TCONS_00070333 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070333
Unique NameTCONS_00070333
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070333 ID=TCONS_00070333|Name=TCONS_00070333|organism=Clytia hemisphaerica|type=transcript|length=1437bp
GGGAAAGTCGGCAAAACAGCCCAGTTTTGGATGATATACCTGGACATCAT
GAGAATTCAGCACAAGATTCACACAGCCGTCCAAACAAACAACTTCGAGA
TGAGATTGCAAGCGTGGGATGAGATGTTGCCTTTCTATTTTGCATTTAAC
AAAACCAACTATGCAAGATATGGCTCGTGGTATGTCCAAACTATGAAGGA
GATTGATCTGCGATACCCTGGCTTGAAAGAGACCTTCAAAATGTCTGGAA
TTTCTGTCCAAGCTCAATCAGCTTATCCTTCACGTACTTCCACCGATCAG
CGTGGAGAACAGTCGATCAACCGCGATGCTAAAACTTCAGGTGGAATCAA
GTTTTTCGCGAACAAAAAGGACGCTGTTCTAAAATGGTGTTTGAATCGAG
CTGACATAGCTAAAACAACCTCTGAATTAAAAAAGATGGCTGGCACTTCA
AGACCATGTGATAAATACAAGCCTATGAGACCGTCCGAGATTCTTGCCAG
TGAAAAGCATGTGAAGAAAATTATTCAGGTGTTGAAAGGGAAATACATCA
ATCCTTTTGATTTGGGTCTGGAGGAGCTATACAACCTTTCTTCTGGGGAA
ATGGTTGAGGAATCGTTTGCAAGCAAGATTTTGAAAGTAGAAGAAGACGG
GAAGAGAATGCGAGACGAATTTGAGCAGTCACGTGTCAAAggaaattcaa
agaaattccACGACAGATTGAGCCGAGTTCCTATCTACACATTCAAGACA
TATTCAACATCAGTCATTAAATGTCAACATTTTACAAATACAATAGAAGT
AAATCGGGATATCATTGGTACCCTTCTTTCGTTTTCAATTAGAAATGAAC
GCGCAATTGATATTCCGTCAGCTCTTGTCTACCCATTGGCTCCTGTACCT
CTCAGTCTTGCACatggaaatggaaaaaaacgtgAAACACCAAAAAGCAA
GCTAATGAAACTACTGGTGGCAGATACGACAAAGAAAGATCCTAGATCAG
ATGTTACACTGAAGTCTATCAAGAAGAAAGATAAGTCCTTTGTCATTGAC
CTGATTGCTGCTATTCGAACTATGACGAAACTTCCAGATACCTACGAGAA
ATTCATATGGAAATTCATCGGAGACCTGCCAAAAGGGTACAACCGTATTG
ATATTGTTGCTGACACATACAGATCCAATTCGATCAAAGGTGCTGAACGT
AATGAGCGTGGTAAAGGTCAAAAAGTTATCATCGCTTCCAAGGAATCGAG
ATTCCCCTATGACTTCGGAGACTTCATGAGGAatggtgaaaacaaaacaa
aattgattgAGCTGATGTCAGAAGTAATGAGAAGCAATTATCAGAGAGTA
TTGCAGACCACAAATTGTTCGAAGGTCTATTTTTCTCAAGAAGATGTTAC
GTATTGTCTTAGTCGAACGGGCGTCACTATTTCAGAG
Run BLAST on NCBI

protein sequence of TCONS_00070333-protein

>TCONS_00070333-protein ID=TCONS_00070333-protein|Name=TCONS_00070333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=479bp
GKVGKTAQFWMIYLDIMRIQHKIHTAVQTNNFEMRLQAWDEMLPFYFAFN
KTNYARYGSWYVQTMKEIDLRYPGLKETFKMSGISVQAQSAYPSRTSTDQ
RGEQSINRDAKTSGGIKFFANKKDAVLKWCLNRADIAKTTSELKKMAGTS
RPCDKYKPMRPSEILASEKHVKKIIQVLKGKYINPFDLGLEELYNLSSGE
MVEESFASKILKVEEDGKRMRDEFEQSRVKGNSKKFHDRLSRVPIYTFKT
YSTSVIKCQHFTNTIEVNRDIIGTLLSFSIRNERAIDIPSALVYPLAPVP
LSLAHGNGKKRETPKSKLMKLLVADTTKKDPRSDVTLKSIKKKDKSFVID
