|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070337 ID=TCONS_00070337|Name=TCONS_00070337|organism=Clytia hemisphaerica|type=transcript|length=3309bp
TTTGGAATTTGGTTTGAGACGCACGCGTCTTGTATTTTGTTGGAAAACTT
GCAAATATGTTGTTGAATTCGAAAATTATTGCTAAAATGGATATCTCCAG
CATGCAGACATGCGAGCTCTGCCCTGGGAAGATATTTTTATCACAAATGG
AGTTGGATCACCATAAAAGTTCGCATCAAGCAGAAAATGAATCAGTTCGG
AATATTACTTCAACCAAACTGGCACAGCTcaagaaaaccaaaaaaatcCT
TTCAGCTAAGTTCAAAGCAATCAAGAATGAAGTCAGCTTAATGTGTAAGT
GGAATGTTCACGATGAAAAGGCTGTTGGGCTTCTTGAGAAAGAACTGGTT
TCTCTTAAACAACAAATCGATGAGAAAGATACCGTTATAAAACTTTTCAG
TGAAAACCAGGAGAAGTCGGCTACCGATGACCTCGTTTATGAGTTCAAAA
AACGATTAGATACTGAGTATGAAGAACTGATGCGTCGGGCCATAAAGCGT
GACCAACCTCAAACATCTTCATCAAACTTATCTATATCTGCTGGACCTTC
AAAGGAACATTCATCTTCAAACTGCACATGTGCTACAGCTGAAACCAATC
TTGAAAAGTTTTCTGAGGAGGTTTCagaactaaaagaaaaaaaaNCAAAG
GAACATTCATCTTCAAACTGCACATGTGCTACAGCTGAAACCAATCTTGA
AAAGTTTTCTGAGGAGGTTTCagaactaaaagaaaaactctcCGAATACA
CTGCCATGGTTCAAGACATGACTCTGAAAAATCAAGAGGTTGAAGGTGAT
CTTGCACAGGCCGTGGAAGCTCTCGAATCATCAAATATAACAATCCGACA
TATGATACAGGATAAGGAAAAGATCGAAGCCAGACTCCGCGCAAACGAAG
AAAAGATCAAAGAACAATACAAGCTTATTCAGGATCACGAAAAACGATCT
CCCTCGGTCGAGATTCAAGAAAAAATCGCTTTGCTTCATGAGCAATTGAC
GGCAACAGATGAAGAGTTAGTTCATCTGATGGATTGTGTCGATGAAAAAG
AATGCGATCTAGCGCATGCGCATAGTGAACAAAAATTGATGGAAAATGAA
AACGTTATCCTCACACAACTCATTGACGAGCTTAGGGAAGAACAAAAAGA
AATGTGCTTACAATGGGAAGATGAAATGAAAGAACTCTTATCCAAGCAGC
GATCACTGGAACAAGAAAATCAATCCTTTCTTTGCAAACTGGCCGATTAT
GAGGTTGCAAGTAAAGACCAGACAGTTAAGATCGATCAATTGACGTTGTA
TGTTGAGGAGCTAGAAAGGCAGAAGGCTCAAGACAAGGAACAAATTGTGC
TTCTGACTGCTGAACGAGATGAGTTCAAGCTAAATTTAATTTCCCTTCAA
CAAACACATGAAAAATGTATCGCAGAGAAACAGGAATTGATAGCTTCAAG
TGAAAAATCTGTAGAGGATATGCGTCTCAAGATGCAAAAATATTTAGatg
atgaaaaagaaacatCACAAGAGCTTCAAGCAAACCTTGAAGAACAGCTC
AAGGAGTTACGGCGTAAACATAGGACTGAAATCTCAAAGTACGATGGCGA
GAggttaaatcttcaaaacacCATTGAAGATCTTGAGAAAGAGATTAACA
TCGCAAAGGCTCTACCAAAAGTTGATACTGGAAAAGTCAAAAGCTTGGAA
AAAGACTTGTCGGACGCAAACTTTCAACTATCGAACAAAGCAGAGCTTGA
GTATACAGTAGAGGAACTCAAAAAGGATCTAAACTCTATTCAAAAGTCAT
TAGATGTTGCCAACAGTCGGAAAGATTCTTTTCGAAAGGAAATTAGTGAA
CTAAAAGAGTTGCTGGACACAGAAATAGGGAAGACGAGTGACTTCAGGCG
TCAAAGAGACCTTGCCGAGAAAAAGTTTAACAATCGTCAACAGCAACTCG
CCAGAGCTGAAGAAGATGTTGCCACTATTAAAACTCAACTTGTAGGTTTA
AAGAAACAGCTAGCCTTAAAAGACACTGAACATCAAAGAGAGAGAGAACG
ATTGATGGTTCAGATTAACGATTTGCAAATAGAGAAGGATCATGCTCAAA
AAAGTGTCTGTGAAAATCAGAAGTTACAGTCAGATATTGCAAAGATTACC
TCGGAGAATGAAACGCTCTCTATTAAAGTTTCAAACAAGAACAAGTCCGA
AAAGAATCTTACTGATGAAATCAAATGTTTAACTAAAAAAGTCCAACGGT
