TCONS_00070353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070353
Unique NameTCONS_00070353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070353 ID=TCONS_00070353|Name=TCONS_00070353|organism=Clytia hemisphaerica|type=transcript|length=501bp
TTTTCGGCATACATCTCTTCCAATAGCAGTTCTAGACCTGAGCCTTTCAT
CATGGTCCCGATACTTCCCACAAAACTCATTAAAGTGTGGAAACCTCCAA
GCCGACATACAATATCCAGTGATTCTTGCTTTATTATTCCCATGGCCTTT
AACCAAAGCGGTTGATCGAAGGTGGCACTTGGTGTTGTGATTCCAGCTTT
CTTAGCTTCGTTGATGATAAACTGTAGCGTTGAGTAGATACATGTCGGAC
TTGATGGTGTCAGATCGATAATAGGTAGAAATGTAACGGTAGACTTGGAT
TTGGGATCGGGTGTAGTGCCAGTTGCTAATTGCATATAGCCGTTCCAATT
AGGTCTTGTTTTTGAATGACTGAACCAACCACAATGCCATATGATGTCGT
AATTGATTGAAGATGGAGTTGTAGATACAGATTGAAGTTCATTGTAAGGC
TTCAATAATAGCTGATTCAGTCCGGTTTTCGGGTTATTGAAGTAATGAAC
A
Run BLAST on NCBI

protein sequence of TCONS_00070353-protein

>TCONS_00070353-protein ID=TCONS_00070353-protein|Name=TCONS_00070353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
VHYFNNPKTGLNQLLLKPYNELQSVSTTPSSINYDIIWHCGWFSHSKTRP
NWNGYMQLATGTTPDPKSKSTVTFLPIIDLTPSSPTCIYSTLQFIINEAK
KAGITTPSATFDQPLWLKAMGIIKQESLDIVCRLGGFHTLMSFVGSIGTM
MKGSGLELLLEEMYAE
Run BLAST on NCBI

transcript from alignment at scaffold_54:14914..15414

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070353 ID=TCONS_00070353|Name=TCONS_00070353|organism=Clytia hemisphaerica|type=transcript|length=501bp|location=Sequence derived from alignment at scaffold_54:14914..15414 (Clytia hemisphaerica)
TGTTCATTACTTCAATAACCCGAAAACCGGACTGAATCAGCTATTATTGA
AGCCTTACAATGAACTTCAATCTGTATCTACAACTCCATCTTCAATCAAT
TACGACATCATATGGCATTGTGGTTGGTTCAGTCATTCAAAAACAAGACC
TAATTGGAACGGCTATATGCAATTAGCAACTGGCACTACACCCGATCCCA
AATCCAAGTCTACCGTTACATTTCTACCTATTATCGATCTGACACCATCA
AGTCCGACATGTATCTACTCAACGCTACAGTTTATCATCAACGAAGCTAA
GAAAGCTGGAATCACAACACCAAGTGCCACCTTCGATCAACCGCTTTGGT
TAAAGGCCATGGGAATAATAAAGCAAGAATCACTGGATATTGTATGTCGG
CTTGGAGGTTTCCACACTTTAATGAGTTTTGTGGGAAGTATCGGGACCAT
GATGAAAGGCTCAGGTCTAGAACTGCTATTGGAAGAGATGTATGCCGAAA
A

Coding sequence (CDS) from alignment at scaffold_54:14914..15414

>TCONS_00070353 ID=TCONS_00070353|Name=TCONS_00070353|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_54:14914..15414 (Clytia hemisphaerica)
GTTCATTACTTCAATAACCCGAAAACCGGACTGAATCAGCTATTATTGAA
GCCTTACAATGAACTTCAATCTGTATCTACAACTCCATCTTCAATCAATT
ACGACATCATATGGCATTGTGGTTGGTTCAGTCATTCAAAAACAAGACCT
AATTGGAACGGCTATATGCAATTAGCAACTGGCACTACACCCGATCCCAA
ATCCAAGTCTACCGTTACATTTCTACCTATTATCGATCTGACACCATCAA
GTCCGACATGTATCTACTCAACGCTACAGTTTATCATCAACGAAGCTAAG
AAAGCTGGAATCACAACACCAAGTGCCACCTTCGATCAACCGCTTTGGTT
AAAGGCCATGGGAATAATAAAGCAAGAATCACTGGATATTGTATGTCGGC
TTGGAGGTTTCCACACTTTAATGAGTTTTGTGGGAAGTATCGGGACCATG
ATGAAAGGCTCAGGTCTAGAACTGCTATTGGAAGAGATGTATGCCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043820XLOC_043820Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070353-proteinTCONS_00070353-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070353-exon-scaffold_54-1491911889:14914..15414TCONS_00070353-exon-scaffold_54-1491911889:14914..15414Clytia hemisphaericaexon
TCONS_00070353-exon-scaffold_54-1510915933:14914..15414TCONS_00070353-exon-scaffold_54-1510915933:14914..15414Clytia hemisphaericaexon
TCONS_00070353-exon-scaffold_54-1575043694:14914..15414TCONS_00070353-exon-scaffold_54-1575043694:14914..15414Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_54supercontigscaffold_54:14914..15414 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.137568	0.403765	1.61822	0.741338	1.86717	1.52829	0.430833	0.466499	0.300414	0.363727	0.669247	0.578375	0.137982	0.302099	0.337545	0	0	0.763617	0.07925	0.357599	0	0	0.686176	1.60406	0.10337	0.325896	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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