LIAAIRTMTKLPDTYEKFIWKFIGDLPKGYNRIDIVADTYRSNSIKGAER
NERGKGQKVIIASKESRFPYDFGDFMRNGENKTKLIELMSEVMRSNYQRV
LQTTNCSKVYFSQEDVTYCLSRTGVTISE
Run BLAST on NCBI

transcript from alignment at scaffold_54:207..1859+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070333 ID=TCONS_00070333|Name=TCONS_00070333|organism=Clytia hemisphaerica|type=transcript|length=1653bp|location=Sequence derived from alignment at scaffold_54:207..1859+ (Clytia hemisphaerica)
GGGAAAGTCGGCAAAACAGCCCAGTTTTGGATGATATACCTGGACATCAT
GAGAATTCAGCACAAGATTCACACAGCCGTCCAAACAAACAACTTCGAGA
TGAGATTGCAAGCGTGGGATGAGATGTTGCCTTTCTATTTTGCATTTAAC
AAAACCAACTATGCAAGATATGGCTCGTGGTATGTCCAAACTATGAAGGA
GATTGATCTGCGATACCCTGGCTTGAAAGAGACCTTCAAAATGTCTGGAA
TTTCTGTCCAAGCTCAATCAGCTTATCCTTCACGTACTTCCACCGATCAG
CGTGGAGAACAGTCGATCAACCGCGATGCTAAAACTTCAGGTAAATAGTT
ACATTAATAGAGAATTAGGTTCAATATGAAATCTTTCCCAATCAAAATTA
ATATGTATTTACCAAGAGTTTAATTTTTAACCTCGTCATTTATCACACTG
GAGATAAATTAAATAGAAGGGTTACTNTTTTAACCTCGTCATTTATCACA
CTGGAGATAAATTAAATAGAAGGGTTACTACAGAAAAATTCTTTCGTCAT
TTTCAGGTGGAATCAAGTTTTTCGCGAACAAAAAGGACGCTGTTCTAAAA
TGGTGTTTGAATCGAGCTGACATAGCTAAAACAACCTCTGAATTAAAAAA
GATGGCTGGCACTTCAAGACCATGTGATAAATACAAGCCTATGAGACCGT
CCGAGATTCTTGCCAGTGAAAAGCATGTGAAGAAAATTATTCAGGTGTTG
AAAGGGAAATACATCAATCCTTTTGATTTGGGTCTGGAGGAGCTATACAA
CCTTTCTTCTGGGGAAATGGTTGAGGAATCGTTTGCAAGCAAGATTTTGA
AAGTAGAAGAAGACGGGAAGAGAATGCGAGACGAATTTGAGCAGTCACGT
GTCAAAggaaattcaaagaaattccACGACAGATTGAGCCGAGTTCCTAT
CTACACATTCAAGACATATTCAACATCAGTCATTAAATGTCAACATTTTA
CAAATACAATAGAAGTAAATCGGGATATCATTGGTACCCTTCTTTCGTTT
TCAATTAGAAATGAACGCGCAATTGATATTCCGTCAGCTCTTGTCTACCC
ATTGGCTCCTGTACCTCTCAGTCTTGCACatggaaatggaaaaaaacgtg
AAACACCAAAAAGCAAGCTAATGAAACTACTGGTGGCAGATACGACAAAG
AAAGATCCTAGATCAGATGTTACACTGAAGTCTATCAAGAAGAAAGATAA
GTCCTTTGTCATTGACCTGATTGCTGCTATTCGAACTATGACGAAACTTC
CAGATACCTACGAGAAATTCATATGGAAATTCATCGGAGACCTGCCAAAA
GGGTACAACCGTATTGATATTGTTGCTGACACATACAGATCCAATTCGAT
CAAAGGTGCTGAACGTAATGAGCGTGGTAAAGGTCAAAAAGTTATCATCG
CTTCCAAGGAATCGAGATTCCCCTATGACTTCGGAGACTTCATGAGGAat
ggtgaaaacaaaacaaaattgattgAGCTGATGTCAGAAGTAATGAGAAG
CAATTATCAGAGAGTATTGCAGACCACAAATTGTTCGAAGGTCTATTTTT
CTCAAGAAGATGTTACGTATTGTCTTAGTCGAACGGGCGTCACTATTTCA
GAG

Coding sequence (CDS) from alignment at scaffold_54:207..1859+

