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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070327 ID=TCONS_00070327|Name=TCONS_00070327|organism=Clytia hemisphaerica|type=transcript|length=1533bp
GTGGCCTTACGCGAGTCTTTACGCGGCAACACCTTTCCACATGAATTTAT
TTTAGGAAAATAATCCAcggctttttcaaaaaaaattcaaaaaattgagc
GAAAAAAAGATGTTTGAAAGCCCTTATTCTGGTTGAGaattttcatcaga
atttcatGTTCTTTCCGATGGAAtcatcagattttgaaaacttcgaaaaa
aataattttttgcccagccacctgatgacgtcatctgacaGGTGGCCAGA
TGACATAATTAGGTGTTACTgcttaaaattaagttttagacccccTAAGA
GGTAGTCCACTAATCCTTCATAGCAACAATAAACAACGTGGTTTGTGTTT
TCAACCAAATATGCctgaaaattttgttcaaactgtacaGTCTTTAAATA
TTGTAATTCAAAATAAACGTATCCACTAACAAGCCATATCCTTGTAATTT
TACCGAATATTGGTTTGATTGGATTTTCACTCACTGAAATCATCACGTGG
CCACCAATAGCATACTTTGTACCATGTAAAACTGTCCAACTAAGAGTGTA
AACGTCTTTAAGTTCTACTCCTGGCAAAAGGGAGAATTTATCAAAAGCCA
AACGGAGGTTGTTCTTAGCCTCAACTCCTACCGATCGCACTACACCATGC
TCCATTGACTTGGAAAAAAGTGGGTGATTCTGTGGTGTGTCTTGTTTTAA
ATCGAAGTCAACGCAATTAAGCCGTTGGTATCTCTTTGCAAGTGATAGAC
AAATGTTTTTAGAGTTTTGCTTTTGggcaattttcttaaaatacttATGG
GTCGCTTCAAAACTGTAGCAGGACGATCTTATTGCTGGTCCCAAAAGAAG
AATTTGACTTGGGATGTGAATCGTGTAGTGCTGCTTCGGAATTATGTTGC
TGTTTGGAAATAATTGTTTAAATTGTTTGAGGTGATCTGAAATCATCTTT
TTTAAAGCAGGTACTGTAATTTTCATTATAACTGGGCTATAAATCATTTG
CACAATCTCCAACAAATTAATTAAAAAGACGTAATAAACGTCATCAGCAT
CAACAAAAGGGGCTAAATAAAATGGCAAAAGCCGAAGGAAAAGTCTAGCC
TGAGAGGCATTATATTTGAGTTTATAGCCATCCTTGGTAAAAACTGTTTC
CTTGAGTGGAGGAGGTTTATCCGAAGTTTCTGTGTAGCCATAGTTATGAC
TCGCTATGGCACTGTTTAATTGCTCTAATGTTATTTGATTGGCCTTGATC
AAGTTAAGTAAAACCAACCTTGTCTCATACTGTAACACGCCCTCTGCTAT
AGTGTGCATTATATCTTGCGGCATTTGTTTGCTTACGTCGTATTCAGGAA
GAGAtgataaaattgttttattattaatGCCAAAAAGCAAACTAAATGTT
TCTCGAACTGCTACATTTACTGAATTTTCGACCATATCTGCTTCTCTTTC
ATAACTTGCTTTGTTTCGCAATGTTTCACTATCTTCCTCAAATGTAGTTT
GCATCGTATCAAAGTCGATGTAACAATGCCGNN Run BLAST on NCBI protein sequence of TCONS_00070327-protein >TCONS_00070327-protein ID=TCONS_00070327-protein|Name=TCONS_00070327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp
RHCYIDFDTMQTTFEEDSETLRNKASYEREADMVENSVNVAVRETFSLLF
GINNKTILSSLPEYDVSKQMPQDIMHTIAEGVLQYETRLVLLNLIKANQI
TLEQLNSAIASHNYGYTETSDKPPPLKETVFTKDGYKLKYNASQARLFLR
LLPFYLAPFVDADDVYYVFLINLLEIVQMIYSPVIMKITVPALKKMISDH
