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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070331 ID=TCONS_00070331|Name=TCONS_00070331|organism=Clytia hemisphaerica|type=transcript|length=2538bp
GCCAGGAAGGAAAACCACAAACCCCTTGCCAGTAAGGTAAAAATGGAAAA
TCTCATTTGAATGAAACCAAAAAAAACCTCATCCCGCATCGGCTGTCCCG
CGGTTAAACAAGGGTCGCGTCCCCCAGAGGGAAACCAGTCTGGGGTCGAA
AAGTCTGCTACTGGAATGAAATCCTCTCAAAATGATCCACATGGACATCA
GAACCGGGCAATCCCCAATCCTGATCCTGTGGTGATTGAAAAACCAtcac
aaaaaccaaaaaaaaTGAAATGGGAAATTGAGGATTATAAGAACGTCCTC
CGTGCTTTCTTCAGAGCACAGGAAAACCCAAAAACTACTCTCACGCAACA
AACTTATGACGAGTGGAGAAATATTGTAGGCAACGATTTTCGTAGTTATT
TAAATCCAAACACATTAGGAAACGTGCGTAGGGACATCATTAAACAAAAA
AGACTAAATGACGCACAAATTGAGTACTTGAGTTGAGAAGAGAAGTTCAG
CAATATACAAGAGAAAGAAATTCTGAAAGAAATGTAGAACCAGTTGTGAA
TGTTAGAAATCTTAGTCAGAACGAATTGGAACGTATGATCCTGGCCAGTT
TGTAGAAAATGAAGAAACCAAAGAAGAAGAACCTTTCGGGGAAGAATTAT
TAGATGTTTTGTTCATCCAGGAGAATGAGGCCCAAATTTCTGAAGCTCGC
GATGATATCATCCGCATGTTTGGTCAAATTGAGGCTACTGACTTGAAAGA
TAGGGAAACCTTACCAAAGCTACCATTTACGTTCAAAGTACATAAAAAGG
TGAAAATTTATAATTTTGCTCTCACAAGAATTATTGATGAACTGAGTGAT
GCAGGCTTTGACATGGGTACTGTGAATATTTTGATTTATGCTACAGCCAA
GGCAGCTACTGAAAACATTGGTCTGAAAGTAAAGAAACGAGGCAATCCGA
AACACCACAATAAACCTCCCAAATGGAAACAGAAACTTCAAAAGGAAATT
GAGACTCTGCGGGCGGAGCTCTCAATTCTTGACGAAATCAGTAGAGGCAC
TGTAGTTCGAACGAAAAAGAGCAAAAGACTTACAAAACATGGTATTGTAG
ACAACGCATCACTCGCTAGTGCCAAAGAAAAAGTGAAACAAGTTATGCAG
TTAAAGGCACAAAGACTGCGTCGATTTGACAAACGCAGCAAGTTTTTTAG
ACAGAATAAAGTTTTTCAGATGGACGCAAAGAAATTTTACAGGGAAATAG
GGAAGGGTACAATTGCTGTTGAGGATCCACCAGAGGTAAAGGAAATGACT
GAATTCTGACTCCGCCCAGGGGAAGCCCCAATGGGGGCTTGAAATACGGA
GTGGCGACCGGGCGGTTTATAGTGGCTGGCCATGGAATAATTTTCAAACT
TTCAGGCAGTTTGAAAATTGTCTCACCCAGGGGAAGGGGAAGGGGACAAA
AACGGGAACAGAAACAAGAACAAGACCAAGAAAAAAGAACAGGATAAAAA
ATATTTCTGAACTGGAATATTGATTTGGTAGTTTTGATTTCCGTTGGGAG
GTCCGATTTCCGTTGGGAGGTCATTCCATAATAAAGAGCCAGAATTAATA
AATGTTCGATCAGTGGAAACGAGTCTTAGATAAAGGCACCACAACGTTGT
TTTCAGCAGCAAACCTTGTTCTCTGATGTCCGCCACTGACGAGATTCACC
TCGTTACAGAGGTAGCTCGGTGAAATTTTGTGAATGCCTTTAAACATCAT
AATGGCTTTGTTAATCTCTTGTTAAATTTATTTACTAATTCTTCAAATAA
AAGGACAAATTAACCCTTCGTGCATTTGATAACTTTTGAAATACTTCTCC
AATCAAAATGAAATTTTGCCAGTGTGCACCAAATGTGAATCGGCATCTTT
GGGGAAAATTTCGGCATGATTGATGGCGTCATTGCCATCTAATGACGTCA
TCATCTTTTGAAAATGCCCAAAATTTATTTCACTTTAATTTTTTTACTCA
AATTTTGCGAGGCAACTCCACTTGACATGTATTTTTAGGGTGTAGGGTCA
ATTTTTTGTCACCTGTTGGTATCGTGTATTTTACAGACCGGCCAAAAATT
GCTCGTGTAACTTATGGCATGTTACCCTGAATGTCAGAGGTCGAGTTTTC
AAAGAAAATATCAACCTCTGACGACAAAGTGTAGAGATTTTATCGCGCAT
GTGTCAATCTAATAGCTATAAAAAGAATCAAAGATGAAGAGCAAATTTTA