>TCONS_00070333 ID=TCONS_00070333|Name=TCONS_00070333|organism=Clytia hemisphaerica|type=CDS|length=2874bp|location=Sequence derived from alignment at scaffold_54:207..1859+ (Clytia hemisphaerica)
GGGAAAGTCGGCAAAACAGCCCAGTTTTGGATGATATACCTGGACATCAT
GAGAATTCAGCACAAGATTCACACAGCCGTCCAAACAAACAACTTCGAGA
TGAGATTGCAAGCGTGGGATGAGATGTTGCCTTTCTATTTTGCATTTAAC
AAAACCAACTATGCAAGATATGGCTCGTGGTATGTCCAAACTATGAAGGA
GATTGATCTGCGATACCCTGGCTTGAAAGAGACCTTCAAAATGTCTGGAA
TTTCTGTCCAAGCTCAATCAGCTTATCCTTCACGTACTTCCACCGATCAG
CGTGGAGAACAGTCGATCAACCGCGATGCTAAAACTTCAGGTGGAATCAA
GTTTTTCGCGAACAAAAAGGACGCTGTTCTAAAATGGTGTTTGAATCGAG
CTGACATAGCTAAAACAACCTCTGAATTAAAAAAGATGGCTGGCACTTCA
AGACCATGTGATAAATACAAGCCTATGAGACCGTCCGAGATTCTTGCCAG
TGAAAAGCATGTGAAGAAAATTATTCAGGTGTTGAAAGGGAAATACATCA
ATCCTTTTGATTTGGGTCTGGAGGAGCTATACAACCTTTCTTCTGGGGAA
ATGGTTGAGGAATCGTTTGCAAGCAAGATTTTGAAAGTAGAAGAAGACGG
GAAGAGAATGCGAGACGAATTTGAGCAGTCACGTGTCAAAggaaattcaa
agaaattccACGACAGATTGAGCCGAGTTCCTATCTACACATTCAAGACA
TATTCAACATCAGTCATTAAATGTCAACATTTTACAAATACAATAGAAGT
AAATCGGGATATCATTGGTACCCTTCTTTCGTTTTCAATTAGAAATGAAC
GCGCAATTGATATTCCGTCAGCTCTTGTCTACCCATTGGCTCCTGTACCT
CTCAGTCTTGCACatggaaatggaaaaaaacgtgAAACACCAAAAAGCAA
GCTAATGAAACTACTGGTGGCAGATACGACAAAGAAAGATCCTAGATCAG
ATGTTACACTGAAGTCTATCAAGAAGAAAGATAAGTCCTTTGTCATTGAC
CTGATTGCTGCTATTCGAACTATGACGAAACTTCCAGATACCTACGAGAA
ATTCATATGGAAATTCATCGGAGACCTGCCAAAAGGGTACAACCGTATTG
ATATTGTTGCTGACACATACAGATCCAATTCGATCAAAGGTGCTGAACGT
AATGAGCGTGGTAAAGGTCAAAAAGTTATCATCGCTTCCAAGGAATCGAG
ATTCCCCTATGACTTCGGAGACTTCATGAGGAatggtgaaaacaaaacaa
aattgattgAGCTGATGTCAGAAGTAATGAGAAGCAATTATCAGAGAGTA
TTGCAGACCACAAATTGTTCGAAGGTCTATTTTTCTCAAGAAGATGTTAC
GTATTGTCTTAGTCGAACGGGCGTCACTATTTCAGAGGGGAAAGTCGGCA
AAACAGCCCAGTTTTGGATGATATACCTGGACATCATGAGAATTCAGCAC
AAGATTCACACAGCCGTCCAAACAAACAACTTCGAGATGAGATTGCAAGC
GTGGGATGAGATGTTGCCTTTCTATTTTGCATTTAACAAAACCAACTATG
CAAGATATGGCTCGTGGTATGTCCAAACTATGAAGGAGATTGATCTGCGA
TACCCTGGCTTGAAAGAGACCTTCAAAATGTCTGGAATTTCTGTCCAAGC
TCAATCAGCTTATCCTTCACGTACTTCCACCGATCAGCGTGGAGAACAGT
CGATCAACCGCGATGCTAAAACTTCAGGTGGAATCAAGTTTTTCGCGAAC
AAAAAGGACGCTGTTCTAAAATGGTGTTTGAATCGAGCTGACATAGCTAA
AACAACCTCTGAATTAAAAAAGATGGCTGGCACTTCAAGACCATGTGATA
AATACAAGCCTATGAGACCGTCCGAGATTCTTGCCAGTGAAAAGCATGTG
AAGAAAATTATTCAGGTGTTGAAAGGGAAATACATCAATCCTTTTGATTT
GGGTCTGGAGGAGCTATACAACCTTTCTTCTGGGGAAATGGTTGAGGAAT
