TCONS_00070342 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070342
Unique NameTCONS_00070342
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070342 ID=TCONS_00070342|Name=TCONS_00070342|organism=Clytia hemisphaerica|type=transcript|length=2878bp
GTATTACGAGAAAGAAACAGTCAATTGATATACGTCGATGATAAAGTTGA
GTATTTTTTGAAGGTTGAAGAAAATGAAGTCTGTTATTGTTTTATCGCTG
CTGTTAacattgaatttatttttcgtcGcatgCGAGTACGAGACACCCAC
CAAAGAAGAACAACAAAAGGCCATTGAGGAATGTCCAGACTTGTGCTCCA
AAATGAGCCAAAGTTGGTTGGGTAATGCAGTTCATCCCACCGATAAACAT
AAATTCTTAGCATGTTGGCATGGAACAACAATGGGTTGCGGTGTGTGTGA
GAAACCAAGATATTTTGATGCTGAAAAGTTGAGATGTGTGTGGCCTGGTG
GTTTGGATTATGACCCGATGACCGTATAAATTAAGGTGGTCGTTAGAACG
ATGATTTTTAATGGAACTAGAATTTTAACAGGCTTTCCTACTCATACTCT
AACGAATAAACCTCTTGTAAagattatacacgttttttataagaacatcc
aaaaattttgaaacctttcgatgttcttaactttttgagttttaagccta
aaaatattcttaacatgttcttattgtcaccgttttttgagtatttttgt
ccattctcctaagaaatcggatgtTTTACGAagccttaatatgttcttaa
cttgttcttgatattttggtcatcgaagccttatgttcttatacagtttg
ttcttataaaaaacaacgtgtatatCTATAGGTCTAGTAAATAGTAAATT
CTCTAGCTTTAAGTGTTCACTCATTTTTCTaccattgtttttaaaaactt
tcaaacggGATTAGTCTAATTCCGAGGGActagctggagtttttacaagt
tctttgatgactctgttggtcgttaaatgttgagacaaacgattttatta
ctttttctaaagaacgcgtcatccctattgtttaaaaataaccaatcagt
taagcatcttgtaaaaactccagctcatctcaATTCCGATGGTATGGTTT
CTACACTGAAAGCGAATGGACTTAAGAAATGCTTAGGAGGTACATAGTAT
TTTCTAACTCGAAGGTCATTCATCCTTATTTTCTAAACcgaatttttaaa
taattaacTGATACAACATTCTATATAcactacaaaaaaaattaacaatt
aTTTCAATTGtctaaattattattatttcgcATTATTATAGCTTATAAAG
CttgaaagaatttcaaaacatagAAAATCATGTTTCGATTTTATTAGTGT
CTCACTTCTTTTCCAATAATATTTACAAACAGTCTCATTATTTACAAATC
AGCCATTGAGGTATTATGTACAACAGTGTAAGCGGTACCAACGCCGCTAG
AAACGCTCGTCAGAAAAGCGTCAGCGTTAAATGACGTTATAGGGGGTAAC
ATTGTATTTAAAGTATTATTCGTATCTGGGGTTTGAGGTGTTGTATAGAC
TATCAGCTGATTCGTTGCAGCGACAGGGTTAGAGTAACTTGTAATCGCAC
GTTGTAAAACCATGTGTTGAGGCTCAGTCACGCGTTGTATTTGAGGCGTA
GTGGCGGCCGTTTGTTGAATGATAAGTTGTTGCTGCTGTGTATGTGATTG
GACAGTGGGTTGTACTAAAGGATCGTGTGTTGTGGAAGAGAAAAGCATTG
TGGGTAATGTAGCTAAAGAGATCGAAGGTTGTTGCAGAGAAATTGTCATT
GGTTGACTAACAGCTGCTACTGTCGGTGGAGCCTGAGTGGCGGCAATTAA
ATGCACCTGTTGGGCGGCCGCGCGGAGGTCAGTCAGCGGTGAAGAGTCCG
TAAGATTACTAATGCTCGAAGTGTTCAACATATTGAGGGAAACCGGATTA
GCAAGCgtggtcaaaatattaatttcATTGTTCGTATTACGTAGTGGAGA
AGTCATTAGCGATATATTTGGAGTGACTTTGGTTTGATTATTTCCGATGG
CTTGTAGTATGTTATTCATATTAGCCGTTGGTGTAAGAAACTCTGCCAGT
CCTGGATTATTGTTAGCTGAAGCAACGATTGTAGGCATCACTGTCTCCGT
GTTTACAACGTTCGGTACAAGGTTTTGTGGCACGACGTTTTGTTGTATAA
CCGACGCTTGAATGGGAGTCGTAACTGCTTGAACTACAACAGGATTTCCG
ACTGATTGTTCAATTGCACTTGGTGTTACTATATATTCTGTAGCAGCATT
TTCCATAGGTTGGCGTATCGCCTGTTGGGCGGCCGCCTGTGCTTGGGCGG
CTAGAGTAGCTTGAGAGTTTTGTAGCTGTTGTTGAAGCAATTGAATTTGA
AGTTGTaattgttgttgctgttgtaaTTGAAGCGCTTGTAGTGTCATTGT