CCATATTAATGTCTAGTAGACTGTATCAATATACATGTTTACTATTGATG
AATTCCCTAGAAGCCTCCAAGTGCAATTGAAATGAATTTTGTTCAAAAGA
AATCTTTTACATGATTCCCAAGTGTATAATAGTAATTACTAAACTATCAA
TTATAGTAATGTTACGTCAATGGAATCAAAATAATAGAAAGACTTTTATG
TTATGATTCTCTATCACTGACTCTTTTGTGGACTTTTGTGAAAGCATTTG
GGATGCTTTCTTGTTATGTTTTCAGCGACGGGAATTAC Run BLAST on NCBI protein sequence of TCONS_00070331-protein >TCONS_00070331-protein ID=TCONS_00070331-protein|Name=TCONS_00070331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MFGQIEATDLKDRETLPKLPFTFKVHKKVKIYNFALTRIIDELSDAGFDM
GTVNILIYATAKAATENIGLKVKKRGNPKHHNKPPKWKQKLQKEIETLRA
ELSILDEISRGTVVRTKKSKRLTKHGIVDNASLASAKEKVKQVMQLKAQR
LRRFDKRSKFFRQNKVFQMDAKKFYREIGKGTIAVEDPPEVKEMTEF Run BLAST on NCBI transcript from alignment at scaffold_53:32387..34924 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070331 ID=TCONS_00070331|Name=TCONS_00070331|organism=Clytia hemisphaerica|type=transcript|length=2538bp|location=Sequence derived from alignment at scaffold_53:32387..34924 (Clytia hemisphaerica)
GTAATTCCCGTCGCTGAAAACATAACAAGAAAGCATCCCAAATGCTTTCA
CAAAAGTCCACAAAAGAGTCAGTGATAGAGAATCATAACATAAAAGTCTT
TCTATTATTTTGATTCCATTGACGTAACATTACTATAATTGATAGTTTAG
TAATTACTATTATACACTTGGGAATCATGTAAAAGATTTCTTTTGAACAA
AATTCATTTCAATTGCACTTGGAGGCTTCTAGGGAATTCATCAATAGTAA
ACATGTATATTGATACAGTCTACTAGACATTAATATGGTAAAATTTGCTC
TTCATCTTTGATTCTTTTTATAGCTATTAGATTGACACATGCGCGATAAA
ATCTCTACACTTTGTCGTCAGAGGTTGATATTTTCTTTGAAAACTCGACC
TCTGACATTCAGGGTAACATGCCATAAGTTACACGAGCAATTTTTGGCCG
GTCTGTAAAATACACGATACCAACAGGTGACAAAAAATTGACCCTACACC
CTAAAAATACATGTCAAGTGGAGTTGCCTCGCAAAATTTGAGTAAAAAAA
TTAAAGTGAAATAAATTTTGGGCATTTTCAAAAGATGATGACGTCATTAG
ATGGCAATGACGCCATCAATCATGCCGAAATTTTCCCCAAAGATGCCGAT
TCACATTTGGTGCACACTGGCAAAATTTCATTTTGATTGGAGAAGTATTT
CAAAAGTTATCAAATGCACGAAGGGTTAATTTGTCCTTTTATTTGAAGAA
TTAGTAAATAAATTTAACAAGAGATTAACAAAGCCATTATGATGTTTAAA
GGCATTCACAAAATTTCACCGAGCTACCTCTGTAACGAGGTGAATCTCGT
CAGTGGCGGACATCAGAGAACAAGGTTTGCTGCTGAAAACAACGTTGTGG
TGCCTTTATCTAAGACTCGTTTCCACTGATCGAACATTTATTAATTCTGG
CTCTTTATTATGGAATGACCTCCCAACGGAAATCGGACCTCCCAACGGAA
ATCAAAACTACCAAATCAATATTCCAGTTCAGAAATATTTTTTATCCTGT
TCTTTTTTCTTGGTCTTGTTCTTGTTTCTGTTCCCGTTTTTGTCCCCTTC
CCCTTCCCCTGGGTGAGACAATTTTCAAACTGCCTGAAAGTTTGAAAATT
ATTCCATGGCCAGCCACTATAAACCGCCCGGTCGCCACTCCGTATTTCAA
GCCCCCATTGGGGCTTCCCCTGGGCGGAGTCAGAATTCAGTCATTTCCTT
TACCTCTGGTGGATCCTCAACAGCAATTGTACCCTTCCCTATTTCCCTGT
AAAATTTCTTTGCGTCCATCTGAAAAACTTTATTCTGTCTAAAAAACTTG
CTGCGTTTGTCAAATCGACGCAGTCTTTGTGCCTTTAACTGCATAACTTG
TTTCACTTTTTCTTTGGCACTAGCGAGTGATGCGTTGTCTACAATACCAT
GTTTTGTAAGTCTTTTGCTCTTTTTCGTTCGAACTACAGTGCCTCTACTG
