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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070345 ID=TCONS_00070345|Name=TCONS_00070345|organism=Clytia hemisphaerica|type=transcript|length=1688bp
atCGTGCTTTCAGCTACAGTGAATCTCACCGCTCACTAATGGCTGTATAA
TGGAGTATATTTAACAATACACAAAATTTACAATCGAGTCAAAAGTTTTT
ACGACTTTGATAATTCTCAACGTCAAAAATACTTCTGTTAACAATATATA
AAGATATCGTTacaataaaaatatctttccaacttGTAAATATTTGTGTT
AAAAGTTGAACTGCTGTGTCTATCCCAGTCAGAAATAAGAAATTACTGAA
AATCAAAGCCAATATTGGAACCGTCAATATTACGGAGCGGAGTCTAACAG
AATTCCGAATTGATTCCTCACTGCCGAATCTCTTGACCAAAATCTTTGCC
ATCGATTCAAGAACAATCCCAACCCAATTGACCACACCCCAAGTGAACAA
AAGTTCAGTTGCACCATGCCAATATGCCACAAagccaaaacataaaaaag
aagCTGAAATCTGTCTCGCCAATCCTTTCTTAGACCCTCCCATTGGATAA
TAAATACAATGTTGAAGGAATTGGTACAGACCTCGATCAAATGTTCGCCA
CATTTCCATAAAAGTTGTAGTCATGGAAACACATTTAGGTGGACCAGGTG
GAGTAAAGCCATCAATTTTTGCAAATAAGCCAGAAAACCGGAAAAATATG
ATATACTTGATGCAAAATAGTTGAACGTGAACCCAAGCGATGGACAACGC
TTCAAGTCCAGTTTGCGTCGAAAGTAAATCTGTTTGATGGATCACTTTTG
GAGTATACAAATGATTCATAAACAACTCCAAGCAAGCTGCGTATGTTATA
CACGTAATCACATCTTTGGCAATCTCGGAGATCCTGGATTCCTTTGTTTT
GCCGTTAGATTTAacaatttcgaaattttgctgTTGAAAGTCTTTATAAG
TCATCAGCGGCCCGTTCAAAAATAAAGGTAGATAAAACATATAATGAAGA
AAATCAGTGAGGTTGTTTTCTTGTCTTTCTTCCATAACTGAAGAACCATA
ATCGATGCATCGGATGTAAACCATCAGCAGTGAAAATCTGACGATGTCTG
CTACTTGAGGACTAATGACGAAGAAATCTTTCTGTATTTCGAATTTGAAG
TTGATTGTATAGATCATGAACAAGGCGTAGATCCACAGCAGAGAACGTCT
TTCGACACGAATGATTATGTAGAAAAACATAATATGTGTCAAAAACAACA
TCACTGCGTTTGTAGAAAGTAACAAGGCCAATGCAAGAGCTCCCGCCAGT
GTAAAGTAAACTTTTCGATATTTTGGAAAGTTTTGAGACATCAATCTACC
AAGGATCGAATAAATGGAAAAAGCTATACCTAAGGGTAGAGCATGTTCCC
ACCACGCGTGCCATTCATGATCATCTGGTGCACCATCTTCCAGGCCATCA
ATGTAGGTCAGCTTCCGTAAGCGATAAACGACGTGAAGAGGATAGAGACA
AAGAAATATCCTTAAACTCCAGATCAAGGttgtttcaattttctgaaaac
cATTCATTATTGCCTATTTCTTTACTTTGAAGCTAAAAAGTTagaaatga
taaaacaaaacCTTATGGTAAATGTCTAAAATATCACATTATATTCCTTT
TTTACAGGAATAACTGTTAAGAGAAATTCAGTACCATATATGTGCGTGTT
CCTGTaagattttcaatcaaaaaggGTATATCAAAAAA Run BLAST on NCBI transcript from alignment at scaffold_54:42256..44008- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070345 ID=TCONS_00070345|Name=TCONS_00070345|organism=Clytia hemisphaerica|type=transcript|length=1753bp|location=Sequence derived from alignment at scaffold_54:42256..44008- (Clytia hemisphaerica)
ATCGTGCTTTCAGCTACAGTGAATCTCACCGCTCACTAATGGCTGTATAA
TGGAGTATATTTAACAATACACAAAATTTACAATCGAGTCAAAAGTTTTT
ACGACTTTGATAATTCTCAACGTCAAAAATACTTCTGTTAACAATATATA
AAGATATCGTTACAATAAAAATATCTTTCCAACTTGTAAATATTTGTGTT
AAAAGTTGAACTGCTGTGTCTATCCCAGTCAGAAATAAGAAATTACTGAA
AATCAAAGCCAATATTGGAACCGTCAATATTACGGAGCGGAGTCTAACAG
AATTCCGAATTGATTCCTCACTGCCGAATCTCTTGACCAAAATCTTTGCC
ATCGATTCAAGAACAATCCCAACCCAATTGACCACACCCCAAGTGAACAA
AAGTTCAGTTGCACCATGCCAATATGCCACAAAGCCAAAACATAAAAAAG
AAGCTGAAATCTGTCTCGCCAATCCTTTCTTAGACCCTCCCATTGGATAA
TAAATACAATGTTGAAGGAATTGGTACAGACCTCGATCAAATGTTCGCCA
CATTTCCATAAAAGTTGTAGTCATGGAAACACATTTAGGTGGACCAGGTG
GAGTAAAGCCATCAATTTTTGCAAATAAGCCAGAAAACCGGAAAAATATG
ATATACTTGATGCAAAATAGTTGAACGTGAACCCAAGCGATGGACAACGC
TTCAAGTCCAGTTTGCGTCGAAAGTAAATCTGTTTGATGGATCACTTTTG
GAGTATACAAATGATTCATAAACAACTCCAAGCAAGCTGCGTATGTTATA
CACGTAATCACATTTTTGGCAATCTCGGAGATCCTGGATTCCTTTGTTTT
GCCGTTNATGTTATACACGTAATCACATCTTTGGCAATCTCGGAGATCCT