TAGATGTTGTCTCAGCGGGCAACGAGAAGCTTACATCACAAAACGAAGCG
TTATGCGCAGAAATCTCAAATATGAAAGAACTAGAGAAGAGCCACGTGGA
GGAAATTCAATCCCTCACAATTAAAATcaatgatttggaaaaacttCAGC
AATCTGCACCTTCGAAAGACAAGCTTCTCCACTTAGAGGAAGAGCTCGCT
AGTGCCAAGGAACAACAAGAAGAGATTATCTTCACAAATGATAAGATCAA
AAAGCAATACAACGCTGCTAAAAATAAATTAGCCACAAGTCTTGACGAAA
CCGAACATCTCAAGGAAAAATCACTGCAGGCAGAAAAGCTAACAAAAGAC
ACAGAGCTGTTACTTgagaaaaaacacaaagaacTGGAAGCGAAAACTAC
AAAACTACAGAAACAAGACCGAGAAATTTCACAATTTCTCGATCAACGCT
CTGACTTGAAAAGCAAGATTACAAAAGTGGTAAAAAACAGTGAAAAGCTC
AAAATGGCGAAAGAGTTGGCGGAGCAGAAATTAAAGGAGGAGAAGATAAG
AACAACAGAATTGGGAGAAATAGTAAATGAGCTTCGAGACAAAGACCATA
AAGCTACCGAAGCTCTACTTTTCGAAGAGCAACGAAAGAGGTCAGACCTC
GAAGAGATCATCGATCAAATGAAACTAAAAGAACATCAAACTCATAAAGA
ACTTACGAGTGAAAAACAAAAGACATCCAAACTTGAGCAAATGGTTATTC
AAATGAAAGCTGAAATGGAAGCTATCAAGATGGCAAACCAGTCGTCAAAA
GCTGACGAATTTTCCCAGAGAACGGAAGAAACAGTTGAACAACCAATACC
ACTTTTTCCAGCTAAAAGTGAAACATCTGGTAAACAACAAACTCgtattg
tcaatgatgatttTTCCGACGGAGTTTCTGCATGTTCgtctgaagaagaa
gaaatcacACCAACCGCTTCACAAATCTCTTTAAGTGGTGAAATACCGGA
ACAAGCTGATCGTGATGAAAGCATCATCGATGATGATGAACAACGCCAAC
CTCAACAAG Run BLAST on NCBI transcript from alignment at scaffold_54:85249..89900+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070337 ID=TCONS_00070337|Name=TCONS_00070337|organism=Clytia hemisphaerica|type=transcript|length=4652bp|location=Sequence derived from alignment at scaffold_54:85249..89900+ (Clytia hemisphaerica)
TTTGGAATTTGGTTTGAGACGCACGCGTCTTGTATTTTGTTGGAAAACTT
GCAAATATGTTGTTGAATTCGAAAATTATTGCTAAAATGGATATCTCCAG
CATGCAGACATGCGAGCTCTGCCCTGGGAAGATATTTTTATCACAAATGG
AGTTGGATCACCATAAAAGTTCGCATCAAGCAGAAAATGAATCAGTTCGG
AATATTACTTCAACCAAACTGGCACAGCTcaagaaaaccaaaaaaatcCT
TTCAGCTAAGTTCAAAGCAATCAAGAATGAAGTCAGCTTAATGTGTAAGT
GGAATGTTCACGATGAAAAGGCTGTTGGGCTTCTTGAGAAAGAACTGGTT
TCTCTTAAACAACAAATCGATGAGAAAGATACCGTTATAAAACTTTTCAG
TGAAAACCAGGAGAAGTCGGCTACCGATGACCTCGTTTATGGTAAGAATG
TTTTCGAATTCGCTCACGTTCCACAATTAAATCTatagaaattttgataa
agtcatcttataaaaattataattggtcagccccggtgacccttcaaatc
ggtTCCGCGATTTTTTTTCCAGCAGCAGCATCCGCAGCGCATTTGGACTT
ATTTTTTaaatccgatttcggattattttcggaaaacaagttatcggtaa
aactttggcgcgaaaaatattttctattNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNACCTCTTTGACTTTAACAACgaattagg
tttcttgattgtacttccttctaatcgttttaagcttattgggctgacct
tccagcgcagctggtttattatacAACTCAATCAAGACAATATAACATAC
AGTTACCTAAAAAAACTTTCGACAGTTTACCCTGTCAGCCCTATAACTCA
CTCAGAGCAAAACTATTACTAAATTTAGCTTATAAACATAAGTGCCTCAA
CTATACAAGGACTTTCGATTCcgaattgaagattttttctccATTCAGAG