CGTTTGCAAGCAAGATTTTGAAAGTAGAAGAAGACGGGAAGAGAATGCGA
GACGAATTTGAGCAGTCACGTGTCAAAggaaattcaaagaaattccACGA
CAGATTGAGCCGAGTTCCTATCTACACATTCAAGACATATTCAACATCAG
TCATTAAATGTCAACATTTTACAAATACAATAGAAGTAAATCGGGATATC
ATTGGTACCCTTCTTTCGTTTTCAATTAGAAATGAACGCGCAATTGATAT
TCCGTCAGCTCTTGTCTACCCATTGGCTCCTGTACCTCTCAGTCTTGCAC
atggaaatggaaaaaaacgtgAAACACCAAAAAGCAAGCTAATGAAACTA
CTGGTGGCAGATACGACAAAGAAAGATCCTAGATCAGATGTTACACTGAA
GTCTATCAAGAAGAAAGATAAGTCCTTTGTCATTGACCTGATTGCTGCTA
TTCGAACTATGACGAAACTTCCAGATACCTACGAGAAATTCATATGGAAA
TTCATCGGAGACCTGCCAAAAGGGTACAACCGTATTGATATTGTTGCTGA
CACATACAGATCCAATTCGATCAAAGGTGCTGAACGTAATGAGCGTGGTA
AAGGTCAAAAAGTTATCATCGCTTCCAAGGAATCGAGATTCCCCTATGAC
TTCGGAGACTTCATGAGGAatggtgaaaacaaaacaaaattgattgAGCT
GATGTCAGAAGTAATGAGAAGCAATTATCAGAGAGTATTGCAGACCACAA
ATTGTTCGAAGGTCTATTTTTCTCAAGAAGATGTTACGTATTGTCTTAGT
CGAACGGGCGTCACTATTTCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043807XLOC_043807Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070333-proteinTCONS_00070333-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070333-exon-scaffold_54-1491911889:207..546TCONS_00070333-exon-scaffold_54-1491911889:207..546Clytia hemisphaericaexon
TCONS_00070333-exon-scaffold_54-1510915933:207..546TCONS_00070333-exon-scaffold_54-1510915933:207..546Clytia hemisphaericaexon
TCONS_00070333-exon-scaffold_54-1575043694:207..546TCONS_00070333-exon-scaffold_54-1575043694:207..546Clytia hemisphaericaexon
TCONS_00070333-exon-scaffold_54-1491911889:763..1859TCONS_00070333-exon-scaffold_54-1491911889:763..1859Clytia hemisphaericaexon
TCONS_00070333-exon-scaffold_54-1510915933:763..1859TCONS_00070333-exon-scaffold_54-1510915933:763..1859Clytia hemisphaericaexon
TCONS_00070333-exon-scaffold_54-1575043694:763..1859TCONS_00070333-exon-scaffold_54-1575043694:763..1859Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_54supercontigscaffold_54:207..1859 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0731318	0.112692	0.308592	0.333375	0.892367	0.369447	0.705727	1.17632	0.486912	0.874523	0.523294	0.346338	0.409022	0.419039	0	0.198705	0	0.155607	0.0614228	0	0.111733	0.122623	0	0	0.155093	0.525984	0.118845	0	0.0641328	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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