GTTCGGTACCGTCACAGTAGACTCGTTCGTCAAACCTGCCGGTATCGAAA
TAAACCCGTTATTTGAGAATTGTCCATTAACTGCAATAACAGCCGATGGA
TAAGTGGATAAGTTTGTGTTTTGAGCAGACATTGAGACAAGTGAATCAGT
GTTTTCGACTATCTTGATATTGGCCGGGATACGACCTCCCGTTCTCGCag
aattgaaatcaattttctcCCCCATCAGTACAACTCCTACATCATTCTTA
CTGATGTCCGTATTATTCTTAGCTTTCTTTCGCGTTCTCTTCTTTTGTGG
TTCGGCTAACGGTTTCTCGGTCTCGGCACTTTGTTGCATCATAGGGGCGA
GGCCAGCAGAACTGGCAGCTGTTTGAAGGATTTGGTAAGATGGAACGAAA
GCTGTTTCTTCTGTCTCCTCGCCGTTCAATCCTACACTCTTTGGATTGAC
TCGCCAATATTTCTTCAGCCCGTGTTCCGGAGGCTCCCGATCTCCGCCTA
gcgaagaaaagaaaaatgtttcagaTTG
Run BLAST on NCBI

transcript from alignment at scaffold_54:33037..36108-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070342 ID=TCONS_00070342|Name=TCONS_00070342|organism=Clytia hemisphaerica|type=transcript|length=3072bp|location=Sequence derived from alignment at scaffold_54:33037..36108- (Clytia hemisphaerica)
GTATTACGAGAAAGAAACAGTCAATTGATATACGTCGATGATAAAGTTGA
GTATTTTTTGAAGGTTGAAGAAAATGAAGTCTGTTATTGTTTTATCGCTG
CTGTTAACATTGAATTTATTTTTCGTCGGTAAGAGACTTTGTGGGATTGA
ATCGTACAAGTTTTCAAATGATCACGAAATGTGATAAACTAAGGCACACT
AAGAGCGAAGATCGCTAAAAACCATTGTTTTGAATTATGGATTCAAGATT
ATTTTATTCCAAAATTTACGTTTTTCTTTAAACTGAGAATTGATCAAGAA
TTAAACTTTTTTATTTTTTTAGCATGCGAGTACGAGACACCCACCAAAGA
AGAACAACAAAAGGCCATTGAGGAATGTCCAGACTTGTGCTCCAAAATGA
GCCAAAGTTGGTTGGGTAATGCAGTTCATCCCACCGATAAACATAAATTC
TTAGCATGTTGGCATGGAACAACAATGGGTTGCGGTGTGTGTGAGAAACC
AAGATATTTTGATGCTGAAAAGTTGAGATGTGTGTGGCCTGGTGGTTTGG
ATTATGACCCGATGACCGTATAAATTAAGGTGGTCGTTAGAACGATGATT
TTTAATGGAACTAGAATTTTAACAGGCTTTCCTACTCATACTCTAACGAA
TAAACCTCTTGTAAAGATTATACACGTTTTTTATAAGAACATCCAAAAAT
TTTGAAACCTTTCGATGTTCTTAACTTTTTGAGTTTTAAGCCTAAAAATA
TTCTTAACATGTTCTTATTGTCACCGTTTTTTGAGTATTTTTGTCCATTC
TCCTAAGAAATCGGATGTTTTACGAAGCCTTAATATGTTCTTAACTTGTT
CTTGATATTTTGGTCATCGAAGCCTTATGTTCTTATACAGTTTGTTCTTA
TAAAAAACAACGTGTATATCTATAGGTCTAGTAAATAGTAAATTCTCTAG
CTTTAAGTGTTCACTCATTTTTCTACCATTGTTTTTAAAAACTTTCAAAC
GGGATTAGTCTAATTCCGAGGGACTAGCTGGAGTTTTTACAAGTTCTTTG
ATGACTCTGTTGGTCGTTAAATGTTGAGACAAACGATTTTATTACTTTTT
CTAAAGAACGCGTCATCCCTATTGTTTAAAAATAACCAATCAGTTAAGCA
TCTTGTAAAAACTCCAGCTCATCTCAATTCCGATGGTATGGTTTCTACAC
TGAAAGCGAATGGACTTAAGAAATGCTTAGGAGGTACATAGTATTTTCTA
ACTCGAAGGTCATTCATCCTTATTTTCTAAACCGAATTTTTAAATAATTA
ACTGATACAACATTCTATATACACTACAAAAAAAATTAACAATTATTTCA
ATTGTCTAAATTATTATTATTTCGCATTATTATAGCTTATAAAGCTTGAA
AGAATTTCAAAACATAGAAAATCATGTTTCGATTTTATTAGTGTCTCACT
TCTTTTCCAATAATATTTACAAACAGTCTCATTATTTACAAATCAGCCAT
TGAGGTATTATGTACAACAGTGTAAGCGGTACCAACGCCGCTAGAAACGC
TCGTCAGAAAAGCGTCAGCGTTAAATGACGTTATAGGGGGTAACATTGTA
TTTAAAGTATTATTCGTATCTGGGGTTTGAGGTGTTGTATAGACTATCAG
CTGATTCGTTGCAGCGACAGGGTTAGAGTAACTTGTAATCGCACGTTGTA
AAACCATGTGTTGAGGCTCAGTCACGCGTTGTATTTGAGGCGTAGTGGCG
GCCGTTTGTTGAATGATAAGTTGTTGCTGCTGTGTATGTGATTGGACAGT