LKQFKQLFPNSNIIPKQHYTIHIPSQILLLGPAIRSSCYSFEATHKYFKK
IAQKQNSKNICLSLAKRYQRLNCVDFDLKQDTPQNHPLFSKSMEHGVVRS
VGVEAKNNLRLAFDKFSLLPGVELKDVYTLSWTVLHGTKYAIGGHVMISV
SENPIKPIFGKITRIWLVSGYVYFELQYLKTVQFEQNFQAYLVENTNHVV
YCCYEGLVDYLLGGLKLNFKQ Run BLAST on NCBI transcript from alignment at scaffold_53:12379..13911 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070327 ID=TCONS_00070327|Name=TCONS_00070327|organism=Clytia hemisphaerica|type=transcript|length=1533bp|location=Sequence derived from alignment at scaffold_53:12379..13911 (Clytia hemisphaerica)
NNCGGCATTGTTACATCGACTTTGATACGATGCAAACTACATTTGAGGAA
GATAGTGAAACATTGCGAAACAAAGCAAGTTATGAAAGAGAAGCAGATAT
GGTCGAAAATTCAGTAAATGTAGCAGTTCGAGAAACATTTAGTTTGCTTT
TTGGCattaataataaaacaattttatcaTCTCTTCCTGAATACGACGTA
AGCAAACAAATGCCGCAAGATATAATGCACACTATAGCAGAGGGCGTGTT
ACAGTATGAGACAAGGTTGGTTTTACTTAACTTGATCAAGGCCAATCAAA
TAACATTAGAGCAATTAAACAGTGCCATAGCGAGTCATAACTATGGCTAC
ACAGAAACTTCGGATAAACCTCCTCCACTCAAGGAAACAGTTTTTACCAA
GGATGGCTATAAACTCAAATATAATGCCTCTCAGGCTAGACTTTTCCTTC
GGCTTTTGCCATTTTATTTAGCCCCTTTTGTTGATGCTGATGACGTTTAT
TACGTCTTTTTAATTAATTTGTTGGAGATTGTGCAAATGATTTATAGCCC
AGTTATAATGAAAATTACAGTACCTGCTTTAAAAAAGATGATTTCAGATC
ACCTCAAACAATTTAAACAATTATTTCCAAACAGCAACATAATTCCGAAG
CAGCACTACACGATTCACATCCCAAGTCAAATTCTTCTTTTGGGACCAGC
AATAAGATCGTCCTGCTACAGTTTTGAAGCGACCCATaagtattttaaga
aaattgccCAAAAGCAAAACTCTAAAAACATTTGTCTATCACTTGCAAAG
AGATACCAACGGCTTAATTGCGTTGACTTCGATTTAAAACAAGACACACC
ACAGAATCACCCACTTTTTTCCAAGTCAATGGAGCATGGTGTAGTGCGAT
CGGTAGGAGTTGAGGCTAAGAACAACCTCCGTTTGGCTTTTGATAAATTC
TCCCTTTTGCCAGGAGTAGAACTTAAAGACGTTTACACTCTTAGTTGGAC
AGTTTTACATGGTACAAAGTATGCTATTGGTGGCCACGTGATGATTTCAG
TGAGTGAAAATCCAATCAAACCAATATTCGGTAAAATTACAAGGATATGG
CTTGTTAGTGGATACGTTTATTTTGAATTACAATATTTAAAGACtgtaca
gtttgaacaaaattttcagGCATATTTGGTTGAAAACACAAACCACGTTG
TTTATTGTTGCTATGAAGGATTAGTGGACTACCTCTTAgggggtctaaaa
cttaattttaagcAGTAACACCTAATTATGTCATCTGGCCACCtgtcaga
tgacgtcatcaggtggctgggcaaaaaattatttttttcgaagttttcaa
aatctgatgaTTCCATCGGAAAGAACatgaaattctgatgaaaattCTCA
ACCAGAATAAGGGCTTTCAAACATCTTTTTTTCgctcaattttttgaatt
ttttttgaaaaagccgTGGATTATTTTCCTAAAATAAATTCATGTGGAAA