GGATTCCTTTGTTTTGCCGTTAGATTTAACAATTTCGAAATTTTGCTGTT
GAAAGTCTTTATAAGTCATCAGCGGCCCGTTCAAAAATAAAGGTAGATAA
AACATATAATGAAGAAAATCAGTGAGGTTGTTTTCTTGTCTTTCTTCCAT
AACTGAAGAACCATAATCGATGCATCGGATGTAAACCATCAGCAGTGAAA
ATCTGACGATGTCTGCTACTTGAGGACTAATGACGAAGAAATCTTTCTGT
ATTTCGAATTTGAAGTTGATTGTATAGATCATGAACAAGGCGTAGATCCA
CAGCAGAGAACGTCTTTCGACACGAATGATTATGTAGAAAAACATAATAT
GTGTCAAAAACAACATCACTGCGTTTGTAGAAAGTAACAAGGCCAATGCA
AGAGCTCCCGCCAGTGTAAAGTAAACTTTTCGATATTTTGGAAAGTTTTG
AGACATCAATCTACCAAGGATCGAATAAATGGAAAAAGCTATACCTAAGG
GTAGAGCATGTTCCCACCACGCGTGCCATTCATGATCATCTGGTGCACCA
TCTTCCAGGCCATCAATGTAGGTCAGCTTCCGTAAGCGATAAACGACGTG
AAGAGGATAGAGACAAAGAAATATCCTTAAACTCCAGATCAAGGTTGTTT
CAATTTTCTGAAAACCATTCATTATTGCCTATTTCTTTACTTTGAAGCTA
AAAAGTTAGAAATGATAAAACAAAACCTTATGGTAAATGTCTAAAATATC
ACATTATATTCCTTTTTTACAGGAATAACTGTTAAGAGAAATTCAGTACC
ATATATGTGCGTGTTCCTGTAAGATTTTCAATCAAAAAGGGTATATCAAA
AAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070345-exon-scaffold_54-1575043694:43198..44008 | TCONS_00070345-exon-scaffold_54-1575043694:43198..44008 | Clytia hemisphaerica | exon |
| TCONS_00070345-exon-scaffold_54-1575043694:42256..43132 | TCONS_00070345-exon-scaffold_54-1575043694:42256..43132 | Clytia hemisphaerica | exon |
| TCONS_00070345-exon-scaffold_54-1510915933:43198..44008 | TCONS_00070345-exon-scaffold_54-1510915933:43198..44008 | Clytia hemisphaerica | exon |
| TCONS_00070345-exon-scaffold_54-1510915933:42256..43132 | TCONS_00070345-exon-scaffold_54-1510915933:42256..43132 | Clytia hemisphaerica | exon |
| TCONS_00070345-exon-scaffold_54-1491911889:43198..44008 | TCONS_00070345-exon-scaffold_54-1491911889:43198..44008 | Clytia hemisphaerica | exon |
| TCONS_00070345-exon-scaffold_54-1491911889:42256..43132 | TCONS_00070345-exon-scaffold_54-1491911889:42256..43132 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_54 | supercontig | scaffold_54:42256..44008 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004299 | MBOAT_fam |
Blast
BLAST of TCONS_00070345 vs. Swiss-Prot (Human)
Match: HHAT (Protein-cysteine N-palmitoyltransferase HHAT OS=Homo sapiens GN=HHAT PE=1 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 3.610e-36 Identity = 87/297 (29.29%), Postives = 148/297 (49.83%), Query Frame = -2
Query: 188 IRCIDYGSSVME---ERQENNLTDF-----LHYMFYLPLFLNGPLMTYKDF----QQQNFEIVKSNGKTKESRISEIAKDVITCITYAACLELFMNHLYTPKVIHQTDLLSTQTGLEALSIAWVHVQLFCIKYIIFFRFSGLFAKIDGFTPPGPPKCVSMTTTFMEMWRTFDRGLYQFLQHCIYYPMGGSKKGLARQISASFLCFGFVAYWHGATELLFTWGVVNWVGIVLESMAKILVK---------RFGSEESIRNSVRLRSVILTVPILALIFSNFLFLTGIDTAVQLLTQIF 1015
+RC+ Y S +E ++ T + L Y+FY P+ NGP++++ +F QQQ + +K++ + +A + + + EL + +Y + LL T + +A V F +KY++ F L ++DG TPP P+CVS +F MWR FD GL+ FL +Y P+GGS+ GL + ++ + F FV+YWHG + L+ W +NW+G+ +E+ + LV+ R+ S ++ R R + + + LI SN +FL G + +IF
Sbjct: 175 VRCLYYTSFSLELCWQQLPAASTSYSFPWMLAYVFYYPVLHNGPILSFSEFIKQMQQQEHDSLKAS-------LCVLALGLGRLLCWWWLAELMAHLMYMHAIYSSIPLLETVSCWTLGGLALAQVLFFYVKYLVLFGVPALLMRLDGLTPPALPRCVSTMFSFTGMWRYFDVGLHNFLIRYVYIPVGGSQHGLLGTLFSTAMTFAFVSYWHGGYDYLWCWAALNWLGVTVENGVRRLVETPCIQDSLARYFSPQARR---RFHAALASCSTSMLILSNLVFLGGNEVGKTYWNRIF 461
The following BLAST results are available for this feature:
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