GGGTTGTACTAAAGGATCGTGTGTTGTGGAAGAGAAAAGCATTGTGGGTA
ATGTAGCTAAAGAGATCGAAGGTTGTTGCAGAGAAATTGTCATTGGTTGA
CTAACAGCTGCTACTGTCGGTGGAGCCTGAGTGGCGGCAATTAAATGCAC
CTGTTGGGCGGCCGCGCGGAGGTCAGTCAGCGGTGAAGAGTCCGTAAGAT
TACTAATGCTCGAAGTGTTCAACATATTGAGGGAAACCGGATTAGCAAGC
GTGGTCAAAATATTAATTTCATTGTTCGTATTACGTAGTGGAGAAGTCAT
TAGCGATATATTTGGAGTGACTTTGGTTTGATTATTTCCGATGGCTTGTA
GTATGTTATTCATATTAGCCGTTGGTGTAAGAAACTCTGCCAGTCCTGGA
TTATTGTTAGCTGAAGCAACGATTGTAGGCATCACTGTCTCCGTGTTTAC
AACGTTCGGTACAAGGTTTTGTGGCACGACGTTTTGTTGTATAACCGACG
CTTGAATGGGAGTCGTAACTGCTTGAACTACAACAGGATTTCCGACTGAT
TGTTCAATTGCACTTGGTGTTACTATATATTCTGTAGCAGCATTTTCCAT
AGGTTGGCGTATCGCCTGTTGGGCGGCCGCCTGTGCTTGGGCGGCTAGAG
TAGCTTGAGAGTTTTGTAGCTGTTGTTGAAGCAATTGAATTTGAAGTTGT
AATTGTTGTTGCTGTTGTAATTGAAGCGCTTGTAGTGTCATTGTGTTCGG
TACCGTCACAGTAGACTCGTTCGTCAAACCTGCCGGTATCGAAATAAACC
CGTTATTTGAGAATTGTCCATTAACTGCAATAACAGCCGATGGATAAGTG
GATAAGTTTGTGTTTTGAGCAGACATTGAGACAAGTGAATCAGTGTTTTC
GACTATCTTGATATTGGCCGGGATACGACCTCCCGTTCTCGCAGAATTGA
AATCAATTTTCTCCCCCATCAGTACAACTCCTACATCATTCTTACTGATG
TCCGTATTATTCTTAGCTTTCTTTCGCGTTCTCTTCTTTTGTGGTTCGGC
TAACGGTTTCTCGGTCTCGGCACTTTGTTGCATCATAGGGGCGAGGCCAG
CAGAACTGGCAGCTGTTTGAAGGATTTGGTAAGATGGAACGAAAGCTGTT
TCTTCTGTCTCCTCGCCGTTCAATCCTACACTCTTTGGATTGACTCGCCA
ATATTTCTTCAGCCCGTGTTCCGGAGGCTCCCGATCTCCGCCTAGCGAAG
AAAAGAAAAATGTTTCAGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043813XLOC_043813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070342-exon-scaffold_54-1575043694:35981..36108TCONS_00070342-exon-scaffold_54-1575043694:35981..36108Clytia hemisphaericaexon
TCONS_00070342-exon-scaffold_54-1575043694:33037..35786TCONS_00070342-exon-scaffold_54-1575043694:33037..35786Clytia hemisphaericaexon
TCONS_00070342-exon-scaffold_54-1510915933:35981..36108TCONS_00070342-exon-scaffold_54-1510915933:35981..36108Clytia hemisphaericaexon
TCONS_00070342-exon-scaffold_54-1510915933:33037..35786TCONS_00070342-exon-scaffold_54-1510915933:33037..35786Clytia hemisphaericaexon
TCONS_00070342-exon-scaffold_54-1491911889:35981..36108TCONS_00070342-exon-scaffold_54-1491911889:35981..36108Clytia hemisphaericaexon
TCONS_00070342-exon-scaffold_54-1491911889:33037..35786TCONS_00070342-exon-scaffold_54-1491911889:33037..35786Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_54supercontigscaffold_54:33037..36108 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.89658	2.14749	0.294846	0	7.95785	6.97941	10.4533	11.331	12.2215	12.7395	6.91158	9.56578	5.91293	4.35517	8.05457	7.54859	4.03623	4.15732	2.70046	1.24837	1.53171	1.49044	6.64091	6.15758	3.80079	5.1591	1.35426	2.52377	4.34483	5.84985
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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