GGTGTTGCCGCGTAAAGACTCGCGTAAGGCCAC Coding sequence (CDS) from alignment at scaffold_53:12379..13911 >TCONS_00070327 ID=TCONS_00070327|Name=TCONS_00070327|organism=Clytia hemisphaerica|type=CDS|length=1266bp|location=Sequence derived from alignment at scaffold_53:12379..13911 (Clytia hemisphaerica)
CGGCATTGTTACATCGACTTTGATACGATGCAAACTACATTTGAGGAAGA
TAGTGAAACATTGCGAAACAAAGCAAGTTATGAAAGAGAAGCAGATATGG
TCGAAAATTCAGTAAATGTAGCAGTTCGAGAAACATTTAGTTTGCTTTTT
GGCattaataataaaacaattttatcaTCTCTTCCTGAATACGACGTAAG
CAAACAAATGCCGCAAGATATAATGCACACTATAGCAGAGGGCGTGTTAC
AGTATGAGACAAGGTTGGTTTTACTTAACTTGATCAAGGCCAATCAAATA
ACATTAGAGCAATTAAACAGTGCCATAGCGAGTCATAACTATGGCTACAC
AGAAACTTCGGATAAACCTCCTCCACTCAAGGAAACAGTTTTTACCAAGG
ATGGCTATAAACTCAAATATAATGCCTCTCAGGCTAGACTTTTCCTTCGG
CTTTTGCCATTTTATTTAGCCCCTTTTGTTGATGCTGATGACGTTTATTA
CGTCTTTTTAATTAATTTGTTGGAGATTGTGCAAATGATTTATAGCCCAG
TTATAATGAAAATTACAGTACCTGCTTTAAAAAAGATGATTTCAGATCAC
CTCAAACAATTTAAACAATTATTTCCAAACAGCAACATAATTCCGAAGCA
GCACTACACGATTCACATCCCAAGTCAAATTCTTCTTTTGGGACCAGCAA
TAAGATCGTCCTGCTACAGTTTTGAAGCGACCCATaagtattttaagaaa
attgccCAAAAGCAAAACTCTAAAAACATTTGTCTATCACTTGCAAAGAG
ATACCAACGGCTTAATTGCGTTGACTTCGATTTAAAACAAGACACACCAC
AGAATCACCCACTTTTTTCCAAGTCAATGGAGCATGGTGTAGTGCGATCG
GTAGGAGTTGAGGCTAAGAACAACCTCCGTTTGGCTTTTGATAAATTCTC
CCTTTTGCCAGGAGTAGAACTTAAAGACGTTTACACTCTTAGTTGGACAG
TTTTACATGGTACAAAGTATGCTATTGGTGGCCACGTGATGATTTCAGTG
AGTGAAAATCCAATCAAACCAATATTCGGTAAAATTACAAGGATATGGCT
TGTTAGTGGATACGTTTATTTTGAATTACAATATTTAAAGACtgtacagt
ttgaacaaaattttcagGCATATTTGGTTGAAAACACAAACCACGTTGTT
TATTGTTGCTATGAAGGATTAGTGGACTACCTCTTAgggggtctaaaact
taattttaagcAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070327-exon-scaffold_53-1491911889:12379..13911 | TCONS_00070327-exon-scaffold_53-1491911889:12379..13911 | Clytia hemisphaerica | exon |
| TCONS_00070327-exon-scaffold_53-1510915933:12379..13911 | TCONS_00070327-exon-scaffold_53-1510915933:12379..13911 | Clytia hemisphaerica | exon |
| TCONS_00070327-exon-scaffold_53-1575043694:12379..13911 | TCONS_00070327-exon-scaffold_53-1575043694:12379..13911 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_53 | supercontig | scaffold_53:12379..13911 . |
Blast
The following BLAST results are available for this feature:
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