TCONS_00070329 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070329
Unique NameTCONS_00070329
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070329 ID=TCONS_00070329|Name=TCONS_00070329|organism=Clytia hemisphaerica|type=transcript|length=385bp
TCCTGATGGAAAAATGTCCTCATGAAAACTTTAACCTTTCCCATACGGGG
CAACATCAGCTAAGAATTTTTCTGTGGCACGAGTGGTGTCTGATTTCTCC
TTGAGAAAATAGGTAAACATATTTCCTGAATAATCGTCAGTAAACACAAT
GGCATATTTGAAGCCATCCTTAGCAATTGGATCTATAGGTCCAGAGAGGT
CGGTGTGAATCAGTTCAAATGGCTCAGTTGCTCTTACGTCTGGGTTACGG
TTGCGAGTATTCGGTTGTTTGGCCATGATGCAGGTTTCACAGTCAAATTT
GGTTTGGCTGTCACTGATTTTCATTCCCTGGACTACGCTCTCCATCTTCA
GGATGTCAGCCGTGTTGCAGTGACCAAGAATACGA
Run BLAST on NCBI

protein sequence of TCONS_00070329-protein

>TCONS_00070329-protein ID=TCONS_00070329-protein|Name=TCONS_00070329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
RILGHCNTADILKMESVVQGMKISDSQTKFDCETCIMAKQPNTRNRNPDV
RATEPFELIHTDLSGPIDPIAKDGFKYAIVFTDDYSGNMFTYFLKEKSDT
TRATEKFLADVAPYGKG
Run BLAST on NCBI

transcript from alignment at scaffold_53:27938..28322

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070329 ID=TCONS_00070329|Name=TCONS_00070329|organism=Clytia hemisphaerica|type=transcript|length=385bp|location=Sequence derived from alignment at scaffold_53:27938..28322 (Clytia hemisphaerica)
TCGTATTCTTGGTCACTGCAACACGGCTGACATCCTGAAGATGGAGAGCG
TAGTCCAGGGAATGAAAATCAGTGACAGCCAAACCAAATTTGACTGTGAA
ACCTGCATCATGGCCAAACAACCGAATACTCGCAACCGTAACCCAGACGT
AAGAGCAACTGAGCCATTTGAACTGATTCACACCGACCTCTCTGGACCTA
TAGATCCAATTGCTAAGGATGGCTTCAAATATGCCATTGTGTTTACTGAC
GATTATTCAGGAAATATGTTTACCTATTTTCTCAAGGAGAAATCAGACAC
CACTCGTGCCACAGAAAAATTCTTAGCTGATGTTGCCCCGTATGGGAAAG
GTTAAAGTTTTCATGAGGACATTTTTCCATCAGGA

Coding sequence (CDS) from alignment at scaffold_53:27938..28322

>TCONS_00070329 ID=TCONS_00070329|Name=TCONS_00070329|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_53:27938..28322 (Clytia hemisphaerica)
CGTATTCTTGGTCACTGCAACACGGCTGACATCCTGAAGATGGAGAGCGT
AGTCCAGGGAATGAAAATCAGTGACAGCCAAACCAAATTTGACTGTGAAA
CCTGCATCATGGCCAAACAACCGAATACTCGCAACCGTAACCCAGACGTA
AGAGCAACTGAGCCATTTGAACTGATTCACACCGACCTCTCTGGACCTAT
AGATCCAATTGCTAAGGATGGCTTCAAATATGCCATTGTGTTTACTGACG
ATTATTCAGGAAATATGTTTACCTATTTTCTCAAGGAGAAATCAGACACC
ACTCGTGCCACAGAAAAATTCTTAGCTGATGTTGCCCCGTATGGGAAAGG
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043803XLOC_043803Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070329-proteinTCONS_00070329-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070329-exon-scaffold_53-1491911889:27938..28322TCONS_00070329-exon-scaffold_53-1491911889:27938..28322Clytia hemisphaericaexon
TCONS_00070329-exon-scaffold_53-1510915933:27938..28322TCONS_00070329-exon-scaffold_53-1510915933:27938..28322Clytia hemisphaericaexon
TCONS_00070329-exon-scaffold_53-1575043694:27938..28322TCONS_00070329-exon-scaffold_53-1575043694:27938..28322Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_53supercontigscaffold_53:27938..28322 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.446589	0.271839	0.214811	0.25916	0	0.169866	0.210406	1.02113	0.2685	0.536253	0.417678	0.457851	0	0.302648	0	0	0.224231	0.389794	0.285192	0	0	1.7314	0.579464	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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