AGGATCCTATAAAATAACTTGTATTTTTGATTCTTTATAGAGTTCAAAAA
ACGATTAGATACTGAGTATGAAGAACTGATGCGTCGGGCCATAAAGCGTG
ACCAACCTCAAACATCTTCATCAAACTTATCTATATCTGCTGGACCTTCA
AAGGAACATTCATCTTCAAACTGCACATGTGCTACAGCTGAAACCAATCT
TGAAAAGTTTTCTGAGGAGGTTTCagaactaaaagaaaaaaaaNCAAAGG
AACATTCATCTTCAAACTGCACATGTGCTACAGCTGAAACCAATCTTGAA
AAGTTTTCTGAGGAGGTTTCagaactaaaagaaaaactctcCGAATACAC
TGCCATGGTTCAAGACATGACTCTGAAAAATCAAGAGGTTGAAGGTGATC
TTGCACAGGCCGTGGAAGCTCTCGAATCATCAAATATAACAATCCGACAT
ATGATACAGGATAAGGAAAAGATCGAAGCCAGACTCCGCGCAAACGAAGA
AAAGATCAAAGAACAATACAAGCTTATTCAGGATCACGAAAAACGATCTC
CCTCGGTCGAGATTCAAGAAAAAATCGCTTTGCTTCATGAGCAATTGACG
GCAACAGATGAAGAGTTAGTTCATCTGATGGATTGTGTCGATGAAAAAGA
ATGCGATCTAGCGCATGCGCATAGTGAACAAAAATTGATGGAAAATGAAA
ACGTTATCCTCACACAACTCATTGACGAGCTTAGGGAAGAACAAAAAGAA
ATGTGCTTACAATGGGAAGATGAAATGAAAGAACTCTTATCCAAGCAGCG
ATCACTGGAACAAGAAAATCAATCCTTTCTTTGCAAACTGGCCGATTATG
AGGTTGCAAGTAAAGACCAGACAGTTAAGATCGATCAATTGACGTTGTAT
GTTGAGGAGCTAGAAAGGCAGAAGGCTCAAGACAAGGAACAAATTGTGCT
TCTGACTGCTGAACGAGATGAGTTCAAGCTAAATTTAATTTCCCTTCAAC
AAACACATGAAAAATGTATCGCAGAGAAACAGGAATTGATAGCTTCAAGT
GAAAAATCTGTAGAGGATATGCGTCTCAAGATGCAAAAATATTTAGatga
tgaaaaagaaacatCACAAGAGCTTCAAGCAAACCTTGAAGAACAGCTCA
AGGAGTTACGGCGTAAACATAGGACTGAAATCTCAAAGTACGATGGCGAG
AggttaaatcttcaaaacacCATTGAAGATCTTGAGAAAGAGATTAACAT
CGCAAAGGCTCTACCAAAAGTTGATACTGGAAAAGTCAAAAGCTTGGAAA
AAGACTTGTCGGACGCAAACTTTCAACTATCGAACAAAGCAGAGCTTGAG
TATACAGTAGAGGAACTCAAAAAGGATCTAAACTCTATTCAAAAGTCATT
AGATGTTGCCAACAGTCGGAAAGATTCTTTTCGAAAGGAAATTAGTGAAC
TAAAAGAGTTGCTGGACACAGAAATAGGGAAGACGAGTGACTTCAGGCGT
CAAAGAGACCTTGCCGAGAAAAAGTTTAACAATCGTCAACAGCAACTCGC
CAGAGCTGAAGAAGATGTTGCCACTATTAAAACTCAACTTGTAGGTTTAA
AGAAACAGCTAGCCTTAAAAGACACTGAACATCAAAGAGAGAGAGAACGA
TTGATGGTTCAGATTAACGATTTGCAAATAGAGAAGGATCATGCTCAAAA
AAGTGTCTGTGAAAATCAGAAGTTACAGTCAGATATTGCAAAGATTACCT
CGGAGAATGAAACGCTCTCTATTAAAGTTTCAAACAAGAACAAGTCCGAA
AAGAATCTTACTGATGAAATCAAATGTTTAACTAAAAAAGTCCAACGGTT
AGATGTTGTCTCAGCGGGCAACGAGAAGCTTACATCACAAAACGAAGCGT
TATGCGCAGAAATCTCAAATATGAAAGAACTAGAGAAGAGCCACGTGGAG
GAAATTCAATCCCTCACAATTAAAATcaatgatttggaaaaacttCAGCA
ATCTGCACCTTCGAAAGACAAGCTTCTCCACTTAGAGGAAGAGCTCGCTA
GTGCCAAGGAACAACAAGAAGAGATTATCTTCACAAATGATAAGATCAAA
AAGCAATACAACGCTGCTAAAAATAAATTAGCCACAAGTCTTGACGAAAC
CGAACATCTCAAGGAAAAATCACTGCAGGCAGAAAAGCTAACAAAAGACA
CAGAGCTGTTACTTgagaaaaaacacaaagaacTGGAAGCGAAAACTACA
AAACTACAGAAACAAGACCGAGAAATTTCACAATTTCTCGATCAACGCTC
TGACTTGAAAAGCAAGATTACAAAAGTGGTAAAAAACAGTGAAAAGCTCA
AAATGGCGAAAGAGTTGGCGGAGCAGAAATTAAAGGAGGAGAAGATAAGA
