TCONS_00070332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070332
Unique NameTCONS_00070332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length398

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070332 ID=TCONS_00070332|Name=TCONS_00070332|organism=Clytia hemisphaerica|type=transcript|length=398bp
CTTAACTGAACACTTCAAAAACTCGATCATCAACTTCAGTACTCATTTGC
TATCAACCAATGAAGCCCTCCTCAACTTGGTTTCTGATTGGCAGGCCTCT
AGAAACGCAAAATCGATACATGAAAGGGCGCAAATCTATTGCCAGGAGCT
CGAGTTTGAAATTGAACAAATGTCTACCCTCAACAAACAGCAAcggaaaa
acaaaattaaaaataaacgaACTGATATGAAAGTTGAAactctaaaatcg
aaaaatctccACGGGCAGTACGCTAAGCTTCTTGACGAACCACACATAGA
CAAACAAGCCTCGATGCATTGGCTAACTGCAGCTTCACTTAAATGTGCGA
CCGAATCAGCCATATGTGCAATACAAGAACAAGCGATAACGACAAATT
Run BLAST on NCBI

protein sequence of TCONS_00070332-protein

>TCONS_00070332-protein ID=TCONS_00070332-protein|Name=TCONS_00070332-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
LTEHFKNSIINFSTHLLSTNEALLNLVSDWQASRNAKSIHERAQIYCQEL
EFEIEQMSTLNKQQRKNKIKNKRTDMKVETLKSKNLHGQYAKLLDEPHID
KQASMHWLTAASLKCATESAICAIQEQAITTN
Run BLAST on NCBI

transcript from alignment at scaffold_53:38498..38895

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070332 ID=TCONS_00070332|Name=TCONS_00070332|organism=Clytia hemisphaerica|type=transcript|length=398bp|location=Sequence derived from alignment at scaffold_53:38498..38895 (Clytia hemisphaerica)
AATTTGTCGTTATCGCTTGTTCTTGTATTGCACATATGGCTGATTCGGTC
GCACATTTAAGTGAAGCTGCAGTTAGCCAATGCATCGAGGCTTGTTTGTC
TATGTGTGGTTCGTCAAGAAGCTTAGCGTACTGCCCGTggagatttttcg
attttagagtTTCAACTTTCATATCAGTtcgtttatttttaattttgttt
ttccgTTGCTGTTTGTTGAGGGTAGACATTTGTTCAATTTCAAACTCGAG
CTCCTGGCAATAGATTTGCGCCCTTTCATGTATCGATTTTGCGTTTCTAG
AGGCCTGCCAATCAGAAACCAAGTTGAGGAGGGCTTCATTGGTTGATAGC
AAATGAGTACTGAAGTTGATGATCGAGTTTTTGAAGTGTTCAGTTAAG

Coding sequence (CDS) from alignment at scaffold_53:38498..38895

>TCONS_00070332 ID=TCONS_00070332|Name=TCONS_00070332|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_53:38498..38895 (Clytia hemisphaerica)
ATTTGTCGTTATCGCTTGTTCTTGTATTGCACATATGGCTGATTCGGTCG
CACATTTAAGTGAAGCTGCAGTTAGCCAATGCATCGAGGCTTGTTTGTCT
ATGTGTGGTTCGTCAAGAAGCTTAGCGTACTGCCCGTggagatttttcga
ttttagagtTTCAACTTTCATATCAGTtcgtttatttttaattttgtttt
tccgTTGCTGTTTGTTGAGGGTAGACATTTGTTCAATTTCAAACTCGAGC
TCCTGGCAATAGATTTGCGCCCTTTCATGTATCGATTTTGCGTTTCTAGA
GGCCTGCCAATCAGAAACCAAGTTGAGGAGGGCTTCATTGGTTGATAGCA
AATGAGTACTGAAGTTGATGATCGAGTTTTTGAAGTGTTCAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043806XLOC_043806Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070332-proteinTCONS_00070332-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070332-exon-scaffold_53-1491911889:38498..38895TCONS_00070332-exon-scaffold_53-1491911889:38498..38895Clytia hemisphaericaexon
TCONS_00070332-exon-scaffold_53-1510915933:38498..38895TCONS_00070332-exon-scaffold_53-1510915933:38498..38895Clytia hemisphaericaexon
TCONS_00070332-exon-scaffold_53-1575043694:38498..38895TCONS_00070332-exon-scaffold_53-1575043694:38498..38895Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_53supercontigscaffold_53:38498..38895 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.307674	0.371083	0	0	0.62272	0.444806	1.2907	1.57292	0	0	0.504503	0	0.331774	0.12965	0.10659	0.181218	0	0.144434	0.598629	0.208807	0	0.0840825	0	0.206501	4.0174	1.74682	0	0.850323	0.208347	0.0141515
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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