TCONS_00070362 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070362
Unique NameTCONS_00070362
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070362 ID=TCONS_00070362|Name=TCONS_00070362|organism=Clytia hemisphaerica|type=transcript|length=286bp
TTTTGCTTGCAAcctttttagagaaattttgcttaaaaagtaTACATTCT
AGAAGATGTACAATGAAGACAGTGATGATGGATCAGGAAGTGATTGTTCA
GATTTTTTGTCAGTACCTGTCAAGAAGAAACGAAACAAAACTAAAGAACT
CACCTGGGCTGAGGCTGCTGAAATTATTCTGAAGCGCTTTGATCATCCTC
TTCCACCCAAAGAAGTTCTAAGACTCATGCAAGAAGATGATTTGAAGACG
TAAGTCACAAATAAATATTGTGAATTTCAAGGAATA
Run BLAST on NCBI

transcript from alignment at scaffold_55:175105..176061+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070362 ID=TCONS_00070362|Name=TCONS_00070362|organism=Clytia hemisphaerica|type=transcript|length=957bp|location=Sequence derived from alignment at scaffold_55:175105..176061+ (Clytia hemisphaerica)
TTTTGCTTGCAAcctttttagagaaattttgcttaaaaagtaTACATTCT
AGAAGATGTACAATGAAGACAGTGATGATGGATCAGGAAGTGATTGTTCA
GATTTTTTGTCAGTACCTGTCAAGAAGAAACGAAACAAAACTAAAGAACT
CACCTGGGCTGAGGCTGCTGAAATTGTAAGTTTTTGTGTAAAATCTTTGA
TGTGAGACAAATTTATGCATAATCCAGGTCAAAGAATGACAGTAAATTTC
TATCAAGTTTATTTTGTGTTTAAAAGAGAAGCTGCTATTCTTcagtttct
tttattttagttCCTATTTCTTGAGCTAAGCCTACACATTTGAGATTTTA
CAGGCTGCAATGAAATGAACATAGCACTACAAGGGAGtgagaaattacaa
aactggCATGTCAATTTATACTGCAATCACTTTACAACGCAATAAAGATA
CTGCAACAAAGTTTTTTGCTTGCAATTTTTAACACTGAGCTTTTTGAGGT
CTATTTTGGAACATTTGACTACTAATATTGTTTTGGACATTCAAAAGCAT
TTTAATATTTGTGTGATTGCACACTAAAAGTGGctacaaaaaaaatatac
aaggCTGAATCAAAGCAACAAATATGTTGCAGCTGCCTGAAAAAACTTCT
CAGTGTGCAGTTTTAGCTTTGATAGAAATAAGATCAGCACAATAATAACC
TGATTAAACAAATCGTTTTAGTTTTGACTTAATTTCATCGAAGAGATCTG
CATCGAGTACTTTTACTTGCTTTTCTTTCATTCATACCTAAGTAACTGTT
GTGTTGTTTTGAAGTTCTTCTGAATGTTTGAAACACTTTCTTGCAGATTC
TGAAGCGCTTTGATCATCCTCTTCCACCCAAAGAAGTTCTAAGACTCATG
CAAGAAGATGATTTGAAGACGTAAGTCACAAATAAATATTGTGAATTTCA
AGGAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043828XLOC_043828Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070362-exon-scaffold_55-1491911889:175105..175279TCONS_00070362-exon-scaffold_55-1491911889:175105..175279Clytia hemisphaericaexon
TCONS_00070362-exon-scaffold_55-1510915933:175105..175279TCONS_00070362-exon-scaffold_55-1510915933:175105..175279Clytia hemisphaericaexon
TCONS_00070362-exon-scaffold_55-1575043694:175105..175279TCONS_00070362-exon-scaffold_55-1575043694:175105..175279Clytia hemisphaericaexon
TCONS_00070362-exon-scaffold_55-1491911889:175951..176061TCONS_00070362-exon-scaffold_55-1491911889:175951..176061Clytia hemisphaericaexon
TCONS_00070362-exon-scaffold_55-1510915933:175951..176061TCONS_00070362-exon-scaffold_55-1510915933:175951..176061Clytia hemisphaericaexon
TCONS_00070362-exon-scaffold_55-1575043694:175951..176061TCONS_00070362-exon-scaffold_55-1575043694:175951..176061Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:175105..176061 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.5713	12.0582	3.11128	1.01464	30.8805	21.962	12.9537	16.5369	5.40302	7.17055	15.7758	7.01526	8.52845	8.54056	9.362	7.53515	10.6579	10.2192	6.81579	7.64167	7.0848	7.77537	12.6026	13.8446	14.7514	13.6041	5.65182	6.70197	12.708	10.8759
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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