ACAACAGAATTGGGAGAAATAGTAAATGAGCTTCGAGACAAAGACCATAA
AGCTACCGAAGCTCTACTTTTCGAAGAGCAACGAAAGAGGTCAGACCTCG
AAGAGATCATCGATCAAATGAAACTAAAAGAACATCAAACTCATAAAGAA
CTTACGAGTGAAAAACAAAAGACATCCAAACTTGAGCAAATGGTTATTCA
AATGAAAGCTGAAATGGAAGCTATCAAGATGGCAAACCAGTCGTCAAAAG
CTGACGAATTTTCCCAGAGAACGGAAGAAACAGTTGAACAACCAATACCA
CTTTTTCCAGCTAAAAGTGAAACATCTGGTAAACAACAAACTCgtattgt
caatgatgatttTTCCGACGGAGTTTCTGCATGTTCgtctgaagaagaag
aaatcacACCAACCGCTTCACAAATCTCTTTAAGTGGTGAAATACCGGAA
CAAGCTGATCGTGATGAAAGGTAAGGTTTCCTAAACACCATCCTGCTCAA
NAGCATGTTCgtctgaagaagaagaagaaatcacACCAACCGCTTCACAA
ATCTCTTTAAGCAGTGAAATACCGGAACAAGCTGATCGTCATGAAAGGTA
AGGTTTCCTAAACACCATCCTGCTCAATTTACTTTGTGTTCAGCCTTTTA
TAGATTTTTGGAGAAACCTACCAAAAGAAAGTGATAGAccttcacgattt
ttttctagTCACGGAAACTGTATATCCCAGTGTGAGCTCAATATTGGAAA
GTGTACTAATTAAAGTATGAATTTANTAGTCACGGAAACTGTATATCCCA
GTGTGAGCTCAATATTCGAAAGTGTACTAATTAAAGtatgaatttaattt
tttttgatcttCAGCATCATCGATGATGATGAACAACGCCAACCTCAACA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070337-exon-scaffold_54-1491911889:85249..85689 | TCONS_00070337-exon-scaffold_54-1491911889:85249..85689 | Clytia hemisphaerica | exon |
| TCONS_00070337-exon-scaffold_54-1510915933:85249..85689 | TCONS_00070337-exon-scaffold_54-1510915933:85249..85689 | Clytia hemisphaerica | exon |
| TCONS_00070337-exon-scaffold_54-1575043694:85249..85689 | TCONS_00070337-exon-scaffold_54-1575043694:85249..85689 | Clytia hemisphaerica | exon |
| TCONS_00070337-exon-scaffold_54-1491911889:86639..89468 | TCONS_00070337-exon-scaffold_54-1491911889:86639..89468 | Clytia hemisphaerica | exon |
| TCONS_00070337-exon-scaffold_54-1510915933:86639..89468 | TCONS_00070337-exon-scaffold_54-1510915933:86639..89468 | Clytia hemisphaerica | exon |
| TCONS_00070337-exon-scaffold_54-1575043694:86639..89468 | TCONS_00070337-exon-scaffold_54-1575043694:86639..89468 | Clytia hemisphaerica | exon |
| TCONS_00070337-exon-scaffold_54-1491911889:89863..89900 | TCONS_00070337-exon-scaffold_54-1491911889:89863..89900 | Clytia hemisphaerica | exon |
| TCONS_00070337-exon-scaffold_54-1510915933:89863..89900 | TCONS_00070337-exon-scaffold_54-1510915933:89863..89900 | Clytia hemisphaerica | exon |
| TCONS_00070337-exon-scaffold_54-1575043694:89863..89900 | TCONS_00070337-exon-scaffold_54-1575043694:89863..89900 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_54 | supercontig | scaffold_54:85249..89900 + |
Blast
The following BLAST results are available for this feature:
|