ATTTCGTCAAGAATTGAGAGCTCCGCCCGCAGAGTCTCAATTTCCTTTTG
AAGTTTCTGTTTCCATTTGGGAGGTTTATTGTGGTGTTTCGGATTGCCTC
GTTTCTTTACTTTCAGACCAATGTTTTCAGTAGCTGCCTTGGCTGTAGCA
TAAATCAAAATATTCACAGTACCCATGTCAAAGCCTGCATCACTCAGTTC
ATCAATAATTCTTGTGAGAGCAAAATTATAAATTTTCACCTTTTTATGTA
CTTTGAACGTAAATGGTAGCTTTGGTAAGGTTTCCCTATCTTTCAAGTCA
GTAGCCTCAATTTGACCAAACATGCGGATGATATCATCGCGAGCTTCAGA
AATTTGGGCCTCATTCTCCTGGATGAACAAAACATCTAATAATTCTTCCC
CGAAAGGTTCTTCTTCTTTGGTTTCTTCATTTTCTACAAACTGGCCAGGA
TCATACGTTCCAATTCGTTCTGACTAAGATTTCTAACATTCACAACTGGT
TCTACATTTCTTTCAGAATTTCTTTCTCTTGTATATTGCTGAACTTCTCT
TCTCAACTCAAGTACTCAATTTGTGCGTCATTTAGTCTTTTTTGTTTAAT
GATGTCCCTACGCACGTTTCCTAATGTGTTTGGATTTAAATAACTACGAA
AATCGTTGCCTACAATATTTCTCCACTCGTCATAAGTTTGTTGCGTGAGA
GTAGTTTTTGGGTTTTCCTGTGCTCTGAAGAAAGCACGGAGGACGTTCTT
ATAATCCTCAATTTCCCATTTCAttttttttggtttttgtgaTGGTTTTT
CAATCACCACAGGATCAGGATTGGGGATTGCCCGGTTCTGATGTCCATGT
GGATCATTTTGAGAGGATTTCATTCCAGTAGCAGACTTTTCGACCCCAGA
CTGGTTTCCCTCTGGGGGACGCGACCCTTGTTTAACCGCGGGACAGCCGA
TGCGGGATGAGGTTTTTTTTGGTTTCATTCAAATGAGATTTTCCATTTTT
ACCTTACTGGCAAGGGGTTTGTGGTTTTCCTTCCTGGC Coding sequence (CDS) from alignment at scaffold_53:32387..34924 >TCONS_00070331 ID=TCONS_00070331|Name=TCONS_00070331|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_53:32387..34924 (Clytia hemisphaerica)
TCAGAATTCAGTCATTTCCTTTACCTCTGGTGGATCCTCAACAGCAATTG
TACCCTTCCCTATTTCCCTGTAAAATTTCTTTGCGTCCATCTGAAAAACT
TTATTCTGTCTAAAAAACTTGCTGCGTTTGTCAAATCGACGCAGTCTTTG
TGCCTTTAACTGCATAACTTGTTTCACTTTTTCTTTGGCACTAGCGAGTG
ATGCGTTGTCTACAATACCATGTTTTGTAAGTCTTTTGCTCTTTTTCGTT
CGAACTACAGTGCCTCTACTGATTTCGTCAAGAATTGAGAGCTCCGCCCG
CAGAGTCTCAATTTCCTTTTGAAGTTTCTGTTTCCATTTGGGAGGTTTAT
TGTGGTGTTTCGGATTGCCTCGTTTCTTTACTTTCAGACCAATGTTTTCA
GTAGCTGCCTTGGCTGTAGCATAAATCAAAATATTCACAGTACCCATGTC
AAAGCCTGCATCACTCAGTTCATCAATAATTCTTGTGAGAGCAAAATTAT
AAATTTTCACCTTTTTATGTACTTTGAACGTAAATGGTAGCTTTGGTAAG
GTTTCCCTATCTTTCAAGTCAGTAGCCTCAATTTGACCAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070331-exon-scaffold_53-1491911889:32387..34924 | TCONS_00070331-exon-scaffold_53-1491911889:32387..34924 | Clytia hemisphaerica | exon |
| TCONS_00070331-exon-scaffold_53-1510915933:32387..34924 | TCONS_00070331-exon-scaffold_53-1510915933:32387..34924 | Clytia hemisphaerica | exon |
| TCONS_00070331-exon-scaffold_53-1575043694:32387..34924 | TCONS_00070331-exon-scaffold_53-1575043694:32387..34924 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_53 | supercontig | scaffold_53:32387..34924 . |
Blast
The following BLAST results are available for this feature:
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