=Clytia hemisphaerica|type=transcript|length=35552bp|location=Sequence derived from alignment at scaffold_55:211664..247215+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_55:211664..247215+ >TCONS_00070365 ID=TCONS_00070365|Name=TCONS_00070365|organism=Clytia hemisphaerica|type=CDS|length=57960bp|location=Sequence derived from alignment at scaffold_55:211664..247215+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070365 vs. Swiss-Prot (Human)
Match: F91A1 (Protein FAM91A1 OS=Homo sapiens GN=FAM91A1 PE=1 SV=3) HSP 1 Score: 834.328 bits (2154), Expect = 0.000e+0 Identity = 428/840 (50.95%), Postives = 563/840 (67.02%), Query Frame = 2
Query: 305 MNPEVESHIKNNFLWTNLPANVKQTLGNNKANWDKSVSDYCIKNQFRYKQSLVKQVRKDEKKYYQELVQYSRQNLMLYPYHLSDIVVKGLRLTPFGYYIHMMNDIMTSEKSYDSLPNFTAADCLRLLGIGRNQYIDMMNQCKSSKRFFRAKRPPKELLPVKPIPQTVIKPWWIINSGYITDDDIKTCTAQEVKIVDTLIDDGAKTVHEINTDITQSLYNKGFVYFDVPIKDTDYLVVPPLENFVMNRVLGDYMETMLYKVFVSIDEETTVAELAQVLEIDLRLVKTAVSLFCRLGITQKKNDEQDGGGGGRQASNLTLDVSSTTRNFGSAPN----------LLDLDDFGSDKENGSISPKSNSNNDFLIEPAESTDMTA-------KKRIAFLFDSTLTAFLMMGNLSQGLKRHAVTMFEVGKLSDETMENFVSELEKIEEVANEGEAQRYFDHAVVLKKTIQFIRNNTDLTI-----DSENQSPGLDLVRCESMNSLDPGVCARILTKKYSLLISMAPLSNEIRPISSCWPPHIGPAIPEVNSVWFKLFLYSKVKKGPPSLLLVKGTRLSRLPKIFKKYDRLLITTWGHDPAVVATSNVLFSLNDALTHSPVLVQAHGYFCEGETQTISFPFDDKYLTKD---SDLEYTETIQNINQQFDLSCSCGYVTLINTASSKHSKSRGSIDRLNSDPDIIDLSP-NDSFDNIQRXXXXXXXXXXXXVESVAVNGLNNADWIPLELCYGIPLFDDELNIEVTRKMVKSGICQQKSLDKMTNSNRMLSMELLNFITEWQEKVSIPDSSSGE-----------KEQPVTYPTKCIVFQNGTLAAWS 2713
MN +VE HI++N+ W LPANV+Q+LGN++ ++K V Y I+NQ RY+ +LVK V+KDE++YY+EL++YSR +LMLYPYHLSDI+VKGLR+TPF YY +M DIM SEKSYDSLPNFTAADCLRLLGIGRNQYID+MNQC+SSK+FFR ++ ++LLP+KP+ + I+ WW++ +GYIT+DDIK CT E VD +ID G + ++ ++ SLYNKGF+Y DVPI D + VPPLE FVMNRV GDY ET+LYK+FVSIDE T VAELA VLEIDL LVK AVS++CRLG KK Q NL + S+ +N S LL D S S ++++ + +PA++ +++ KRIAFLFDSTLTAFLMMGNLS LK HAVTMFEVGKLSDE++++F+ ELEK++ EGEAQRYFDHA+ L+ TI F+R+N DL D N LDL+RCES+ LDP C+R+L K Y+LL+SMAPL+NEIRP+SSC P HIGPAIPEV+SVWFKL++Y +GPPSLLL KGTRL +LP IF+ YDRLLIT+WGHDP VV TSNVL LNDALTHS VL+Q HG GET + FPFD+ L + ++ + +Q + + DL CGYVT++N +S + +PD+ S N S ++ + + ++ S A ADW+PLELC+GIPLF ELN +V RK+ G+C+++SL + +S+R LS+++LNF+ +QE SI D + + V P K ++F++G L+ WS
Sbjct: 1 MNIDVEFHIRHNYPWNKLPANVRQSLGNSQREYEKQVVLYSIRNQLRYRNNLVKHVKKDERRYYEELLKYSRDHLMLYPYHLSDIMVKGLRITPFSYYTGIMEDIMNSEKSYDSLPNFTAADCLRLLGIGRNQYIDLMNQCRSSKKFFR-RKTARDLLPIKPV-EIAIEAWWVVQAGYITEDDIKICTLPEKCAVDKIIDSGPQLSGSLDYNVVHSLYNKGFIYLDVPISDDSCIAVPPLEGFVMNRVQGDYFETLLYKIFVSIDEHTNVAELANVLEIDLSLVKNAVSMYCRLGFAHKKG----------QVINLD-QLHSSWKNVPSVNRLKSTLDPQKMLLSWDGGESRSPVQEASSATDTDTNSQEDPADTASVSSLSLSTGHTKRIAFLFDSTLTAFLMMGNLSPNLKSHAVTMFEVGKLSDESLDSFLIELEKVQSTG-EGEAQRYFDHALTLRNTILFLRHNKDLVAQTAQPDQPNYGFPLDLLRCESLLGLDPATCSRVLNKNYTLLVSMAPLTNEIRPVSSCTPQHIGPAIPEVSSVWFKLYIYHVTGQGPPSLLLSKGTRLRKLPDIFQSYDRLLITSWGHDPGVVPTSNVLTMLNDALTHSAVLIQGHGLHGIGETVHVPFPFDETELQGEFTRVNMGVHKALQILRNRVDLQHLCGYVTMLNASSQLADRKLSDASDERGEPDLASGSDVNGSTESFEMVIEEATIDSATKQTSGAT---TEADWVPLELCFGIPLFSSELNRKVCRKIAAHGLCRKESLQNLLHSSRKLSLQVLNFVHSFQEGASILDIHTEPSFSSLLSQSSCADMGVPLPAKNLIFKDGVLSEWS 823 The following BLAST results are available for this feature:
BLAST of TCONS_00070365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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